Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_12g0634800 | OGI:12069950 | 8/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr12:27210339-27213148 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GCTGTAAGTTTTCATGCTTGCCTTCTTTTACTGTCAAAACTAGATGTATGTATCTAAAAGGGTATTTTCATGGTAAAGAGTATATGTGTTTCACAAGTGCAGGCAAGACTGAGTTACCCATTAATTCCAACAACATGCTCACAAAGAATTGAAGGCAACTCGCAACTCATCAGAAAAAATCAATGTGAAAAGTGTTCAGAAACTATCCTATCGACTTCTTCTGCCCATCATGAGGTTAACTCACAACTCCAACTCTCATCACGAAGATCAAGAGCTCATCAGGTATCGATTCATCAGTCGCTCATGACCTCACTTCCATCTGAATGCTCAGAAGCATCAGTAACACCCCCCAGATCTTCACCCTCCCCACTGGTTTCCATATCATCAACTTCAGACTCTTCATCATCAGTATCCTTGTCCTCATAAATTATCGGCGGGGATCCTTCTTCCTCTCCGGATCCATCATCGTCAATCTGGGAGATACATACTTTCAGTTATGGATTTGCAATGCTCAAAATGATGGCACTTGCTGGTGGGGTAAAAGTAAAACTTACCTCACTGAAAAGATAATCTAGACAGGTAGACAACTGCAGCGATGATTTGAAGGTCGATGTTCTTGCATCAATTAGCTGAGAGAAATGCAATCAGTAATAGTAAAATCCAAAAATAAACATGAGCACATGACTTATAATTGTTATTATGTCTCCACTAGTGCACTAAAAGCTGACATATTCACAGTAATTTTGACATCCACAAATTCCAAGGGGCTGTATAGCCTAGATGCAGACATCCTGATGCACATCACTAAAGGAGGTTGTAAGTGGTGCATACGGAGACAACTCTTTATGCAGTACAGGCCATACTTTGCTGCTAATGCTATAGGTATGTAAACTCTCAGAGGTATGTTGCATATATATATGGAAATAATCCCACGAGTCAGAAAGAATATGCAGTCGGTAACACTAACATTCAAAACAAAAATGACCTGCAATCTGTCTCTTCATGTCTGAGCTATAGCGTGCATACTGATACATTCAAGATAATAATTGGCGCTAAACAGGTTACTTGAGAATACGGTGCTTAGATATCCAGAGGCTAGTATCATTCAGGAGGCCACCATCTGGTATAGGTAAAGAAAGCTCTCAACTTCACTTCACGTGGGGCAGTAAAGTTCTAAATCAATCACCAGGAAATGATGTGCTGGTTTTTCAAAAAAATATTTGTTGCTCCAAAGGATATAAAGGAAAAACATATTTTAAACAACTCACATGATAGAGTGAGTTGAGAAGAAGCTCAATTACTGAACAATATCCTTCACATAAATGTAGCTAATTGCTACCTATGCAATCAGAATTAGTTAATAAATACTCACATGATAGAGTGAGTTGAGCAGAAGCAGAGAAGACTCCTGAGAAACTATGCTACTCATGTGTTGACTGAGCAAACTTTGCAGCCATGGGAGCAAGGAAACCAGCACTGCACCCCTGACAAAGGGGAAAAAATGGAAAACATAAGACCTCTACGTCAAAATATAACCAAATAATCTTGGCAGTATGTAAATATAATCATTGTTTGAGTAGCCCATGAAAATCCAGTCAAACATAGATGCAGAAAAAAGAATTGAAGCTCTCCTTTTTTTCATGTCTACTGATGAATTACATAATAACCCGAATTGTATATCCTAAGCCCATCTTCTTTGTACTGAATTGCAAAAGTGCGTCTAACGAATTATCCTACCTCGATTGCATAAGCAATATGAAGAACTTGAGAAGCTTCACAGCGTCTGCTGGTGTAAGAAGTGATATTGAATTAACAATGACCTGCACAGAAACCAACACTGAAATTATCAGATTTGATGACCAAATTGCATCAAGGATTAGTCAATGTTAACTTATAACATCTCTCAATAACAGGTAAGAATTAGTGATTAACACTAGCAGAGCAAGTGATGAATAAAATCATATTTCAGTACCACGAAAATCTGGCGATATAGCCGAATGCAGTGCAAGTGAAACGGCAGGCAAGCATCGCATTGCATCATTGCAAGAAGGGAAAACCATGACGATACCTTGTGGTCTTTATTGTACAAGCAATTGAGCAAGGATGCGTGGTCATCAGCCCGCAGAGCCTGCTTGAGCAAGACGTGAACCGAGTCCGCGCTCGGCGGCATCACCACGGGGAGTGGCTGCTCCTGGGTAGCTTCACCTGCTGTCCCGTCGCCTCCTCCGTTGAGCAGATTCAGGGTGGCCAGCTTTTCCTCCATGGTGGGTTCGTCAAGATTATACTCCGGATTAGCACCACTGTCGTTGATTGCATCTGAAACATAGACACCAAGGGCATGTTCACTTTGATGCCAAAAAAATACTTACCAAATTTTGGCATTGCCGAAATTTTAGCAACTTGTCAAAATTTTGGCAAGATTTCTTATATAGTTACCAAAATTTGACAGCAAACTAAATATAGCCATTTTTTGGCAACTTTATCAAAATTTGGTAAGGTTGAAAATGACATCAAAGTGAACAGGTCCCAAATCATGCTGTCACCAATGGCTGTTCAGAGAGCTCGCGTTTATCTGTGCCAGCGGCTAGCCTAGACAAGCAGGGAAAAAACCAAGAACTGAGGAACAGGGTTACCTGATGGCAGGGGAGCGCCCGGGGCAGGTTGCCTCCGGCGGCGCCGGCGAGTGAGGTCCATCCGCTTACTTCAGCACGCAGCTGGCGTCGGCGCCGGTGGAGACAAACGAAGCGAGAGAGCAGCGGCGGCGGCGGCGGCGGAAGAAGAGAGAGAGGGGGAGAGAGAGAGAGATGAAG
More
|
||||||||||
| CDS seq | ATGGACCTCACTCGCCGGCGCCGCCGGAGGCAACCTGCCCCGGGCGCTCCCCTGCCATCAGATGCAATCAACGACAGTGGTGCTAATCCGGAGTATAATCTTGACGAACCCACCATGGAGGAAAAGCTGGCCACCCTGAATCTGCTCAACGGAGGAGGCGACGGGACAGCAGGTGAAGCTACCCAGGAGCAGCCACTCCCCGTGGTGATGCCGCCGAGCGCGGACTCGGTTCACGTCTTGCTCAAGCAGGCTCTGCGGGCTGATGACCACGCATCCTTGCTCAATTGCTTGTACAATAAAGACCACAAGGTCATTGTTAATTCAATATCACTTCTTACACCAGCAGACGCTGTGAAGCTTCTCAAGTTCTTCATATTGCTTATGCAATCGAGGGGTGCAGTGCTGGTTTCCTTGCTCCCATGGCTGCAAAGTTTGCTCAGTCAACACATGAGTAGCATAGTTTCTCAGGAGTCTTCTCTGCTTCTGCTCAACTCACTCTATCATCTAATTGATGCAAGAACATCGACCTTCAAATCATCGCTGCAGTTGTCTACCTGTCTAGATTATCTTTTCAGTGAGATTGACGATGATGGATCCGGAGAGGAAGAAGGATCCCCGCCGATAATTTATGAGGACAAGGATACTGATGATGAAGAGTCTGAAGTTGATGATATGGAAACCAGTGGGGAGGGTGAAGATCTGGGGGGTGTTACTGATGCTTCTGAGCATTCAGATGGAAGTGAGGTCATGAGCGACTGA
More
|
||||||||||
| Protein seq | MDLTRRRRRRQPAPGAPLPSDAINDSGANPEYNLDEPTMEEKLATLNLLNGGGDGTAGEATQEQPLPVVMPPSADSVHVLLKQALRADDHASLLNCLYNKDHKVIVNSISLLTPADAVKLLKFFILLMQSRGAVLVSLLPWLQSLLSQHMSSIVSQESSLLLLNSLYHLIDARTSTFKSSLQLSTCLDYLFSEIDDDGSGEEEGSPPIIYEDKDTDDEESEVDDMETSGEGEDLGGVTDASEHSDGSEVMSD |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0634800 | OsNip_12t0634800-01 | Chr12 | 27210339 | 27213148 | - | RAP2018-11-26 | ||
| CDS seq | ATGGACCTCACTCGCCGGCGCCGCCGGAGGCAACCTGCCCCGGGCGCTCCCCTGCCATCAGATGCAATCAACGACAGTGGTGCTAATCCGGAGTATAATCTTGACGAACCCACCATGGAGGAAAAGCTGGCCACCCTGAATCTGCTCAACGGAGGAGGCGACGGGACAGCAGGTGAAGCTACCCAGGAGCAGCCACTCCCCGTGGTGATGCCGCCGAGCGCGGACTCGGTTCACGTCTTGCTCAAGCAGGCTCTGCGGGCTGATGACCACGCATCCTTGCTCAATTGCTTGTACAATAAAGACCACAAGGTCATTGTTAATTCAATATCACTTCTTACACCAGCAGACGCTGTGAAGCTTCTCAAGTTCTTCATATTGCTTATGCAATCGAGGGGTGCAGTGCTGGTTTCCTTGCTCCCATGGCTGCAAAGTTTGCTCAGTCAACACATGAGTAGCATAGTTTCTCAGGAGTCTTCTCTGCTTCTGCTCAACTCACTCTATCATCTAATTGATGCAAGAACATCGACCTTCAAATCATCGCTGCAGTTGTCTACCTGTCTAGATTATCTTTTCAGTGAGATTGACGATGATGGATCCGGAGAGGAAGAAGGATCCCCGCCGATAATTTATGAGGACAAGGATACTGATGATGAAGAGTCTGAAGTTGATGATATGGAAACCAGTGGGGAGGGTGAAGATCTGGGGGGTGTTACTGATGCTTCTGAGCATTCAGATGGAAGTGAGGTCATGAGCGACTGA
More
|
|||||||
| Protein seq | MDLTRRRRRRQPAPGAPLPSDAINDSGANPEYNLDEPTMEEKLATLNLLNGGGDGTAGEATQEQPLPVVMPPSADSVHVLLKQALRADDHASLLNCLYNKDHKVIVNSISLLTPADAVKLLKFFILLMQSRGAVLVSLLPWLQSLLSQHMSSIVSQESSLLLLNSLYHLIDARTSTFKSSLQLSTCLDYLFSEIDDDGSGEEEGSPPIIYEDKDTDDEESEVDDMETSGEGEDLGGVTDASEHSDGSEVMSD
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 1.532663 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g43830 | RBH | 0.000000 | 0.0 | 0.387569 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0634800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0022060 | SBH | 0.019878 | 0.0 | 0.903082 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0022150 | SBH | 0.0 | 1.906125 | 0.760091 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0022510 | SBH | 0.0 | 5.685009 | 1.026613 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0021460 | RBH | 1.744725 | 2.877584 | 1.191440 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0366100 | RBH | 1.546339 | 1.910715 | 10.5460765 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0398400 | RBH | 2.1094815 | 1.4728635 | 6.1585875 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0021590 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0021830 | RBH | 0.193017 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0021690 | RBH | 0.000000 | 11.622520 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0021790 | RBH | 0.288309 | 0.0 | 0.612317 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G021480 | SBH | 0.069651 | 0.592689 | 0.577831 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0021220 | SBH | 0.0 | 0.0 | 1.548340 |
