Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_01g0030410 | OGI:01089770 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr01:30875259-30877191 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aatcgaatcgatggatcatgcatgtatataaattatgcaaagtacaatcaatctgcagtgaacgaaggatgccctgctgcaattgtttgttagcatgttcaaatgttcaatagtgctctagaacaaataaatcggggtcagaatcaacgtcgtccagatgcaaccccatgccgtcgacgacgttgaaaatctcagctgatttcgggtggtacgtatcctgcaccaggaacttgtgcacttcaccgtccagctctatccaactataagcagacagcttctgcacgttcttgctcctcatcaggtccctgatctccctcacgtcgccccagaggccggcatccgcgtagatgttggacagcaggacatagatggaggagttgtccggctcaagaaccaggagcttgctcgcggcgagcttggccagctcgacgtcggcgtgagccctgcaggcgctcagcagcgtgctccagatcaccgcgtttggttcgacctccatgtcgcagatgaacttgtacgcttcccgcagccttccagatttgcagaggaggtccactatgcacgcgcagtgctccacttgaggggaaacatggtgaattgtcttcatctctttgaaaaaggacataccttggtctaccaatccagcatgggtgcacgccgttaacagcgcaacgaaagtaatctcgtttggctggacgtcctcctctgtcatctctttgtacaaggtgattgcatcttgcgcaaagccattcagtgctaggcctctcatcatggagttccaggttatgacaaccttgtgttccatccggttgaagacactgcgagctctgccaacgtgcccacactttgtgtacatgtcaattagtgcggatccgaggtagctggtgagtggtaggttctggctctcgacatggctaccaatctgtcctcctaattcatcagagcccagctgagcacaggcagatagtacaccaacaagagtcacctcatttggcttgcaactggttgccttcatcctctcaaacagctctagagattcatgtggcctcccattctgtgcataaccagcgatcatagtgctccatgccacgacatctctctgctgcatccgatcaaactcacggcgtgcctcgtcaatagcctgacacttgacatacatttccatcaaggcagtgtgcactatcatgttctgcaaatcctgctctgcgatcaaagaccttgcccactttcctgtttcaagatcaccagtcttggcacaaatggaaaacatcgtcgcaatagtgatcgcatttggccttgcaccctcactcaacatcctacggaacaacctcaaagcttcctggtattccccaccatgcgcataacaggcgatcattgaattccaggatgcagatgtccttcttaccatgccatcaaatagcctcctcgccttcaccacatcaccggacttggaatacccagtgatcaagcagttcatcggtatcgggtccttcaccggcatctcgtcaaacaccttcacagcacaatccatgtccccgttctttgcatagaaatccaccagagcagtctgcacaaagatatccccaaggagaccacggacaatggcgtgacagtgcacctgctttccctgacgtgacgcggccaagatcgcgcacgacttcacaacgaggggcacacagccgggcgggacgtcggagcccctgcggtgaagcgatgagaaggcgtcgagaagctcctggtgcgagcagagccttgagagagcggagatgagcgtgccgcagagggcgggggtcgggcgcggcacagcgtcgaacaggtggcgtgcggcgcgggaggtggacgcgtcggagagtaggtcgtggagcggccgggtcttgaggaggccggcgagatgctgcggcaggtggcggtaggggaggcttggcggcgcctccat
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| CDS seq | atggaggcgccgccaagcctcccctaccgccacctgccgcagcatctcgccggcctcctcaagacccggccgctccacgacctactctccgacgcgtccacctcccgcgccgcacgccacctgttcgacgctgtgccgcgcccgacccccgccctctgcggcacgctcatctccgctctctcaaggctctgctcgcaccaggagcttctcgacgccttctcatcgcttcaccgcaggggctccgacgtcccgcccggctgtgtgcccctcgttgtgaagtcgtgcgcgatcttggccgcgtcacgtcagggaaagcaggtgcactgtcacgccattgtccgtggtctccttggggatatctttgtgcagactgctctggtggatttctatgcaaagaacggggacatggattgtgctgtgaaggtgtttgacgagatgccggtgaaggacccgataccgatgaactgcttgatcactgggtattccaagtccggtgatgtggtgaaggcgaggaggctatttgatggcatggtaagaaggacatctgcatcctggaattcaatgatcgcctgttatgcgcatggtggggaataccaggaagctttgaggttgttccgtaggatgttgagtgagggtgcaaggccaaatgcgatcactattgcgacgatgttttccatttgtgccaagactggtgatcttgaaacaggaaagtgggcaaggtctttgatcgcagagcaggatttgcagaacatgatagtgcacactgccttgatggaaatgtatgtcaagtgtcaggctattgacgaggcacgccgtgagtttgatcggatgcagcagagagatgtcgtggcatggagcactatgatcgctggttatgcacagaatgggaggccacatgaatctctagagctgtttgagaggatgaaggcaaccagttgcaagccaaatgaggtgactcttgttggtgtactatctgcctgtgctcagctgggctctgatgaattaggaggacagattggtagccatgtcgagagccagaacctaccactcaccagctacctcggatccgcactaattgacatgtacacaaagtgtgggcacgttggcagagctcgcagtgtcttcaaccggatggaacacaaggttgtcataacctggaactccatgatgagaggcctagcactgaatggctttgcgcaagatgcaatcaccttgtacaaagagatgacagaggaggacgtccagccaaacgagattactttcgttgcgctgttaacggcgtgcacccatgctggattggtagaccaaggtatgtcctttttcaaagagatgaagacaattcaccatgtttcccctcaagtggagcactgcgcgtgcatagtggacctcctctgcaaatctggaaggctgcgggaagcgtacaagttcatctgcgacatggaggtcgaaccaaacgcggtgatctggagcacgctgctgagcgcctgcagggctcacgccgacgtcgagctggccaagctcgccgcgagcaagctcctggttcttgagccggacaactcctccatctatgtcctgctgtccaacatctacgcggatgccggcctctggggcgacgtgagggagatcagggacctgatgaggagcaagaacgtgcagaagctgtctgcttatagttggatagagctggacggtgaagtgcacaagttcctggtgcaggatacgtaccacccgaaatcagctgagattttcaacgtcgtcgacggcatggggttgcatctggacgacgttgattctgaccccgatttatttgttctagagcactattga
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| Protein seq | MEAPPSLPYRHLPQHLAGLLKTRPLHDLLSDASTSRAARHLFDAVPRPTPALCGTLISALSRLCSHQELLDAFSSLHRRGSDVPPGCVPLVVKSCAILAASRQGKQVHCHAIVRGLLGDIFVQTALVDFYAKNGDMDCAVKVFDEMPVKDPIPMNCLITGYSKSGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLFRRMLSEGARPNAITIATMFSICAKTGDLETGKWARSLIAEQDLQNMIVHTALMEMYVKCQAIDEARREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNEVTLVGVLSACAQLGSDELGGQIGSHVESQNLPLTSYLGSALIDMYTKCGHVGRARSVFNRMEHKVVITWNSMMRGLALNGFAQDAITLYKEMTEEDVQPNEITFVALLTACTHAGLVDQGMSFFKEMKTIHHVSPQVEHCACIVDLLCKSGRLREAYKFICDMEVEPNAVIWSTLLSACRAHADVELAKLAASKLLVLEPDNSSIYVLLSNIYADAGLWGDVREIRDLMRSKNVQKLSAYSWIELDGEVHKFLVQDTYHPKSAEIFNVVDGMGLHLDDVDSDPDLFVLEHY |
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| Function | Pentatricopeptide repeat-containing protein At1g08070, chloroplastic [UniProtKB/Swiss-Prot:Q9LN01] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_01g0030410 | OsPr106_01g0030410.01 | Chr01 | 30875259 | 30877191 | - | NAM | ||
| CDS seq | atggaggcgccgccaagcctcccctaccgccacctgccgcagcatctcgccggcctcctcaagacccggccgctccacgacctactctccgacgcgtccacctcccgcgccgcacgccacctgttcgacgctgtgccgcgcccgacccccgccctctgcggcacgctcatctccgctctctcaaggctctgctcgcaccaggagcttctcgacgccttctcatcgcttcaccgcaggggctccgacgtcccgcccggctgtgtgcccctcgttgtgaagtcgtgcgcgatcttggccgcgtcacgtcagggaaagcaggtgcactgtcacgccattgtccgtggtctccttggggatatctttgtgcagactgctctggtggatttctatgcaaagaacggggacatggattgtgctgtgaaggtgtttgacgagatgccggtgaaggacccgataccgatgaactgcttgatcactgggtattccaagtccggtgatgtggtgaaggcgaggaggctatttgatggcatggtaagaaggacatctgcatcctggaattcaatgatcgcctgttatgcgcatggtggggaataccaggaagctttgaggttgttccgtaggatgttgagtgagggtgcaaggccaaatgcgatcactattgcgacgatgttttccatttgtgccaagactggtgatcttgaaacaggaaagtgggcaaggtctttgatcgcagagcaggatttgcagaacatgatagtgcacactgccttgatggaaatgtatgtcaagtgtcaggctattgacgaggcacgccgtgagtttgatcggatgcagcagagagatgtcgtggcatggagcactatgatcgctggttatgcacagaatgggaggccacatgaatctctagagctgtttgagaggatgaaggcaaccagttgcaagccaaatgaggtgactcttgttggtgtactatctgcctgtgctcagctgggctctgatgaattaggaggacagattggtagccatgtcgagagccagaacctaccactcaccagctacctcggatccgcactaattgacatgtacacaaagtgtgggcacgttggcagagctcgcagtgtcttcaaccggatggaacacaaggttgtcataacctggaactccatgatgagaggcctagcactgaatggctttgcgcaagatgcaatcaccttgtacaaagagatgacagaggaggacgtccagccaaacgagattactttcgttgcgctgttaacggcgtgcacccatgctggattggtagaccaaggtatgtcctttttcaaagagatgaagacaattcaccatgtttcccctcaagtggagcactgcgcgtgcatagtggacctcctctgcaaatctggaaggctgcgggaagcgtacaagttcatctgcgacatggaggtcgaaccaaacgcggtgatctggagcacgctgctgagcgcctgcagggctcacgccgacgtcgagctggccaagctcgccgcgagcaagctcctggttcttgagccggacaactcctccatctatgtcctgctgtccaacatctacgcggatgccggcctctggggcgacgtgagggagatcagggacctgatgaggagcaagaacgtgcagaagctgtctgcttatagttggatagagctggacggtgaagtgcacaagttcctggtgcaggatacgtaccacccgaaatcagctgagattttcaacgtcgtcgacggcatggggttgcatctggacgacgttgattctgaccccgatttatttgttctagagcactattga
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| Protein seq | MEAPPSLPYRHLPQHLAGLLKTRPLHDLLSDASTSRAARHLFDAVPRPTPALCGTLISALSRLCSHQELLDAFSSLHRRGSDVPPGCVPLVVKSCAILAASRQGKQVHCHAIVRGLLGDIFVQTALVDFYAKNGDMDCAVKVFDEMPVKDPIPMNCLITGYSKSGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLFRRMLSEGARPNAITIATMFSICAKTGDLETGKWARSLIAEQDLQNMIVHTALMEMYVKCQAIDEARREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNEVTLVGVLSACAQLGSDELGGQIGSHVESQNLPLTSYLGSALIDMYTKCGHVGRARSVFNRMEHKVVITWNSMMRGLALNGFAQDAITLYKEMTEEDVQPNEITFVALLTACTHAGLVDQGMSFFKEMKTIHHVSPQVEHCACIVDLLCKSGRLREAYKFICDMEVEPNAVIWSTLLSACRAHADVELAKLAASKLLVLEPDNSSIYVLLSNIYADAGLWGDVREIRDLMRSKNVQKLSAYSWIELDGEVHKFLVQDTYHPKSAEIFNVVDGMGLHLDDVDSDPDLFVLEHY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.581101 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0715900 | RBH | 0.205375 | 0.357339 | 0.283881 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g51810 | RBH | 0.138819 | 0.240226 | 0.073041 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0715900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0031500 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0031070 | RBH | 0.064362 | 0.0 | 0.479521 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0031520 | RBH | 0.0 | 0.0 | 0.342524 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0030730 | RBH | 0.0 | 0.030415 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0024740 | SBH | 4.759882 | 20.757156 | 8.871072 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0493200 | RBH | 0.4431115 | 0.887038 | 0.262543 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0030140 | RBH | 0.057182 | 0.161561 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0485100 | RBH | 0.4620455 | 1.039176 | 2.295502 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0030370 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0030320 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0030610 | RBH | 0.0 | 6.533113 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0030790 | RBH | 0.0 | 0.123501 | 0.119095 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0030540 | RBH | 0.0 | 1.425229 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G031000 | RBH | 0.0 | 0.460129 | 0.183571 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0030680 | RBH | 0.0 | 0.0 | 0.0 |
