Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_01g0002910 | OGI:01007320 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr01:2355130-2358927 | ||||||||
| Gene Symbol | SQD2.2, OsSQD2, SQD2, OsSQD2.2 | ||||||||||
| DNA seq | cttggttcccttccctccaatattctcctcccctcccatggaatatcccccacaattccctactccccaactccacactccaatctcttcctcctcttcttcttcttcctcgcctcgcttatatacgcggcgtgtcgagctcctcctcctcctcttccttgctccaccacaacaccgtcgactcgaggcgcacgcaaacgccggtagcgaggagaaggattgcttcttcttttttttttgtgtgtgtgtgctgtgttcttgggtttcttggcaatggtgattggggccgagatcaaggacgagatggaggaggcgccgccgctgctgctcgacgaggccgcgcgccctcgccgcgtcgcgctcttcgtcgagccgtctccgttcgcgtaaggattcttgacttttctctctctctctttcttggggttttgaggggtttcatagctggcctttgcacgcattcttgtccagatcgatgagtctgttcactactttcttgtggttgcttggtttgtcgaaagagtttttggatccttctcgggtcttgggattcgtgaagataggacaaaaatggagtaaacttcaggtgaattaagtgtggagattaaggaagccaacccccaattagctgatgaattagtattatatttttttgattaagatgaattagtagtagtaaggacgggaagcgaattattgcatttttcttgcctaatatgagcagaggaatgacctatattgttcattctggtttgaatgtttgattcgtattttgagcaagttttcatctttcatgtttcatgtttgcagttacatctctgggtacaagaaccggtttcagaacttcatcaagcacttgcgcgaaatgggggatgaggtaaattcagcaaaaagctagaaatgttgaaaattataggttgctagtttgtgacttcattttgtacatgtcttgtgcgtgcaggtgattgttgtgaccaaccatgagggggttccccaagaattccatggtgccaaggttattggttcatggaggtaaactcaagatacttctttctacttttatatcttaggatattagcagcttaggcagtagctactgaactaccgaagatctcaagacttgtaaaactactgtttcgaaaacgaaaatggggaccacctaatgagcaccaacactgcaacagaaactttaactaccacaattacggtctacttcatgaacagtttaatttctaatttagttgatacagttagggtttaggtcattccgttagttatagctcaattcataaaccaattcaagtaccagcttcttaaaataatctagttatatgaactagtaaatacagtatactagatatcaagctttgaaaagtggaagcatcagaatcttttttgttgaatcatatgatatgtagtgccttttggtggcctattattgtgtttacagctgtttgctcatcctttccagctttccctgtccaatgtatggaaaagttcctctctcgctggcactcagtcctaggattatttcggaggttgcaaagttcaagcctgacatcattcatgcatcctcacctggaattatggtaatttcatactgacaaccaagctaatcatcaaatattgtctactacttaaccactaaatttgatgcctctctgttggacatacaggtttttggggcacttgctattgctaaactgctcggtgtccctctagtgatgtcctatcacacccatgtcccagtgtaagtaaatactgaattatactgcaacagattcttttttttttcctgggcaattcagtagtttactgttcatatttcatttcaggtttttttattgtaaagtttatgaccaaccataaaaagggatttgcatatattatagatgtatgttgatatttgatcgccatttcccagtaaaagccttttagcgggtggcaatactggaagtattatatgaactattttgaactattcatcatagctgtactaatgtttttccccctgcagatacattccaagatatacatttagctggcttgtagagccaatgtggcaagtcataagtaagcattatactcccatttcatttatactttcataaacagtcagatttttatgtgatgaaaacattgattcgatccggcaaacagggttccttcatagagctgctgatctaacattagtgccatctgttgctatcagcaaagattttgaaactgcccatgttatatcaggttggtccatatctgtattacatgttcagatcttattttctgccttcttggtatgcactgtgtacccatgtcaataatatatatgttacctccttgttcagctaatagaatacgcctttggaacaaaggtgttgattcagccagtttccatcccaagttccgcagtcacgaaatgcgagttagactaaggtggcatcatacttcatttccctctgaatttcccgtgcatggttgagattaattgcttacatacacttctgctatatatctattcttttcagtgacggtgagcctgaaaaaccattgataatccatgtaggacgctttgggcgtgaaaagaacttggattttctgaaaacgtgagctatatacttactacactttgtgttttatgtggtttttgacttacttttgacaaacatgattaacaccatattcttctctgtgtcttgcactaaatgttcttcgatctaattttgaatcatgactgagcagggtaatggataggctgcctggagtaagaattgcatttattggagatggaccatacaggtatatcatatgtggttccttgccattttatatactatatctttttttttcctaagcttccagtttgtcatgaacagcggcagctcaaaacttattgcattgtcggtttacagaaaatgttcattggacaccttcggtgaatcaattactttgagctttttgccactagtgtgccttacatgctctctgcaattacatgacaggagtgagctggagaagatgtttgaggggatgcctgccgtgttcactggaatgatgcaaggcgaagagctctcacaggcatatgccagcggtgatgttttcgtgatgccctcggagtccgaaacacttggtcaagtagtcctggagtccatgtcatctggagtcccggtcgttgcagctcgtgctggtggtgttcctgatataattccagaagatcaggaagggaagaccagcttcctgttcaccccaggagacctcgaagactgtcttggcaagattcagctattgctgacggacaaggaattcagagacaacatggggatgacggctagagccgagatggagaagtgcgactggagagcagcttccaagaagatccgcaacgagttctacaatgctgccatctggtactggaggaagaagcgcgcagaattgatcaaaccgttgcagtggctggcgcagatgttcctaccagcacctgaggccaacagaatcacacaacactgaagcctcaaggggatgcttctgcagccatgatccggtccttgtaaatttctgatctatagtgcagtgtcaataggtgagatagttcctcttttttttgtatggaattggaattgtgaatggtatggcaaagccatttgttgcctgtattgttgtagtggacaatgtgttgccttgttgggacatgatgtgatgaactgtatttgattataatccacggcatcaacacatcaagatgctattgtgcacgcaatgaaaagtttggtatcaactcttgagatgctgaactttctcagc
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| CDS seq | atggtgattggggccgagatcaaggacgagatggaggaggcgccgccgctgctgctcgacgaggccgcgcgccctcgccgcgtcgcgctcttcgtcgagccgtctccgttcgcttacatctctgggtacaagaaccggtttcagaacttcatcaagcacttgcgcgaaatgggggatgaggtgattgttgtgaccaaccatgagggggttccccaagaattccatggtgccaaggttattggttcatggagctttccctgtccaatgtatggaaaagttcctctctcgctggcactcagtcctaggattatttcggaggttgcaaagttcaagcctgacatcattcatgcatcctcacctggaattatggtttttggggcacttgctattgctaaactgctcggtgtccctctagtgatgtcctatcacacccatgtcccagtatacattccaagatatacatttagctggcttgtagagccaatgtggcaagtcataaggttccttcatagagctgctgatctaacattagtgccatctgttgctatcagcaaagattttgaaactgcccatgttatatcagctaatagaatacgcctttggaacaaaggtgttgattcagccagtttccatcccaagttccgcagtcacgaaatgcgagttagactaagtgacggtgagcctgaaaaaccattgataatccatgtaggacgctttgggcgtgaaaagaacttggattttctgaaaacggtaatggataggctgcctggagtaagaattgcatttattggagatggaccatacaggagtgagctggagaagatgtttgaggggatgcctgccgtgttcactggaatgatgcaaggcgaagagctctcacaggcatatgccagcggtgatgttttcgtgatgccctcggagtccgaaacacttggtcaagtagtcctggagtccatgtcatctggagtcccggtcgttgcagctcgtgctggtggtgttcctgatataattccagaagatcaggaagggaagaccagcttcctgttcaccccaggagacctcgaagactgtcttggcaagattcagctattgctgacggacaaggaattcagagacaacatggggatgacggctagagccgagatggagaagtgcgactggagagcagcttccaagaagatccgcaacgagttctacaatgctgccatctggtactggaggaagaagcgcgcagaattgatcaaaccgttgcagtggctggcgcagatgttcctaccagcacctgaggccaacagaatcacacaacactga
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| Protein seq | MVIGAEIKDEMEEAPPLLLDEAARPRRVALFVEPSPFAYISGYKNRFQNFIKHLREMGDEVIVVTNHEGVPQEFHGAKVIGSWSFPCPMYGKVPLSLALSPRIISEVAKFKPDIIHASSPGIMVFGALAIAKLLGVPLVMSYHTHVPVYIPRYTFSWLVEPMWQVIRFLHRAADLTLVPSVAISKDFETAHVISANRIRLWNKGVDSASFHPKFRSHEMRVRLSDGEPEKPLIIHVGRFGREKNLDFLKTVMDRLPGVRIAFIGDGPYRSELEKMFEGMPAVFTGMMQGEELSQAYASGDVFVMPSESETLGQVVLESMSSGVPVVAARAGGVPDIIPEDQEGKTSFLFTPGDLEDCLGKIQLLLTDKEFRDNMGMTARAEMEKCDWRAASKKIRNEFYNAAIWYWRKKRAELIKPLQWLAQMFLPAPEANRITQH |
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| Function | Sulfoquinovosyl transferase SQD2 [UniProtKB/Swiss-Prot:Q8S4F6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_01g0002910 | OsPr106_01g0002910.01 | Chr01 | 2355130 | 2358927 | + | NAM | ||
| CDS seq | atggtgattggggccgagatcaaggacgagatggaggaggcgccgccgctgctgctcgacgaggccgcgcgccctcgccgcgtcgcgctcttcgtcgagccgtctccgttcgcttacatctctgggtacaagaaccggtttcagaacttcatcaagcacttgcgcgaaatgggggatgaggtgattgttgtgaccaaccatgagggggttccccaagaattccatggtgccaaggttattggttcatggagctttccctgtccaatgtatggaaaagttcctctctcgctggcactcagtcctaggattatttcggaggttgcaaagttcaagcctgacatcattcatgcatcctcacctggaattatggtttttggggcacttgctattgctaaactgctcggtgtccctctagtgatgtcctatcacacccatgtcccagtatacattccaagatatacatttagctggcttgtagagccaatgtggcaagtcataaggttccttcatagagctgctgatctaacattagtgccatctgttgctatcagcaaagattttgaaactgcccatgttatatcagctaatagaatacgcctttggaacaaaggtgttgattcagccagtttccatcccaagttccgcagtcacgaaatgcgagttagactaagtgacggtgagcctgaaaaaccattgataatccatgtaggacgctttgggcgtgaaaagaacttggattttctgaaaacggtaatggataggctgcctggagtaagaattgcatttattggagatggaccatacaggagtgagctggagaagatgtttgaggggatgcctgccgtgttcactggaatgatgcaaggcgaagagctctcacaggcatatgccagcggtgatgttttcgtgatgccctcggagtccgaaacacttggtcaagtagtcctggagtccatgtcatctggagtcccggtcgttgcagctcgtgctggtggtgttcctgatataattccagaagatcaggaagggaagaccagcttcctgttcaccccaggagacctcgaagactgtcttggcaagattcagctattgctgacggacaaggaattcagagacaacatggggatgacggctagagccgagatggagaagtgcgactggagagcagcttccaagaagatccgcaacgagttctacaatgctgccatctggtactggaggaagaagcgcgcagaattgatcaaaccgttgcagtggctggcgcagatgttcctaccagcacctgaggccaacagaatcacacaacactga
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| Protein seq | MVIGAEIKDEMEEAPPLLLDEAARPRRVALFVEPSPFAYISGYKNRFQNFIKHLREMGDEVIVVTNHEGVPQEFHGAKVIGSWSFPCPMYGKVPLSLALSPRIISEVAKFKPDIIHASSPGIMVFGALAIAKLLGVPLVMSYHTHVPVYIPRYTFSWLVEPMWQVIRFLHRAADLTLVPSVAISKDFETAHVISANRIRLWNKGVDSASFHPKFRSHEMRVRLSDGEPEKPLIIHVGRFGREKNLDFLKTVMDRLPGVRIAFIGDGPYRSELEKMFEGMPAVFTGMMQGEELSQAYASGDVFVMPSESETLGQVVLESMSSGVPVVAARAGGVPDIIPEDQEGKTSFLFTPGDLEDCLGKIQLLLTDKEFRDNMGMTARAEMEKCDWRAASKKIRNEFYNAAIWYWRKKRAELIKPLQWLAQMFLPAPEANRITQH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.950491 | 3.677422 | 5.542713 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0142300 | RBH | 0.773795 | 0.000000 | 3.121789 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g04920 | RBH | 0.523280 | 0.000000 | 0.803609 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0142300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0002930 | RBH | 0.086039 | 1.386568 | 1.659001 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0002850 | RBH | 0.000000 | 0.570738 | 1.025535 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0002970 | RBH | 0.667560 | 4.744657 | 4.676602 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0002790 | RBH | 0.254953 | 0.313739 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0000030 | RBH | 33.525520 | 0.000000 | 40.664341 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0039000 | RBH | 4.91685 | 1.6242425 | 1.347682 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0002830 | RBH | 0.102529 | 0.876867 | 0.227517 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0039700 | RBH | 11.9267575 | 1.0704635 | 16.902441 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0002730 | RBH | 0.131620 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0002900 | RBH | 0.581463 | 4.825938 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0002930 | RBH | 4.390341 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0002980 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0002840 | RBH | 0.249674 | 2.428988 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G003030 | RBH | 0.247676 | 3.224432 | 4.174426 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0002870 | RBH | 0.253330 | 4.214345 | 4.560814 |
