Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_02g0003850 | OGI:02008920 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr02:2703441-2706741 | ||||||||
| Gene Symbol | OsPP2C10, PP2C10, OsPP18 | ||||||||||
| DNA seq | gttgacccggtctcctccccgccacgtcaccacccgccgatcattcccatccactcctcctcttcttcctcctcctcctcctcctctctctctctctacctcgccatcgctctcctcctcctcctccatccattcccctcctcctcctcctcctcccatgcatgggaggccgtcgaggccattagcttcctcctcctcgtcgtcgtcgtcccgcgtcttctccttcttcttggcgccgcgggttttcttgttcttggtggtggtggtggtcgtcgtcttcttgccgggtcggtcgtcttgctggtggctggagggcacggaggagttggaggaggagatggggtttgccggggactgctcgccggtcagcggtggcgggctcaggtgcgttccttcgctcgatcttgggctttcttgacttgaccctcttttgtgttgccgtggtttcgtgttagggggaagatccaagaggaggaggaggaggaggaggaggagaaggatgacaagtttttcatggcgcgatcaggggctttgtgcttgatttgattggcggctaactatcgagtagtgattcttgaatcagaggctaggacatgaggtttcagtggcggattttgaattagatctgcccgattttgctctgaattagcttagcctaatcgagttccagctcctggctggtgtgaggatgtggccatgattttgaatttgaggagtgtttgaaaacgaaaagtctaatcctttgtaagggcatatggtagaggaattaacctttttcttgtttgatgtgtctgtgtgtagcaactgatttttatggagtgttattagttgtagggatctgtagtttgatctgatttggtaggagctccAaaaaaaaaacattcatgaaataacatgtgagaaattgatttatgcaaacaagttctttttttgtccatttagtatgtagtaacagttttgcgccatcggcataaattttcctgcaaatattatcctattaatgtaactgagaacatacagtactgctagctaataaagataacacatttgattgtcacacgaaattaagtgcactggagtccatgattttagattttgcgtatgactaattaataaatgttccccttttctgttgacagtgaaaacggcaagttcagttatgggtatgcaagtgctcctgggaaaagggcttcaatggaggatttctatgagacgagaatcgatggtgttgatggagagaccattggattatttggcgtattcgacggtactgtacagttccacgagaaatattattaattgtttgggttttggtatgtcaggacatccttgatcaacttacttggttgtacatataggccatggcggagctcgagcggctgaatatgtcaagcagcaccttttcagcaatttaattaagcatccaaagttcatcagtgatatcaagtccgctatcggtatggcattaataattcatgcattacggagcaaaaataattgtagccaacctaaaaggtggttgtgatttctctgtacttttcttgcagctgaaacgtacaaccatacagattcagaatttctgaaagccgaaagtagtcacactagggatgctggctcaactgcctcaacagctattcttgtaggcgatcgcttgctggttgctaatgttggagattctagagcagttgtttgtagaggcggggatggtaagtcactaaatctaatgtgtgtaacatacttcagttagtgtccagtgttttcctctatgtccaatttcagcaggatgcttgagaaggcatttgctgtctttcttccaatttccatggttggggtacatggcagttcaaattatctgaataacaggatttcatattagtcttatttaacacatgttaatcaatcataatatttctcctgtccacccttgcagcaattgcagtttcaagggatcacaaacccgaccagtcagatgagagacaaagaattgaggacgctgggggcttcgtgatgtgggctggtaatttcatgattcctttgaaattatctattttgctttgtacttgtaatgatcattggttctttctaacggttgaacgactttgcagggacgtggcgtgttggtggtgttcttgctgtttctcgagcatttggtgataagctattgaagcagtatgtagttgctgatccagagatcaaggtttgacttaatttgtttgcttagctctcaactaaagccttctatctgcaaaataatattcatcatcgtaattggcattcccatgcatgttactctaaagtagtccaccaatgaactctactttctacctaagttcttcattgcttttatgcaagaaagcaaacaatgagcctgctccatcaacatatcatttatctttccatttggtaaaagaaatgcatcttgttttatttacaggaggagattgtcgatagctccctcgagttcctcatccttgctagcgatggactttgggatgttgtaagtaacaaggtaacaacagaaatttcttgagtctccttcacccgcttgtatgttgccattggcgccttatatatgttactcaatacatgaaacccaaattctatttccaggaagctgttgacatggtgaggcctattcaggatcccgaacaggcagcgaaaaggcttctccaggaggcgtaccaaaggggtagcgccgataacatcaccgttgttattgtccgctttttggagggaacaacgactggtggtggaccaagtagggaggccgccagcgaccaaaactcatagtttctcccaggcagcagcatggcttgttcctgtctgtcatatctgatgctcaaggtagacgattacagtggcggcaccacccgccatgctgccaagaactgacccggcccgaatttcgtcctcgctttcatgctcctggctgaccttaggtggtgatggtggtggtaatgtaggagcagaatggcgatggggccagtgttgttacatatgatatgatcgaaggtgtatcgtgtcttatatataactttgcaatgtagattctatgcttgtgttccatgctaggtctttttttttcttttttagcatctaatgcatgtaatagaagtaaatttaaacgatttgaacgaagttatacactgcagtatgtaacgaaatctttgcgtttgtatttctgatgccatgagcattatgatttctcataagctccgagggtcaaaactccaaaatctgtctggttttgtggttatgcatcaggaggaaagcttgtatcaatagctctctttgcttgtgg
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| CDS seq | atgcatgggaggccgtcgaggccattagcttcctcctcctcgtcgtcgtcgtcccgcgtcttctccttcttcttggcgccgcgggttttcttgttcttggtggtggtggtggtcgtcgtcttcttgccgggtcggtcgtcttgctggtggctggagggcacggaggagttggaggaggagatggggtttgccggggactgctcgccggtcagcggtggcgggctcagtgaaaacggcaagttcagttatgggtatgcaagtgctcctgggaaaagggcttcaatggaggatttctatgagacgagaatcgatggtgttgatggagagaccattggattatttggcgtattcgacggccatggcggagctcgagcggctgaatatgtcaagcagcaccttttcagcaatttaattaagcatccaaagttcatcagtgatatcaagtccgctatcgctgaaacgtacaaccatacagattcagaatttctgaaagccgaaagtagtcacactagggatgctggctcaactgcctcaacagctattcttgtaggcgatcgcttgctggttgctaatgttggagattctagagcagttgtttgtagaggcggggatgcaattgcagtttcaagggatcacaaacccgaccagtcagatgagagacaaagaattgaggacgctgggggcttcgtgatgtgggctgggacgtggcgtgttggtggtgttcttgctgtttctcgagcatttggtgataagctattgaagcagtatgtagttgctgatccagagatcaaggaggagattgtcgatagctccctcgagttcctcatccttgctagcgatggactttgggatgttgtaagtaacaaggaagctgttgacatggtgaggcctattcaggatcccgaacaggcagcgaaaaggcttctccaggaggcgtaccaaaggggtagcgccgataacatcaccgttgttattgtccgctttttggagggaacaacgactggtggtggaccaagtagggaggccgccagcgaccaaaactcatag
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| Protein seq | MHGRPSRPLASSSSSSSSRVFSFFLAPRVFLFLVVVVVVVFLPGRSSCWWLEGTEELEEEMGFAGDCSPVSGGGLSENGKFSYGYASAPGKRASMEDFYETRIDGVDGETIGLFGVFDGHGGARAAEYVKQHLFSNLIKHPKFISDIKSAIAETYNHTDSEFLKAESSHTRDAGSTASTAILVGDRLLVANVGDSRAVVCRGGDAIAVSRDHKPDQSDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDKLLKQYVVADPEIKEEIVDSSLEFLILASDGLWDVVSNKEAVDMVRPIQDPEQAAKRLLQEAYQRGSADNITVVIVRFLEGTTTGGGPSREAASDQNS |
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| Function | Probable protein phosphatase 2C 10 [UniProtKB/Swiss-Prot:Q67UX7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_02g0003850 | OsPr106_02g0003850.01 | Chr02 | 2703441 | 2706741 | + | NAM | ||
| CDS seq | atgcatgggaggccgtcgaggccattagcttcctcctcctcgtcgtcgtcgtcccgcgtcttctccttcttcttggcgccgcgggttttcttgttcttggtggtggtggtggtcgtcgtcttcttgccgggtcggtcgtcttgctggtggctggagggcacggaggagttggaggaggagatggggtttgccggggactgctcgccggtcagcggtggcgggctcagtgaaaacggcaagttcagttatgggtatgcaagtgctcctgggaaaagggcttcaatggaggatttctatgagacgagaatcgatggtgttgatggagagaccattggattatttggcgtattcgacggccatggcggagctcgagcggctgaatatgtcaagcagcaccttttcagcaatttaattaagcatccaaagttcatcagtgatatcaagtccgctatcgctgaaacgtacaaccatacagattcagaatttctgaaagccgaaagtagtcacactagggatgctggctcaactgcctcaacagctattcttgtaggcgatcgcttgctggttgctaatgttggagattctagagcagttgtttgtagaggcggggatgcaattgcagtttcaagggatcacaaacccgaccagtcagatgagagacaaagaattgaggacgctgggggcttcgtgatgtgggctgggacgtggcgtgttggtggtgttcttgctgtttctcgagcatttggtgataagctattgaagcagtatgtagttgctgatccagagatcaaggaggagattgtcgatagctccctcgagttcctcatccttgctagcgatggactttgggatgttgtaagtaacaaggaagctgttgacatggtgaggcctattcaggatcccgaacaggcagcgaaaaggcttctccaggaggcgtaccaaaggggtagcgccgataacatcaccgttgttattgtccgctttttggagggaacaacgactggtggtggaccaagtagggaggccgccagcgaccaaaactcatag
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| Protein seq | MHGRPSRPLASSSSSSSSRVFSFFLAPRVFLFLVVVVVVVFLPGRSSCWWLEGTEELEEEMGFAGDCSPVSGGGLSENGKFSYGYASAPGKRASMEDFYETRIDGVDGETIGLFGVFDGHGGARAAEYVKQHLFSNLIKHPKFISDIKSAIAETYNHTDSEFLKAESSHTRDAGSTASTAILVGDRLLVANVGDSRAVVCRGGDAIAVSRDHKPDQSDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDKLLKQYVVADPEIKEEIVDSSLEFLILASDGLWDVVSNKEAVDMVRPIQDPEQAAKRLLQEAYQRGSADNITVVIVRFLEGTTTGGGPSREAASDQNS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_02g0003850 | OsPr106_02g0003850.02 | Chr02 | 2703536 | 2706601 | + | IsoSeq | ||
| CDS seq | tacctcgccatcgctctcctcctcctcctccatccattcccctcctcctcctcctcctcccatgcatgggaggccgtcgaggccattagcttcctcctcctcgtcgtcgtcgtcccgcgtcttctccttcttcttggcgccgcgggttttcttgttcttggtggtggtggtggtcgtcgtcttcttgccgggtcggtcgtcttgctggtggctggagggcacggaggagttggaggaggagatggggtttgccggggactgctcgccggtcagcggtggcgggctcag
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| Protein seq | YLAIALLLLLHPFPSSSSSSHAWEAVEAISFLLLVVVVPRLLLLLGAAGFLVLGGGGGRRLLAGSVVLLVAGGHGGVGGGDGVCRGLLAGQRWRAQ |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr02 | 2704988 | 2705457 | + | OsPr106_02g0003850.02 | OsPr106_02g0003850.01,OsPr106_02g0003850.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 20.779139 | 27.504423 | 67.628189 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0149800 | RBH | 4.789253 | 2.804890 | 15.141003 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g05630 | RBH | 2.812652 | 1.757675 | 3.406829 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0149800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0003840 | RBH | 2.126638 | 25.664951 | 22.639622 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0003930 | RBH | 1.467480 | 11.398062 | 8.704678 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0003870 | RBH | 1.659466 | 24.486784 | 24.512171 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0003700 | RBH | 0.491762 | 0.716232 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0027790 | RBH | 3.959663 | 0.000000 | 38.770973 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0046600 | RBH | 7.4861965 | 19.802268 | 92.4560665 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0003780 | RBH | 0.967890 | 2.128179 | 7.591095 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0049000 | RBH | 18.4996835 | 30.3148565 | 27.0495995 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0003900 | RBH | 1.130744 | 0.932015 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0003710 | RBH | 1.419867 | 44.691788 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0003980 | RBH | 10.247086 | 59.152454 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0003940 | RBH | 3.134944 | 3.087225 | 7.749896 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0003750 | RBH | 0.976840 | 21.455193 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G003790 | RBH | 1.045678 | 5.538955 | 13.824080 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0003730 | RBH | 3.185088 | 63.277115 | 27.204367 |
