Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_01g0044210 | OGI:01119050 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr01:41508066-41511967 | ||||||||
| Gene Symbol | SPL2, OsSPL2 | ||||||||||
| DNA seq | ctgctgctgctgtgatctcttctccttttcttccctGtcatctgtgagcttttgcttCcaatcaacactcctttttgtggtgagacgaggagctgagcttcagctgctgctgtacgagcgcaaaagctcagctcaagaacagatagaggcatcagcagcagcaagatcgagaggataacaagagatctcgtgatagtacttacgtttcgttgctcgatctttttttcgccatggattgggacgccaagatgccttcctgggacctcggcacggtggtcggcccgagcggtggcggtggcggtggcggaggaggaggcggcgcgcttgacctcaagctcggcgcgccgacgagctggaagacgacgacgacggtgtctgctgcgtcggctgctccggcggcggtggcgccaccgccgccgccgccggcgtcgtcgtcgtcttccgcggcggcggcggggaagcgggcgcgggcggggcaggggcagcaggcggcggtgccggcgtgctcggtggaggggtgcgccgccgacctgtccaagtgcgtccgcgactaccaccggcggcacaaggtgtgcgaggcgcactccaagacggccgtcgtcaccgtcgccggccagcagcagcgcttctgccaacagtgcagcaggtacgtgacgtcacccccatgcatttctctacttcctcctcaatttccatttcatttctttgaaaaacaaaatatacatgtttcatttccttttcagaaaacgagaatttgcatgcagatttagttggtgtaaattttttttgtgtggttattacgggtggatttgatttttggcgctgttttagtttctgtccgtttgctatcatgacgcTtttttggcgtttgcaattaacaagccgacgtgcagccaccaccacaccccgaaacttctggtatccatctgtttccaaccccacagtaattcagaatttcagaccagttcaatccttttacgtacgcagccccaaaggttgaatacttgaatctttatacaaacagagcaactcaaagttcaattcttatccttttattttttttaaaaaaaaaactatgaagtttaattaggctagaatcaccagctagcctatccaaacagagcaactcaaagttcaattccttttgAaaaaaaaaagagaaactaacttatttagacatagcaactcaaagttcaatgtttttggttaaaaaaaaaactcgagtttttgattaggctagaatgaccaactaacctttggtggagatcaattttgatttctgggtggtgatctggtccctggagcctgaagaatctgaaccagacaaagcatttgcattggccacccgtgcttcctcttcttcctcgggagggacactgtctttctgtccccacgacgacgcagcagcgcaccaccatggcagcagcagcagaataggcaagatacaatggaactggcactacttgcagggccatgccaatgcttttcccGgtcgcattcgtggctcactcgcccaacaccaacgattttggcaccttccaccctgcatcagctgctgctgctgctcctcgttccagatgctcacctggccacgacaaacgatattccagtcccatccatatgctcagcttaattctttcacagtttcactccggcaattactagcaccaaccagtagatctagctctcatttggatacttctgaatgatcattcatttgagatttgcatcacacataagtacataacaatggattcagattcagagattcaGggaagcccctgtgaccggatggatgaattgattgtttgatgttgttgttttctttgacaggtttcatttgctcggggagttcgatgaggagaagaggagctgcaggaagcggctcgacgggcacaacaagcggcgtcggaagccgcagcctgatcctctcaaccccGgcaaccttttcgccaatcaccacggtatgcaattgcaaaccatatgttcttgagattgttctgttcttgacagcacgaaaattatccacaacaatcctttttttttactgtcgttaagtagtaatactatttgtgatatctcctaagattaaggtgtaatatgaattaagttagaaaaatacagtatgatacactgatactgtacctgagggaccgtagaaaagctctccataattggcaagccgcatgcatcagcctatagtttgtaaaggacgtgaataaagttttcgttttcatagctgacagctgaaatagcacttgaaagcgaagcagaaaattttgacatttttcatccccgttcggtttgatcgaactattttagtgcgacctactaaacctgacatttcttatctccttccagttgactggcagtagtaaacgtttgcattacatgatacaagtaaaactactgtagctgtctgaaagcgcaaagttgacctgaattggagtcgtgtgatatatcatgtcatcatggaaaatccaccgtagtttttggaccttgcatcttggatcatctaggacaggtcattttcaacaattccctgaggaatcgttcataaactagagcattgactcgccgctgcatatctgaaaaacaatattataaaaaaaaatcatatcatagcgttggaagttagcagtaacaaatttatcatcagagaatatcttccaagaacaggagctgtacctgaattctgccaagaaacgcaaatagttgagtgacaatgttttggctcatgagacgtcggcctcactgttggtgtccatcgctttctgtgtgcaggagcggcaagattcacctcgtacccgcagatcttctcgacggcggcgtccatgtcgccgcaggagacgaagtggccggcgaacgtggtcaagacggaggccgccgacgtgttccaagagccgtactaccacgccctccacctcaacggcgccggcgccgccgcggccgcctccatcttccaccacggcggcaacaaggcgaggaagcaccacttccctttcctgacggccgaccacggcggcggcgccgccgcggcgtcgccgttgttcgggtgccagccgttcaccatcacgccttcctcggagagcaggagcagcagcagcagccggcacagcaacggcaagatgttcgcccacgacgggggtctggacaactgtgctctctctcttctgtcagacaaccccacacccacggcgcagatcaccatcccacagcctctcgtcgccggcggcgggcagtacggcggcggcggcggcggcgacgtgtcgctcaccggcctgtcctacgtcagaatggccggcaaggacacgtccatcttggcaaaatctgccactaccactgctactactgctactactcctactaccacaagtgcacagctgcaataccatggctactaccaccaccatgtcagcgccgatcagggtagctccgatgctgcaatccaggctcttcctttctcatcgtggtagtggagattccgggttccgatttcgatctcagcgaggccttgttcttgagctgaattcctgatagatcagatgctagggagatggtaatgttgttcaacaaaatacgtcagtgataatagttgtattatcttggtgatactgaaaaatattcaccatgatatgcacattttccaactttgcctggtatttccagtttatgggaaatacccccaagccagcttatgattcacaattgcattattagaactagtgatattatttttggagggttattgacttgtactgtagtggtacagtttttgttgtgtgtacatttggctatccacttgattggtgtaggggctagttcagcaggaactagacataagttaactgtacttgaatagtcaaattagcctcaaaagctggaggattactgattatttc
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| CDS seq | atggattgggacgccaagatgccttcctgggacctcggcacggtggtcggcccgagcggtggcggtggcggtggcggaggaggaggcggcgcgcttgacctcaagctcggcgcgccgacgagctggaagacgacgacgacggtgtctgctgcgtcggctgctccggcggcggtggcgccaccgccgccgccgccggcgtcgtcgtcgtcttccgcggcggcggcggggaagcgggcgcgggcggggcaggggcagcaggcggcggtgccggcgtgctcggtggaggggtgcgccgccgacctgtccaagtgcgtccgcgactaccaccggcggcacaaggtgtgcgaggcgcactccaagacggccgtcgtcaccgtcgccggccagcagcagcgcttctgccaacagtgcagcaggtttcatttgctcggggagttcgatgaggagaagaggagctgcaggaagcggctcgacgggcacaacaagcggcgtcggaagccgcagcctgatcctctcaaccccGgcaaccttttcgccaatcaccacggagcggcaagattcacctcgtacccgcagatcttctcgacggcggcgtccatgtcgccgcaggagacgaagtggccggcgaacgtggtcaagacggaggccgccgacgtgttccaagagccgtactaccacgccctccacctcaacggcgccggcgccgccgcggccgcctccatcttccaccacggcggcaacaaggcgaggaagcaccacttccctttcctgacggccgaccacggcggcggcgccgccgcggcgtcgccgttgttcgggtgccagccgttcaccatcacgccttcctcggagagcaggagcagcagcagcagccggcacagcaacggcaagatgttcgcccacgacgggggtctggacaactgtgctctctctcttctgtcagacaaccccacacccacggcgcagatcaccatcccacagcctctcgtcgccggcggcgggcagtacggcggcggcggcggcggcgacgtgtcgctcaccggcctgtcctacgtcagaatggccggcaaggacacgtccatcttggcaaaatctgccactaccactgctactactgctactactcctactaccacaagtgcacagctgcaataccatggctactaccaccaccatgtcagcgccgatcagggtagctccgatgctgcaatccaggctcttcctttctcatcgtggtag
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| Protein seq | MDWDAKMPSWDLGTVVGPSGGGGGGGGGGGALDLKLGAPTSWKTTTTVSAASAAPAAVAPPPPPPASSSSSAAAAGKRARAGQGQQAAVPACSVEGCAADLSKCVRDYHRRHKVCEAHSKTAVVTVAGQQQRFCQQCSRFHLLGEFDEEKRSCRKRLDGHNKRRRKPQPDPLNPGNLFANHHGAARFTSYPQIFSTAASMSPQETKWPANVVKTEAADVFQEPYYHALHLNGAGAAAAASIFHHGGNKARKHHFPFLTADHGGGAAAASPLFGCQPFTITPSSESRSSSSSRHSNGKMFAHDGGLDNCALSLLSDNPTPTAQITIPQPLVAGGGQYGGGGGGDVSLTGLSYVRMAGKDTSILAKSATTTATTATTPTTTSAQLQYHGYYHHHVSADQGSSDAAIQALPFSSW |
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| Function | Squamosa promoter-binding-like protein 2 [UniProtKB/Swiss-Prot:Q0JGI1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_01g0044210 | OsPr106_01g0044210.01 | Chr01 | 41508066 | 41511768 | + | NAM | ||
| CDS seq | atggattgggacgccaagatgccttcctgggacctcggcacggtggtcggcccgagcggtggcggtggcggtggcggaggaggaggcggcgcgcttgacctcaagctcggcgcgccgacgagctggaagacgacgacgacggtgtctgctgcgtcggctgctccggcggcggtggcgccaccgccgccgccgccggcgtcgtcgtcgtcttccgcggcggcggcggggaagcgggcgcgggcggggcaggggcagcaggcggcggtgccggcgtgctcggtggaggggtgcgccgccgacctgtccaagtgcgtccgcgactaccaccggcggcacaaggtgtgcgaggcgcactccaagacggccgtcgtcaccgtcgccggccagcagcagcgcttctgccaacagtgcagcaggtttcatttgctcggggagttcgatgaggagaagaggagctgcaggaagcggctcgacgggcacaacaagcggcgtcggaagccgcagcctgatcctctcaaccccGgcaaccttttcgccaatcaccacggagcggcaagattcacctcgtacccgcagatcttctcgacggcggcgtccatgtcgccgcaggagacgaagtggccggcgaacgtggtcaagacggaggccgccgacgtgttccaagagccgtactaccacgccctccacctcaacggcgccggcgccgccgcggccgcctccatcttccaccacggcggcaacaaggcgaggaagcaccacttccctttcctgacggccgaccacggcggcggcgccgccgcggcgtcgccgttgttcgggtgccagccgttcaccatcacgccttcctcggagagcaggagcagcagcagcagccggcacagcaacggcaagatgttcgcccacgacgggggtctggacaactgtgctctctctcttctgtcagacaaccccacacccacggcgcagatcaccatcccacagcctctcgtcgccggcggcgggcagtacggcggcggcggcggcggcgacgtgtcgctcaccggcctgtcctacgtcagaatggccggcaaggacacgtccatcttggcaaaatctgccactaccactgctactactgctactactcctactaccacaagtgcacagctgcaataccatggctactaccaccaccatgtcagcgccgatcagggtagctccgatgctgcaatccaggctcttcctttctcatcgtggtag
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| Protein seq | MDWDAKMPSWDLGTVVGPSGGGGGGGGGGGALDLKLGAPTSWKTTTTVSAASAAPAAVAPPPPPPASSSSSAAAAGKRARAGQGQQAAVPACSVEGCAADLSKCVRDYHRRHKVCEAHSKTAVVTVAGQQQRFCQQCSRFHLLGEFDEEKRSCRKRLDGHNKRRRKPQPDPLNPGNLFANHHGAARFTSYPQIFSTAASMSPQETKWPANVVKTEAADVFQEPYYHALHLNGAGAAAAASIFHHGGNKARKHHFPFLTADHGGGAAAASPLFGCQPFTITPSSESRSSSSSRHSNGKMFAHDGGLDNCALSLLSDNPTPTAQITIPQPLVAGGGQYGGGGGGDVSLTGLSYVRMAGKDTSILAKSATTTATTATTPTTTSAQLQYHGYYHHHVSADQGSSDAAIQALPFSSW
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_01g0044210 | OsPr106_01g0044210.02 | Chr01 | 41511463 | 41511967 | + | IsoSeq | ||
| CDS seq | atgattcacaattgcattattagaactagtgatattatttttggagggttattgacttgtactgtagtggtacagtttttgttgtgtgtacatttggctatccacttgattggtgtaggggctagttcagcaggaactagacataagttaactgtactt |
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| Protein seq | MIHNCIIRTSDIIFGGLLTCTVVVQFLLCVHLAIHLIGVGASSAGTRHKLTVL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 1.321392 | 15.106321 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0922600 | RBH | 0.633555 | 0.722475 | 2.842243 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g69830 | RBH | 0.318229 | 0.337435 | 0.687921 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0922600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0045270 | RBH | 0.0 | 2.646630 | 9.625377 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0044800 | RBH | 0.098896 | 0.313880 | 3.619428 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0045180 | RBH | 0.209275 | 2.851718 | 7.201918 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0044640 | RBH | 0.060439 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0023040 | SBH | 0.501459 | 0.0 | 1.526080 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0664300 | RBH | 6.0523615 | 6.812462 | 35.3106215 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0043830 | RBH | 0.120345 | 0.240274 | 0.958786 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0665700 | RBH | 13.4600215 | 7.0112815 | 13.87738 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0044180 | RBH | 0.070428 | 0.286578 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0044140 | RBH | 0.000000 | 3.556642 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0044440 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0044430 | RBH | 0.283681 | 0.386640 | 1.104789 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0044190 | RBH | 0.000000 | 2.169612 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G044580 | RBH | 0.0 | 2.281400 | 1.752074 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0044310 | RBH | 0.0 | 0.0 | 5.220852 |
