Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_01g0029150 | OGI:01092920 | 13/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr01:29997753-29999397 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gcaggatcgtgactctcacgtagcttgaacatccaaacgcatcacttttgggggcccccgcgtcgctcccagggcagggacgacatgggaggcgactcagccgctgccgcagcaccacccctcgctgccctccttccgcctcgccaccgcccgagcgggctgccggaaaccgtgcggccgcaaggacggcggcggcggggccttctcccccaaggtcgcggcgttagccttagccctgacctatcttcggggcggcgacagcggcgctgggcgacggcgaggcggcggaggtgctgggcgacggcgagcgcaaacgacatggcgaggcggcgctgctggatccggcgtctgctgcgcggatctggcgcgagggttgccccgagccggcgatggcgcgcgcgggggcggcggggtggccagatccggcccccttctgtccggatccggagcaggaggccgagccccgaccccaggcggcaaggcggcgggtgcggctgtgcagagccggcgagggcgaggctgtggcgcggccgtacggaggcgaaggcggcatggcttgggcgtgcggagacggtggtgcagctgtgcggaagcggaggcgcaggcgctgaggtggaggcgcgggaacgagccggctggtgcggcgctggcgggaggaggagcgtcggctggctggccggccggccggccggcagcggcggaggcagcgtgtgcacgaggtgcgactggcgagagcagaggccagtgaggctcggccggtggcggcggaggcggccgtggtgcgtggaggtgtggtcgaggtgctggtgcagcgcgacgaggctgcctggcgtggaggcagtggccggtgcggcgggaggagaggccagtggcccggtgaggcgcgaccggtggcaacgcgcggagactggccagcggggggcgtgtgcagtggtgcccacgctccggcggaggttttggatggcggtggagcaatggtacatgtgtggtagatcgacaggtggtggacgacgggtgaaaacctagcctggccttggccggacaggtaacgatgacgtttagtgtcattccccttctgagggcgttgtcgtgccgtcttgcccctcaaggatggctgccgagcgaaagctcggtctcggctctctttgagaccttgacggatggcggtggcggtgttccgtcgcttatctcgttggagatgtcgtctaggcatccccttgctgaaaccccccgagcaattggtgcaagcacactctagattctcatcctcttgtggcggcgtcctaatttctacaagttggccacgtcggagggcctaagggggagaggtgttccatcttctctctcaccctctctccctgaatcctgaagtcttggatagagttggctttgtgttgattgtatgtgtcgggttttgggtgatctcggcagtattctgttgttggcctagcggcggtcggtcacacttagcgacggctggtccgatactagccttctcctggatctgtgtgttggcgctgttggtgtgtgggtggtgatataattttcttttttcctggttacgatcttccaaggttgtaatcttgtaatttttttctactctatcaatataacttcgcaccgtcaccgtctagtgcgagtcatt
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| CDS seq | atgacgtttagtgtcattccccttctgagggcgttgtcgtgccgtcttgcccctcaaggatggctgccgagcgaaagctcggtctcggctctctttgagaccttgacggatggcggtggcggtgttccgtcgcttatctcgttggagatgtcgtctaggcatccccttgctgaaaccccccgagcaattgtcttggatagagttggctttgtgttgattgtatgtgtcgggttttgggtgatctcggcacggcggtcggtcacacttagcgacggctggtccgatactagccttctcctggatctgtgtgttggcgctgttggtgtgtgggtggtgatataa |
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| Protein seq | MTFSVIPLLRALSCRLAPQGWLPSESSVSALFETLTDGGGGVPSLISLEMSSRHPLAETPRAIVLDRVGFVLIVCVGFWVISARRSVTLSDGWSDTSLLLDLCVGAVGVWVVI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_01g0029150 | OsPr106_01g0029150.01 | Chr01 | 29998804 | 29999295 | + | NAM | ||
| CDS seq | atgacgtttagtgtcattccccttctgagggcgttgtcgtgccgtcttgcccctcaaggatggctgccgagcgaaagctcggtctcggctctctttgagaccttgacggatggcggtggcggtgttccgtcgcttatctcgttggagatgtcgtctaggcatccccttgctgaaaccccccgagcaattgtcttggatagagttggctttgtgttgattgtatgtgtcgggttttgggtgatctcggcacggcggtcggtcacacttagcgacggctggtccgatactagccttctcctggatctgtgtgttggcgctgttggtgtgtgggtggtgatataa
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| Protein seq | MTFSVIPLLRALSCRLAPQGWLPSESSVSALFETLTDGGGGVPSLISLEMSSRHPLAETPRAIVLDRVGFVLIVCVGFWVISARRSVTLSDGWSDTSLLLDLCVGAVGVWVVI |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_01g0029150 | OsPr106_01g0029150.02 | Chr01 | 29997753 | 29999397 | + | IsoSeq | ||
| CDS seq | atggcggtggcggtgttccgtcgcttatctcgttggagatgtcgtctaggcatccccttgctgaaaccccccgagcaattggtgcaagcacactctagattctcatcctcttgtggcggcgtcctaatttctacaagttggccacgtcggagg |
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| Protein seq | MAVAVFRRLSRWRCRLGIPLLKPPEQLVQAHSRFSSSCGGVLISTSWPRRR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.123137 | 4.198290 | 4.008261 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0016920 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0025430 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0016800 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0016280 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0016310 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0016290 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0029330 | RBH | 7.579923 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0016330 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0029300 | RBH | 0.0 | 2.876827 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G032360 | RBH | 0.124761 | 2.781073 | 3.950665 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0037510 | SBH | 0.0 | 0.0 | 0.0 |
