Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_01g0046180 | OGI:01122970 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr01:43041600-43045783 | ||||||||
| Gene Symbol | IRO2, OsIRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56 | ||||||||||
| DNA seq | gacccctggcaacggccttctgaccgtgtgtgttgtgtaatcaaactctgctctcttcttctaatatattgacgtgcaatttttttgcacgttcgcgaaaaaaaaaatcaaatttggatgtggctcgTGACATGTTTGGTACGATTCAACTCTTTACCCGGTTAAAGTAAGAGCCAAACCTAAGCATAGTTCATGCTATGATGCGGTCCATATGGTCTGCTATAAGATCTCGGCCGATTTCAGCAAATTAGCTAGGATGAGACCTCATTATTGGTCCTCATAACACGCAGAAAGCCccccaaagcctacgaaatttaatttgtgcctagtctggaatttcaatggaaaagacactttttgataacaccttcgacatcctcagaaatatttgcaggaaaggtctttagtctttgcatatataattacactaatcctcctctctcgccctatttatgttaattaactgcaaaaacgtaggagtacgccttatccacaaacttgttgcatgtgagtacgatcagcttgctcctggttgctagtacagagggcgcaagtacatttacttctgctagtacatactgtaatgtagatgtgcaagtactgtcagctggtgctcggttaattttcagatgaaatactagcagtacaccacattttagaatagagagagtagtacctaaggagaagaatccaagagcgtcattgtttcgcttattcgtgaaataagccaaacgacatatttacaaacgaaaaataatttgtgaataaaacttttatatatgtattcttagcgatctaaaagcaaaggctgaaaaataaactttaatgaaaaaactatcaaaattagatccaaatttaagattgaaaatttaaattttggttgataagcataagcataagcgaaaaaaaaagatCccaattaatccatggatgcaggttgcagtgtatttgcatgcattatcttcttttaagtactcttcaggatgtgcgtcctcatattttcctcccataacttgcgcaaaaatatactccatccatccctaaatatttatcgccgttgacttttttaaacatgtttaactatttgtcttattaaaaaacTtttatgaaatatgtaaaactatatgtatacataaaagtatatttaacattgaatcgaaggatagaaaaagaattaataattacttaaatttttggattaagacgaacggttaaacatatttagaagtcaacggcgtcaaatatttagggacggagagagtagattaattagcatccctataaaccgtggaacaccacccactccacaaccctagctaattgaccactagggagctcggtagagtttgtcaaagctggagaaggaggtcgtgaagtagatcttaagattagaaattcgtatgatctctctttaaaatatgtcgagtgatatatagcatgtccggaaacatacttactccctccggccgtcccctaatataagggatttttgacattttgtttgcactgtttgaccactcgtcttatttaaaaaaattgtgcaaatataaaaaaggagaagttgtgcttaaagtactttggataataaagtaagtcacaaataAAATaaataataattctaaaTttttttgaataacacgaatagccaaacagtacaagtaaaatgtcaaaatcccttatattagcggacgaaagtaatatattcttaaGgtttgattttcctccagcaacgttacgcattgcaaaaattaacattttgcaaatctcataatataattaattaatacactgagagtcatgcatgaaatatgtacaaaagctacatcgagcaacatagtatatatgtcatagaaattagttaatataaatcgagcacactacttatatatcattattatcagctaaccaaatgctatatttaaccactgcgcatggtcatttttacctagattttggcccttgattaattcaggattatcataggcacgcgcgcgcggtactagtgcttaaagctttgctttgttcctgacgactttctccaacctttcacaaaatgctgggcactcctcgttgatcgttccttcacttctctgtttcaacattagatacatatatataaatgaaaactgtgagtaattttcagaacaccgaacttctatgacaactaaataacggtctaattgtacgctatatacacacacaaacatgctctactgtcgattttaacccaaacaaggagaaactttcatatgtaatatcccgtatttttagagggttatctcaagtattagtatcatgagtaacgctacatatatttttacagttatcatgtgattcatatatcttcgatttaacaagtataTtttgagatttgtgactaagcaacattggtttttatcataagaaggtcagctctaattgaaatcttaaaaacaactagctgatgaattccacacacgattcagggactactatatctctcatgattatagtagaatttcatcttattcacttataatttctctcatctgttactatgcaaaatattacataattatggattgaacatcaaactatgagcataaacggtagattaaaggggaatttgcaaatttgccacaagttttttcaaTtttgcaagattaaaccacctatgaaaaactatggacctagcatcaaatttgttgcaaaatagtatattgtaatttgtaaatagtagatccctagctaacattgttgtttcgatagaaattttagaatatatataacttttaataaaatttaccactatttaaatctgtaatttgtgttactagatccatggcttattaaaatatgtagttctatgatatattctatactagatttgtgctatatatacaactatatagttcgtgttattgtggtttaaatgtgtagtattaagtctctaattttatgacagtgtgctatataaaagtatagttctataatattattcaatatactcatagttgtataaaatttactcatatttactactaccttcatctTaaaaaacctatatgtttagttatgaacttgaacagtggtatatatacgagtaaatagctaaaaagaaactattttaaggcagagtagtagtatcactagattgtactatagcaccctttatctaatttacccggatcttaacctgactctagtccttgaTttgatgctaggttattgttgatcgaaaatactccatccattctaaaatataaaaaacctaatagaatcgtatgagacatttaattactcgtactataaatctggacagacagtctgtccgggctctatgTttttatattttagaatggagatagtatagagggattttcttttcaaaaatatattaccataagaaatattaattaaactttctagcatagagctgtgtgtataatgtgtacctgaagatggatactgtagaatgtcctgttcccaaatccggaggaagtcgatgaactgatgaagtgaagaccttcgttctccagtactttgatacacttggagagaggaagaactgaacccgccacattgctcaacaagctgacctgaaccatgatctccatgtcattgatgcaggtagccgaaacgatgggagccatgccctcgctcatcagctggctCcccaacactcctggtttgcagttggtggtgctcgtcgtcgtcagctccttcttcttcctctccagattctccacctgcttctgcagctcgggtatgtacttgagcacgcgagacaccgtcgtcgggatgctcagcttcttctgcagcaaaatcacatcaagatctcatgcatatgcatggttaatttggtgtactggatttgattggttttgtgtaaattaaattacagtgtgatcggcgtcggggaggagagcgcggagggaggagtagagctcgttgagctgcttccggcggtcgcgctcgtaggcgttgtggctgagcttcctgtgggagccggatccgccggagccgtagccggaggacaccgcgttcgccgtcgtcggcgccatggagaggtcttggacatcgtcgtcgaggtctaggtccagccacggcgaggacggcagctggccggcgccggagaagatgtccgcctcaagcgacgacatgctgctcgcgaaggctgggtcgtcgacgaacagctgctccat
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| CDS seq | atggagcagctgttcgtcgacgacccagccttcgcgagcagcatgtcgtcgcttgaggcggacatcttctccggcgccggccagctgccgtcctcgccgtggctggacctagacctcgacgacgatgtccaagacctctccatggcgccgacgacggcgaacgcggtgtcctccggctacggctccggcggatccggctcccacaggaagctcagccacaacgcctacgagcgcgaccgccggaagcagctcaacgagctctactcctccctccgcgctctcctccccgacgccgatcacactaagaagctgagcatcccgacgacggtgtctcgcgtgctcaagtacatacccgagctgcagaagcaggtggagaatctggagaggaagaagaaggagctgacgacgacgagcaccaccaactgcaaaccaggagtgttgggGagccagctgatgagcgagggcatggctcccatcagaagtgaaggaacgatcaacgaggagtgcccagcattttgtgaaaggttggagaaagtcgtcaggaacaaagcaaagctttaa
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| Protein seq | MEQLFVDDPAFASSMSSLEADIFSGAGQLPSSPWLDLDLDDDVQDLSMAPTTANAVSSGYGSGGSGSHRKLSHNAYERDRRKQLNELYSSLRALLPDADHTKKLSIPTTVSRVLKYIPELQKQVENLERKKKELTTTSTTNCKPGVLGSQLMSEGMAPIRSEGTINEECPAFCERLEKVVRNKAKL |
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| Function | Protein IRON-RELATED TRANSCRIPTION FACTOR 2 [UniProtKB/Swiss-Prot:A2WZ60] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_01g0046180 | OsPr106_01g0046180.01 | Chr01 | 43041940 | 43045783 | - | NAM | ||
| CDS seq | atggagcagctgttcgtcgacgacccagccttcgcgagcagcatgtcgtcgcttgaggcggacatcttctccggcgccggccagctgccgtcctcgccgtggctggacctagacctcgacgacgatgtccaagacctctccatggcgccgacgacggcgaacgcggtgtcctccggctacggctccggcggatccggctcccacaggaagctcagccacaacgcctacgagcgcgaccgccggaagcagctcaacgagctctactcctccctccgcgctctcctccccgacgccgatcacactaagaagctgagcatcccgacgacggtgtctcgcgtgctcaagtacatacccgagctgcagaagcaggtggagaatctggagaggaagaagaaggagctgacgacgacgagcaccaccaactgcaaaccaggagtgttgggGagccagctgatgagcgagggcatggctcccatcagaagtgaaggaacgatcaacgaggagtgcccagcattttgtgaaaggttggagaaagtcgtcaggaacaaagcaaagctttaa
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| Protein seq | MEQLFVDDPAFASSMSSLEADIFSGAGQLPSSPWLDLDLDDDVQDLSMAPTTANAVSSGYGSGGSGSHRKLSHNAYERDRRKQLNELYSSLRALLPDADHTKKLSIPTTVSRVLKYIPELQKQVENLERKKKELTTTSTTNCKPGVLGSQLMSEGMAPIRSEGTINEECPAFCERLEKVVRNKAKL |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_01g0046180 | OsPr106_01g0046180.02 | Chr01 | 43041600 | 43042315 | - | IsoSeq | ||
| CDS seq | aataagcgaaacaatgacgctcttggattcttctccttaggtactactctctctattctaaaatgtggtgtactgctagtatttcatctgaaaattaaccgagcaccagctgacagtacttgcacatctacattacagtatgtactagcagaagtaaatgtacttgcgccctctgtactagcaaccaggagcaagctgatcgtactcacatgcaacaagtttgtggataaggcgtactcctacgtttttgcagtt
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| Protein seq | NKRNNDALGFFSLGTTLSILKCGVLLVFHLKINRAPADSTCTSTLQYVLAEVNVLAPSVLATRSKLIVLTCNKFVDKAYSYVFAV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 16.823563 | 150.975891 | 0.986125 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0952800 | RBH | 0.051334 | 0.684937 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g72370 | RBH | 0.058034 | 0.487282 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0952800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0047280 | RBH | 0.096326 | 14.857272 | 0.860802 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0046800 | RBH | 32.400738 | 72.340027 | 0.403520 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0047240 | RBH | 0.000000 | 27.468548 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0046650 | RBH | 0.148475 | 0.438006 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0686500 | RBH | 81.7034915 | 169.872574 | 0.2729415 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0045690 | RBH | 0.371625 | 4.850927 | 0.078851 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0688900 | RBH | 250.4586105 | 22.5876965 | 0.353827 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0046280 | RBH | 6.324825 | 5.075381 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0046130 | RBH | 1.470206 | 46.748379 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0046430 | RBH | 41.728222 | 382.508545 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0046400 | RBH | 22.704025 | 4.379685 | 0.206487 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0046190 | RBH | 6.949983 | 10.139172 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G046440 | RBH | 0.0 | 0.0 | 0.233142 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0046260 | RBH | 3.194958 | 196.017380 | 3.645284 |
