Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_02g0021240 | OGI:02061270 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr02:23094652-23097559 | ||||||||
| Gene Symbol | OsFbox097, OsFbox97, Os_F0402 | ||||||||||
| DNA seq | gagtccgtagttgcgctttcaaacccatcacccttctgcttaagatctgaaagctacaaaagaagttgtgcttgaaatacaagtcaaataaattatgcaacacaactataattctgacagctacgtgacataaacatcaaaatattacattataaaaacttggtgacatggtatggccaaacatggaggacctatctgacacatgaaatggtagatttgacaaaggtaccacttcaactaaacaacactctcgctcgggcagcaaagggataataagttaggctctcctcatacaacataggaaccacaggcataacctttgggctcacactatttagtgccttcacatattggtgtctggaggacaacagattcttccctgatgaggcacttggaggtgtagcaaagttctcacatggagccatagatagtttccacggagaaaacttcctaggaacatcttcgcatctggtaatgtggcacttaagatgacctccagtgcgctgttgctgcactttaggtgtggcaagtgacacctgatcaagtgcaagcaagttttcaattgtttgatcaaatggattatataaaccaagcttcctcccagtattcagcagaatccttccatctgtaaggtcaactgccataggcactacaacattcgttgcaagtgagtaatctggccagaattttaaattgattgtgtatgctctagtccatagaccatgatcccacttccatatatctaactcatctgcaactgaatttgaaagaacagcacacaactttcctagaagctccaccacaaatgcatggcagcgacttctggggtcccacattgcaatgcttgaagggcaagggatgacttcaaatatcttagcggcaatgtcaaaagacacaatggctcgttcataactctgacccaaccttggttcgctcatccagtacagcactccatccacagagacaggtggcatgtcattcacaggcagaggtggctgcgggagttgctcgaagtatccagaaccacagctccatagagaacatgttaaagaatactcacgagagttgtagtctttccggtcatagaaaatccccacaacaacatgatcctgaatctcctggctgaaccccaaaccaacattcttattgccaactgcaaaaggattgtcttcttgttcacggcaacccgtaggcattttccatggttggtgctgatgccactctctgttccagtagaccctgtggtaacctgtacacgggttgaacagatagtcctcctccacgaagctcatcaaattcaatccacggcaaggcttggagcaaaccacctttgtgtcaagaaacagtgtgccttgattggatgcctcttgaagccatttacttaagggaacaaagttgaaaagtgattttccagagcccttacccacaagcatgatttttggcctcttgtccatgttcttgtgtgcaaagtatgcacggataaatctttcactctttatcagcccaagccattgcttacagactggtttgaacttcaagactgattcagccgggagtcggagtaggatctccttagtagccttagacaagggagttgcgaaggcaatctcttcccttgttttatgcactggggtaaggcattctttaaataaactgaatctaatatcagatttctcattttgataggatgtgcaggtctccgagattgaggtaatggtttccagagttctagaaacaggatcataggaacaaactttgtgcttggatgtggcgatgattatcttcgtacctgatctgcaactaccagcggaaccgataactttcactatctgtggctcaagtaaatccctaggcaactgccctgttaaatcaattcgatgatccaaagaccaatcaccagagttatagtccttaagcttccaaatttccaacttgcaaacagcagttgacctatcacgaaggtctcggaccatacacagattaccatcaagctccaccaaatgcactccagatgccacaaagggtggtgatcggatccatctgaaggtttcatcagtgagagaaaatgataaaatagaagctcttggtagtttaacgtgatgcaatgggttgatcaaccagtgcagatatccattgaagaaaagtggctgcagtttgttcatcaccgcattggaaatagcagaacgagcaaaactgtagaaccggaaaggtactccaccagcggcaggcctccaaatatccccttcatcgcccccaagtgtgtatatctcacacttcaaaaattccttctcaagcaagttcccttcaaaaagcctcactaccttgtacttcttagtccgggcatcgcacccaagaccagcagtggcaaaagccacatctcggaaaggcggcaaccgtgtgactgcccgtgtggttgcattcataacatagtaagctggggcaataccatcatacaggagggagagaccatggcatggtgcgggtgtcacctccacatagtttccgcgaacatcatcaagcgtgagcagcaggtcatcggtgggcttcgatggtgagcacttgtacaccgcggtggagttgaaatttgccgtaggtgagacgaatagcagcttaggagctgacgacatctcctcggctctcgctgcgtagagttgaccaaattcctcggaagacagcattgcgtcccaggagcggcaggcagcccggaagcgaaggatggatttgacgggcaaccgcaggcacacctccgtcagcaactcgtcaggtagcatcgcggccgcatgacgggatggtacagatttcctcctcctcctcttgcttCccggggccaacgtagccgtctccggcagcacggacctcttcctcttgctgtcttgctgcatcatgttgccttcaaacttgacgaccc
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| CDS seq | atgatgcagcaagacagcaagaggaagaggtccgtgctgccggagacggctacgttggccccggGaagcaagaggaggaggaggaaatctgtaccatcccgtcatgcggccgcgatgctacctgacgagttgctgacggaggtgtgcctgcggttgcccgtcaaatccatccttcgcttccgggctgcctgccgctcctgggacgcaatgctgtcttccgaggaatttggtcaactctacgcagcgagagccgaggagatgtcgtcagctcctaagctgctattcgtctcacctacggcaaatttcaactccaccgcggtgtacaagtgctcaccatcgaagcccaccgatgacctgctgctcacgcttgatgatgttcgcggaaactatgtggaggtgacacccgcaccatgccatggtctctccctcctgtatgatggtattgccccagcttactatgttatgaatgcaaccacacgggcagtcacacggttgccgcctttccgagatgtggcttttgccactgctggtcttgggtgcgatgcccggactaagaagtacaaggtagtgaggctttttgaagggaacttgcttgagaaggaatttttgaagtgtgagatatacacacttgggggcgatgaaggggatatttggaggcctgccgctggtggagtacctttccggttctacagttttgctcgttctgctatttccaatgcggtgatgaacaaactgcagccacttttcttcaatggatatctgcactggttgatcaacccattgcatcacgttaaactaccaagagcttctattttatcattttctctcactgatgaaaccttcagatggatccgatcaccaccctttgtggcatctggagtgcatttggtggagcttgatggtaatctgtgtatggtccgagaccttcgtgataggtcaactgctgtttgcaagttggaaatttggaagcttaaggactataactctggtgattggtctttggatcatcgaattgatttaacagggcagttgcctagggatttacttgagccacagatagtgaaagttatcggttccgctggtagttgcagatcaggtacgaagataatcatcgccacatccaagcacaaagtttgttcctatgatcctgtttctagaactctggaaaccattacctcaatctcggagacctgcacatcctatcaaaatgagaaatctgatattagattcagtttatttaaagaatgccttaccccagtgcataaaacaagggaagagattgccttcgcaactcccttgtctaaggctactaaggagatcctactccgactcccggctgaatcagtcttgaagttcaaaccagtctgtaagcaatggcttgggctgataaagagtgaaagatttatccgtgcatactttgcacacaagaacatggacaagaggccaaaaatcatgcttgtgggtaagggctctggaaaatcacttttcaactttgttcccttaagtaaatggcttcaagaggcatccaatcaaggcacactgtttcttgacacaaaggtggtttgctccaagccttgccgtggattgaatttgatgagcttcgtggaggaggactatctgttcaacccgtgtacaggttaccacagggtctactggaacagagagtggcatcagcaccaaccatggaaaatgcctacgggttgccgtgaacaagaagacaatccttttgcagttggcaataagaatgttggtttggggttcagccaggagattcaggatcatgttgttgtggggattttctatgaccggaaagactacaactctcgtgagtattctttaacatgttctctatggagctgtggttctggatacttcgagcaactcccgcagccacctctgcctgtgaatgacatgccacctgtctctgtggatggagtgctgtactggatgagcgaaccaaggttgggtcagagttatgaacgagccattgtgtcttttgacattgccgctaagatatttgaagtcatcccttgcccttcaagcattgcaatgtgggaccccagaagtcgctgccatgcatttgtggtggagcttctaggaaagttgtgtgctgttctttcaaattcagttgcagatgagttagatatatggaagtgggatcatggtctatggactagagcatacacaatcaatttaaaattctggccagattactcacttgcaacgaatgttgtagtgcctatggcagttgaccttacagatggaaggattctgctgaatactgggaggaagcttggtttatataatccatttgatcaaacaattgaaaacttgcttgcacttgatcaggtgtcacttgccacacctaaagtgcagcaacagcgcactggaggtcatcttaagtgccacattaccagatgcgaagatgttcctaggaagttttctccgtggaaactatctatggctccatgtgagaactttgctacacctccaagtgcctcatcagggaagaatctgttgtcctccagacaccaatatgtgaaggcactaaatagtgtgagcccaaaggttatgcctgtggttcctatgttgtatgaggagagcctaacttattatccctttgctgcccgagcgagagtgttgtttagttga
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| Protein seq | MMQQDSKRKRSVLPETATLAPGSKRRRRKSVPSRHAAAMLPDELLTEVCLRLPVKSILRFRAACRSWDAMLSSEEFGQLYAARAEEMSSAPKLLFVSPTANFNSTAVYKCSPSKPTDDLLLTLDDVRGNYVEVTPAPCHGLSLLYDGIAPAYYVMNATTRAVTRLPPFRDVAFATAGLGCDARTKKYKVVRLFEGNLLEKEFLKCEIYTLGGDEGDIWRPAAGGVPFRFYSFARSAISNAVMNKLQPLFFNGYLHWLINPLHHVKLPRASILSFSLTDETFRWIRSPPFVASGVHLVELDGNLCMVRDLRDRSTAVCKLEIWKLKDYNSGDWSLDHRIDLTGQLPRDLLEPQIVKVIGSAGSCRSGTKIIIATSKHKVCSYDPVSRTLETITSISETCTSYQNEKSDIRFSLFKECLTPVHKTREEIAFATPLSKATKEILLRLPAESVLKFKPVCKQWLGLIKSERFIRAYFAHKNMDKRPKIMLVGKGSGKSLFNFVPLSKWLQEASNQGTLFLDTKVVCSKPCRGLNLMSFVEEDYLFNPCTGYHRVYWNREWHQHQPWKMPTGCREQEDNPFAVGNKNVGLGFSQEIQDHVVVGIFYDRKDYNSREYSLTCSLWSCGSGYFEQLPQPPLPVNDMPPVSVDGVLYWMSEPRLGQSYERAIVSFDIAAKIFEVIPCPSSIAMWDPRSRCHAFVVELLGKLCAVLSNSVADELDIWKWDHGLWTRAYTINLKFWPDYSLATNVVVPMAVDLTDGRILLNTGRKLGLYNPFDQTIENLLALDQVSLATPKVQQQRTGGHLKCHITRCEDVPRKFSPWKLSMAPCENFATPPSASSGKNLLSSRHQYVKALNSVSPKVMPVVPMLYEESLTYYPFAARARVLFS |
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| Function | Putative F-box protein At2g02030 [UniProtKB/Swiss-Prot:Q9ZPS1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_02g0021240 | OsPr106_02g0021240.01 | Chr02 | 23094652 | 23097559 | - | NAM | ||
| CDS seq | atgatgcagcaagacagcaagaggaagaggtccgtgctgccggagacggctacgttggccccggGaagcaagaggaggaggaggaaatctgtaccatcccgtcatgcggccgcgatgctacctgacgagttgctgacggaggtgtgcctgcggttgcccgtcaaatccatccttcgcttccgggctgcctgccgctcctgggacgcaatgctgtcttccgaggaatttggtcaactctacgcagcgagagccgaggagatgtcgtcagctcctaagctgctattcgtctcacctacggcaaatttcaactccaccgcggtgtacaagtgctcaccatcgaagcccaccgatgacctgctgctcacgcttgatgatgttcgcggaaactatgtggaggtgacacccgcaccatgccatggtctctccctcctgtatgatggtattgccccagcttactatgttatgaatgcaaccacacgggcagtcacacggttgccgcctttccgagatgtggcttttgccactgctggtcttgggtgcgatgcccggactaagaagtacaaggtagtgaggctttttgaagggaacttgcttgagaaggaatttttgaagtgtgagatatacacacttgggggcgatgaaggggatatttggaggcctgccgctggtggagtacctttccggttctacagttttgctcgttctgctatttccaatgcggtgatgaacaaactgcagccacttttcttcaatggatatctgcactggttgatcaacccattgcatcacgttaaactaccaagagcttctattttatcattttctctcactgatgaaaccttcagatggatccgatcaccaccctttgtggcatctggagtgcatttggtggagcttgatggtaatctgtgtatggtccgagaccttcgtgataggtcaactgctgtttgcaagttggaaatttggaagcttaaggactataactctggtgattggtctttggatcatcgaattgatttaacagggcagttgcctagggatttacttgagccacagatagtgaaagttatcggttccgctggtagttgcagatcaggtacgaagataatcatcgccacatccaagcacaaagtttgttcctatgatcctgtttctagaactctggaaaccattacctcaatctcggagacctgcacatcctatcaaaatgagaaatctgatattagattcagtttatttaaagaatgccttaccccagtgcataaaacaagggaagagattgccttcgcaactcccttgtctaaggctactaaggagatcctactccgactcccggctgaatcagtcttgaagttcaaaccagtctgtaagcaatggcttgggctgataaagagtgaaagatttatccgtgcatactttgcacacaagaacatggacaagaggccaaaaatcatgcttgtgggtaagggctctggaaaatcacttttcaactttgttcccttaagtaaatggcttcaagaggcatccaatcaaggcacactgtttcttgacacaaaggtggtttgctccaagccttgccgtggattgaatttgatgagcttcgtggaggaggactatctgttcaacccgtgtacaggttaccacagggtctactggaacagagagtggcatcagcaccaaccatggaaaatgcctacgggttgccgtgaacaagaagacaatccttttgcagttggcaataagaatgttggtttggggttcagccaggagattcaggatcatgttgttgtggggattttctatgaccggaaagactacaactctcgtgagtattctttaacatgttctctatggagctgtggttctggatacttcgagcaactcccgcagccacctctgcctgtgaatgacatgccacctgtctctgtggatggagtgctgtactggatgagcgaaccaaggttgggtcagagttatgaacgagccattgtgtcttttgacattgccgctaagatatttgaagtcatcccttgcccttcaagcattgcaatgtgggaccccagaagtcgctgccatgcatttgtggtggagcttctaggaaagttgtgtgctgttctttcaaattcagttgcagatgagttagatatatggaagtgggatcatggtctatggactagagcatacacaatcaatttaaaattctggccagattactcacttgcaacgaatgttgtagtgcctatggcagttgaccttacagatggaaggattctgctgaatactgggaggaagcttggtttatataatccatttgatcaaacaattgaaaacttgcttgcacttgatcaggtgtcacttgccacacctaaagtgcagcaacagcgcactggaggtcatcttaagtgccacattaccagatgcgaagatgttcctaggaagttttctccgtggaaactatctatggctccatgtgagaactttgctacacctccaagtgcctcatcagggaagaatctgttgtcctccagacaccaatatgtgaaggcactaaatagtgtgagcccaaaggttatgcctgtggttcctatgttgtatgaggagagcctaacttattatccctttgctgcccgagcgagagtgttgtttagttga
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| Protein seq | MMQQDSKRKRSVLPETATLAPGSKRRRRKSVPSRHAAAMLPDELLTEVCLRLPVKSILRFRAACRSWDAMLSSEEFGQLYAARAEEMSSAPKLLFVSPTANFNSTAVYKCSPSKPTDDLLLTLDDVRGNYVEVTPAPCHGLSLLYDGIAPAYYVMNATTRAVTRLPPFRDVAFATAGLGCDARTKKYKVVRLFEGNLLEKEFLKCEIYTLGGDEGDIWRPAAGGVPFRFYSFARSAISNAVMNKLQPLFFNGYLHWLINPLHHVKLPRASILSFSLTDETFRWIRSPPFVASGVHLVELDGNLCMVRDLRDRSTAVCKLEIWKLKDYNSGDWSLDHRIDLTGQLPRDLLEPQIVKVIGSAGSCRSGTKIIIATSKHKVCSYDPVSRTLETITSISETCTSYQNEKSDIRFSLFKECLTPVHKTREEIAFATPLSKATKEILLRLPAESVLKFKPVCKQWLGLIKSERFIRAYFAHKNMDKRPKIMLVGKGSGKSLFNFVPLSKWLQEASNQGTLFLDTKVVCSKPCRGLNLMSFVEEDYLFNPCTGYHRVYWNREWHQHQPWKMPTGCREQEDNPFAVGNKNVGLGFSQEIQDHVVVGIFYDRKDYNSREYSLTCSLWSCGSGYFEQLPQPPLPVNDMPPVSVDGVLYWMSEPRLGQSYERAIVSFDIAAKIFEVIPCPSSIAMWDPRSRCHAFVVELLGKLCAVLSNSVADELDIWKWDHGLWTRAYTINLKFWPDYSLATNVVVPMAVDLTDGRILLNTGRKLGLYNPFDQTIENLLALDQVSLATPKVQQQRTGGHLKCHITRCEDVPRKFSPWKLSMAPCENFATPPSASSGKNLLSSRHQYVKALNSVSPKVMPVVPMLYEESLTYYPFAARARVLFS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 8.340442 | 1.187442 | 16.138298 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0563800 | RBH | 2.000992 | 3.019203 | 3.988237 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g35560 | RBH | 1.122119 | 1.639327 | 0.844814 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0563800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0021490 | RBH | 0.625974 | 7.670204 | 4.608651 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0021580 | RBH | 0.466852 | 1.502958 | 2.000615 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0021590 | RBH | 2.098978 | 4.599992 | 7.508210 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0021290 | RBH | 0.195861 | 0.205529 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0350900 | RBH | 5.9732545 | 11.2628865 | 12.9901345 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0020970 | RBH | 0.316527 | 0.390119 | 1.574144 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0377600 | RBH | 9.417023 | 12.488599 | 12.9936655 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0021420 | RBH | 0.693555 | 0.130019 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0021160 | RBH | 1.243468 | 7.210177 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0021620 | RBH | 6.258054 | 12.855473 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0021320 | RBH | 1.064963 | 0.731228 | 1.274491 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0021150 | RBH | 0.250191 | 2.857919 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G021590 | RBH | 0.182084 | 1.043316 | 1.705956 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0021370 | RBH | 1.468143 | 6.738342 | 6.497638 |
