Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_01g0010390 | OGI:01026350 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr01:8504199-8506312 | ||||||||
| Gene Symbol | OsRPA14, RPA14, RPA3 | ||||||||||
| DNA seq | ttcatcagaaagcatcatactagctcacttcatcaagatgcaccggagagcataacaagaaacacagctttcaaggatccaaatgcaagcgacagtaacaatgcagcacaacgctttggtttgctttgcttagaaggagcaaacaccacaagctcttcagcaacaaaagcacacgcttgtcctcacatagcttaaggttaatatgtcttaataagcaccaatactgaccctaagtagcttgattatactgagatgactgacaaaaacagttggacggatcttaaagctagagaaatcatgaacatgagacatgctttgttggcagaatgtcttgtatgtgatgccgacctctacaggaacaaatccttcatctggccattcgcaagcttgcacagtccattgaatggtgcaggatctgcagacaaacatgatagagagatcaatggtgtaatgagggtgtctaagataaaattcttgcagcaaatgtaaagatttagcaccacatactagttgtcctgtgtcagacgagaacaaaagaaacgttgattgagattattttattaattgatacaaagaaacgctgtaacattgggcatataagctaaaatagcttttcattcccagaagtatactcatgaacttcaagagctacattttcaacttagttgaagaatgtttttccacctgaaatctactctagatgatcaatcgcaaatcgctcattcccagaagttaagcccatgagcttcaaaagctacattttaccaaccagacaagagtgcatgtcatcctaaaatctactctatgatcaatcagacacaaatttgacacaaataggggtgagattgaagttcccatacaactaaagtcaaatttggctgtaggtaaaaaaagtccaacaattaaacaatcaatattagtttttgaatgcttctggatttgggaattcgtatagaacacaaacagctacacatttacaaaggcagaaatttgctcttgtaagcatgaatacgatgaaaaatgtaacaaaacgtacttatgaaagtatgatttttatgcgaactgtacatttttttgctcaagaaaatatagaacacaagaataacgaaccccaatcactatgtaacatgttaaaaaaccattggtgggggagcatcagaataggcaagatacaggcactgtctggatttatgtaaaagataacaaactgtacagactaacaattcatagtactatttactggaggaaaagaatgcgaggcgcaacaattctcaccgaagttttcaccaaaatctgtgcaaacttcagcccggatggcctgattgggttcagcgatcccaataatctccacatagtgcgacataggggcaccggaggcccctttgatggttagctgatgaccatcggtggactgcccgataagcaacccgccttcctcgcgctgggcttggaccaccgtgcgcactcttcggccgacgaacatcttcagaatctctccattgacgaatgctgcaggtcctgatgtatccatctctgcaaaacgcatggcttttcatattcatcaacacaattcagaattaccaatctgatgacacaggcaagcaatcaaattgggatcccacaaatctcctactcctggtagttctatcacgggatcatgcctagcaagcacatggtaaatccagcccacaagttcatttaactccttgattcatttaatccaagaagggcacaaccactcggactcgggttttcagtttgcgacaggaaaatcgatgtggttccctccttgatcaccactagttcccctcctaagaaaatccagccaaggaaatttgccgttctctccagccatacctgatactgataccctagtcctaaacaggaggacctagcgatcagatctactgcagagatggacctaagcgtgaggccatcgaataaacaggaggaagagggaagagttggaggtggcgtgtacctgcttcgcttcggggggaggcggcgtcggagatggggcggacggcgccggtggcgagggttgggaggactcctgatttggggacgcacgcagcaggagagggtctacggaattctgggagctcgcggaaaat
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| CDS seq | atggatacatcaggacctgcagcattcgtcaatggagagattctgaagatgttcgtcggccgaagagtgcgcacggtggtccaagcccagcgcgaggaaggcgggttgcttatcgggcagtccaccgatggtcatcagctaaccatcaaaggggcctccggtgcccctatgtcgcactatgtggagattattgggatcgctgaacccaatcaggccatccgggctgaagtttgcacagattttggtgaaaacttcgatcctgcaccattcaatggactgtgcaagcttgcgaatggccagatgaaggatttgttcctgtag |
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| Protein seq | MDTSGPAAFVNGEILKMFVGRRVRTVVQAQREEGGLLIGQSTDGHQLTIKGASGAPMSHYVEIIGIAEPNQAIRAEVCTDFGENFDPAPFNGLCKLANGQMKDLFL |
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| Function | Replication protein A 14 kDa subunit [UniProtKB/Swiss-Prot:Q9SDK9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_01g0010390 | OsPr106_01g0010390.03 | Chr01 | 8504199 | 8505745 | - | NAM | ||
| CDS seq | atggatacatcaggacctgcagcattcgtcaatggagagattctgaagatgttcgtcggccgaagagtgcgcacggtggtccaagcccagcgcgaggaaggcgggttgcttatcgggcagtccaccgatggtcatcagctaaccatcaaaggggcctccggtgcccctatgtcgcactatgtggagattattgggatcgctgaacccaatcaggccatccgggctgaagtttgcacagattttggtgaaaacttcgatcctgcaccattcaatggactgtgcaagcttgcgaatggccagatgaaggatttgttcctgtag
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| Protein seq | MDTSGPAAFVNGEILKMFVGRRVRTVVQAQREEGGLLIGQSTDGHQLTIKGASGAPMSHYVEIIGIAEPNQAIRAEVCTDFGENFDPAPFNGLCKLANGQMKDLFL |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_01g0010390 | OsPr106_01g0010390.02 | Chr01 | 8504199 | 8506170 | - | NAM | ||
| CDS seq | atggatacatcaggacctgcagcattcgtcaatggagagattctgaagatgttcgtcggccgaagagtgcgcacggtggtccaagcccagcgcgaggaaggcgggttgcttatcgggcagtccaccgatggtcatcagctaaccatcaaaggggcctccggtgcccctatgtcgcactatgtggagattattgggatcgctgaacccaatcaggccatccgggctgaagtttgcacagattttggtgaaaacttcgatcctgcaccattcaatggactgtgcaagcttgcgaatggccagatgaaggatttgttcctgtag
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| Protein seq | MDTSGPAAFVNGEILKMFVGRRVRTVVQAQREEGGLLIGQSTDGHQLTIKGASGAPMSHYVEIIGIAEPNQAIRAEVCTDFGENFDPAPFNGLCKLANGQMKDLFL |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_01g0010390 | OsPr106_01g0010390.01 | Chr01 | 8504199 | 8506312 | - | NAM | ||
| CDS seq | atggatacatcaggacctgcagcattcgtcaatggagagattctgaagatgttcgtcggccgaagagtgcgcacggtggtccaagcccagcgcgaggaaggcgggttgcttatcgggcagtccaccgatggtcatcagctaaccatcaaaggggcctccggtgcccctatgtcgcactatgtggagattattgggatcgctgaacccaatcaggccatccgggctgaagtttgcacagattttggtgaaaacttcgatcctgcaccattcaatggactgtgcaagcttgcgaatggccagatgaaggatttgttcctgtag
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| Protein seq | MDTSGPAAFVNGEILKMFVGRRVRTVVQAQREEGGLLIGQSTDGHQLTIKGASGAPMSHYVEIIGIAEPNQAIRAEVCTDFGENFDPAPFNGLCKLANGQMKDLFL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| AF | Chr01 | 8505731 | 8506312 | - | OsPr106_01g0010390.02 | OsPr106_01g0010390.02,OsPr106_01g0010390.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 4.571334 | 10.036036 | 16.140968 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0253600 | RBH | 0.336286 | 1.445713 | 11.806312 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g14980 | RBH | 0.202332 | 0.984181 | 2.700847 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0253600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0010840 | RBH | 0.0 | 21.122400 | 2.358933 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0010500 | RBH | 0.399457 | 8.025418 | 2.966934 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0010830 | RBH | 1.561034 | 13.855632 | 12.205319 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0010340 | RBH | 0.088699 | 0.476638 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0139300 | RBH | 4.0046345 | 6.453081 | 2.272529 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0010390 | RBH | 0.0 | 0.797998 | 1.431305 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0138900 | RBH | 3.03615 | 3.1175505 | 15.6449645 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0010370 | RBH | 0.161441 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0010440 | RBH | 0.226867 | 3.757511 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0010360 | RBH | 0.0 | 7.853544 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0010510 | RBH | 0.898478 | 1.036657 | 1.712772 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0010330 | RBH | 0.146849 | 6.025068 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G010480 | RBH | 0.195005 | 6.637519 | 0.882694 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0010350 | RBH | 0.0 | 4.916731 | 5.834944 |
