Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_01g0022050 | OGI:01070460 | 13/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr01:23646579-23651025 | ||||||||
| Gene Symbol | Os_F0727 | ||||||||||
| DNA seq | taacaatttctgacatcacgtaatatacgtttagtaatgaattttattagcgtaacagcctctcagcacaccactacactgtgaaactgctgtgcatatccggatatttcataatctaaatttcagcataaagagctactaaaacattgtgcacaacattatccaaaatcactctatgaatatttgcacttttgaggtgatcccatccatgagttgcttgactatggaggatttctccctgtcgcccttgggataccttgatcctgtcggggtgggtcgatagtaattgcaactctcttcgtcagtcaaaatgatcgtctgtaaagccatagctagctccatgaccattcttacaaactccatgtatttctcctctactttgaagccagcaatcttcaggctcttcagatgcttgtgcttgaattctgaacaggtcgtctcgcaatacggcgtctcttgctgcctaccgtgtcgactgcgcatgtccttctgtatctgtgatcagcaaggtcataactttgttaggattgaacacgcatgtcacaaaacgatgactctgctatatatgtttttgaggccgtggcgacggggacggcgcggcgacggcgcggagttgggcgtggcggtggggcgccacggtgtcggctctccgcggctccagcgacgggcgacggcgtcgccagatctggtctccccgcttggccggggtgaccggcgacgggctcggtcgtcgccggcgccgctccacggacctggcaggggggtggctagcggcggcgatggtggcaggtgtggcggcgatgaagttggcgacgacggcggcggactgcggcgcgtgccgtgacgccggccctcgtcaagaacctcgttgccacgagggaggcgtggcgccctcgtcaatgctccggctgtgaacaacattcccgtgacgccttcctccacgatgccagcgacccgcgctccgcgctgcacctccgatctgcgccaccccggccggatctagacggctggcgtctggcggcgctggctagcgacagtggcggctgacggtggcggctagacggtggtggctggacgggggtgtccgtggcggtggcggtggcggtggcgatggtggctgacggtggcggctggcgacggtggtcgctgtggcagtggcggtggcggctgtcgatgatggtacctatggcggcgatggttgaaggccatcatccggctgacggtgcgtcggcggcggcggcggcggtatgtggaggcggggaaggggtctggcggcggggaaggaggagtccgggtgcgggcgcgccgtcgacggcgggaacaactgtgggcggtggccttggccaaatcgctgaagggacaatgttgttgaccgatgacgatccttcttgtgcggattggtggtgtgggtttggacagggaattgcgagcgaaaaccttgccgagccatttggcaggctgataacggcgacgccaaacgccgtttggcgtcgttcccctccttagagacgttgttttagcataccccttttctttccctaccatattctccgggtgaaaaccttgcctcggttacgaacgagcggtggcggcgatccacgtcgcatcctccttgggggcaccgctttagagaaatctcttcgtgcaaggatattgtcattggtctatgcattggcttcgaacttcagtcctaggctttgtcgaggccttctagctccacattttgttttgcttttctcagtttgtgtcctctcttctcttgtttgatgtgttcaacttgtcttgaactacactctcttctggagtggatctttgtaataattggttgtagttctttttgaacaaaggccgggatattatattccattatctaaaaaaatatgtttttgaggctgaaacttgatggagatcaagagaaagaggtactcattttgtgtcagacaaaatgcagtgccctaaagactaggtgacattattagagtggtttcagtttttagttctgtggaatgcgtattagtttcattgataacaaactgaatgaacttgcaggtaagaattaaaaaaaggcataccgaaaggttgaagttctggaggaatggtgctgcctgaaggaagaagatcatccataacaactcatattggccatcaccaagattaagcacggtcagcttgctgaaggaaccctgcaatggccttggatcctcaagttctatccaaatctgaacgaaaaaaaaaattcaaaaacaagaaactgtcagtcaactgccactcctcgcttacgaacatgagcaagatggattaaagaataaagatcgattttccgccgttcaagaaacgcagagaaagttggctgacgcttctggcattgaccaagagcttacccccccccccccccccccccgccgcgtacgggtgtctgccccgtggatgaggctgaggtcggcaaggatcggtacagagccgagggacaccggagcaccatcggggaaccagctgtcgacggagagccgcgtgagcttggggatgctgcgcagcacaaccagcactcaagctccagcaccctgagcgccgacgaccccggtgcgacgtcgatcaccagctcctcgccggggacgacgcccgtcgcagtcgaacaccgccaggtgcacagccgcgcgcgtgcacgcgctgaggaggacggcgacgtcggcgcttctcagctgcaggtgccgcagctcgagcttggtgagcgcgccgaacacgcgtggcgagtccacctcaattccaaacgaaagggtttcgaacaaaggattctttagagtaattttagaggaattcaatcttataaaacattttgttatgtggtcatttgaatcaaaagaataactaaaaaaatcatatgaatttcctttggattagctcaaaaccatgcaatttttgaaaaattctaacatgagcttcaaccacctggttgcgtcggagatcgccaagaacctggataccgcgcggcagaagcgacccgcaacccggtccagcgcgcgtttgtccaccatccatagctcgactccactcgggatgaacttcttgacgcttatccttggctccagcagcagccatgggagccaccgccaccgcctcgacaggctgcacgtcctgatcgcctccacgcgtgctgccaactcctgcaagatgagcagaaggatgtcgtccgggagagggctaatcctgtcttccccttcagcttgcctggatgtagctgcagatgcaaggtggttgcctgcgcacgaagggaagatctccatggatgctttgttctgtcccttgggaggaccatacttctcctgaaaagggatgcagcatggtaatgattaagataataagattcaaaccacaatttaccatgaatctatagccaacctaaacgaatagaataaccttagagagttaaacatccctcaaagaattcagagaagacctatgttatgtggagctcgactgctcagtaaattttgatggaacataggcttccttcgttccagctccctccgccttgtttaccgcgcgcacgcttcttaaactgctaaactgtgcgttttttacaaaaattttctatacaaaagttgcttacaaaaatcatattgatccatttttaaaaataaatatctaatacttaattaatcacgtgctaatagactgctccgttttccgtgcgcatggttagtgttgggaacacaggctaatgaacgcagtagagacctatttagtggattactttaaggctttgaaagcgtttcaccctattcagtggattactttaaggctttgaaagcgcttcaccggtcagtttcacaataatcagatcaccaaatcatccccatctctgcagttggttcactaataagaacataatgaaaacttacgaattccaccctaatccctatcaactaaaatgaacgaaaaactgaaagcaattcgacctggcctcaccatgcaagcacgaaacatttccatccaataccattcgattcgacgccaattcaaacacaggttacatgggaaaaacaaacgaatcacatttcactagaactgcacgagcaatcaagacatgggtggagggggcaggtgtactcacagccccggagatgcactgggcgtggccctggacggtctcctggctgaaggactcgccgcagtcgatgcaggagagctgccgccgcaacacaaaaaccgaaacaaatcaatcacaatccaccactttctctcacctcgagacgagcaagaccaaattaaccgaagctacagagaggggggagggaagagcaaaccctgtaggctgagcgcaggagcggaagtggccggcgagcttgggcttcttgaggtcgtcgccgccgcagtcctcgcactggaaccgcgccattgtggacgccgccgcgagctctcttgcttcacctccgacgcgtctctcgct
More
|
||||||||||
| CDS seq | atggagatcttcccttcgtgcgcaggcaaccaccttgcatctgcagctacatccaggcaagctgaaggggaagacaggattagccctctcccggacgacatccttctgctcatcttgcaggagttggcagcacgcgtggaggcgatcaggacgtgcagcctgtcgaggcggtggcggtggctcccatggctgctgctggagccaaggataagcgtcaagaagttcatcccgagtggagtcgagctatggatgatttggatagaacttgaggatccaaggccattgcagggttccttcagcaagctgaccgtgcttaatcttggtgatggccaatatgagttgttatggatgatcttcttccttcaggcagcaccattcctccagaacttcaacctttcgatacagaaggacatgcgcagtcgacacggtaggcagcaagagacgccgtattgcgagacgacctgttcagaattcaagcacaagcatctgaagagcctgaagattgctggcttcaaagtagaggagaaatacatggagtttgtaagaatggtcatggagctagctatggctttacagacgatcattttgactgacgaagagagttgcaattactatcgacccaccccgacaggatcaaggtatcccaagggcgacagggagaaatcctccatagtcaagcaactcatggatgggatcacctcaaaagtgcaaatattcatagagtga
More
|
||||||||||
| Protein seq | MEIFPSCAGNHLASAATSRQAEGEDRISPLPDDILLLILQELAARVEAIRTCSLSRRWRWLPWLLLEPRISVKKFIPSGVELWMIWIELEDPRPLQGSFSKLTVLNLGDGQYELLWMIFFLQAAPFLQNFNLSIQKDMRSRHGRQQETPYCETTCSEFKHKHLKSLKIAGFKVEEKYMEFVRMVMELAMALQTIILTDEESCNYYRPTPTGSRYPKGDREKSSIVKQLMDGITSKVQIFIE |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_01g0022050 | OsPr106_01g0022050.01 | Chr01 | 23646579 | 23651025 | - | NAM | ||
| CDS seq | atggagatcttcccttcgtgcgcaggcaaccaccttgcatctgcagctacatccaggcaagctgaaggggaagacaggattagccctctcccggacgacatccttctgctcatcttgcaggagttggcagcacgcgtggaggcgatcaggacgtgcagcctgtcgaggcggtggcggtggctcccatggctgctgctggagccaaggataagcgtcaagaagttcatcccgagtggagtcgagctatggatgatttggatagaacttgaggatccaaggccattgcagggttccttcagcaagctgaccgtgcttaatcttggtgatggccaatatgagttgttatggatgatcttcttccttcaggcagcaccattcctccagaacttcaacctttcgatacagaaggacatgcgcagtcgacacggtaggcagcaagagacgccgtattgcgagacgacctgttcagaattcaagcacaagcatctgaagagcctgaagattgctggcttcaaagtagaggagaaatacatggagtttgtaagaatggtcatggagctagctatggctttacagacgatcattttgactgacgaagagagttgcaattactatcgacccaccccgacaggatcaaggtatcccaagggcgacagggagaaatcctccatagtcaagcaactcatggatgggatcacctcaaaagtgcaaatattcatagagtga
More
|
|||||||
| Protein seq | MEIFPSCAGNHLASAATSRQAEGEDRISPLPDDILLLILQELAARVEAIRTCSLSRRWRWLPWLLLEPRISVKKFIPSGVELWMIWIELEDPRPLQGSFSKLTVLNLGDGQYELLWMIFFLQAAPFLQNFNLSIQKDMRSRHGRQQETPYCETTCSEFKHKHLKSLKIAGFKVEEKYMEFVRMVMELAMALQTIILTDEESCNYYRPTPTGSRYPKGDREKSSIVKQLMDGITSKVQIFIE
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.986712 | 0.0 | 7.100058 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0583300 | RBH | 0.0 | 0.280690 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g40120 | RBH | 0.0 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0583300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0023000 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0022630 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0022930 | RBH | 0.370398 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0022320 | RBH | 0.036184 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0378200 | SBH | 2.3047455 | 3.793409 | 2.824311 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0022000 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0367400 | SBH | 2.047959 | 3.5357535 | 13.32241 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0021970 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0021910 | RBH | 0.796277 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0022180 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0022250 | RBH | 0.140922 | 0.311435 | 0.222641 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0022030 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G022350 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0022020 | RBH | 0.0 | 0.0 | 0.0 |
