Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_12g0621000 | OGI:12067910 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr12:26455020-26461940 | ||||||||
| Gene Symbol | UBP4-8, OsUBP4-8, OsUBP8, UBP8 | ||||||||||
| DNA seq | TTCAAAACCAAAATCAAATCAAAAAAGAAAAAAAAAGGTGAAATCCCTCACGCCTCGCGTCGCCGCGCCGCGCCGGGCCACCGCGACGGGGCGCAGATCCCACCGCCGCAATGCCCGCGACCCCCGACGACGACCCACCGGCGGCGGCGAGCGAAGCCCCGTCGACCTCCTCCGCGGCGGCGGATGAGGACGACCGCGTCTTCCTCGTCCTCCACAGGTACGAACGAACCCTAGGGCTAGCCCTAACCCCCACCACCCCCCGTAGCTTGGATCGGATCGGGTGGGTGGCTGACCTGACCTTGGTGATGGGGGCGAATGCAGGTGGTGGAGGGAGGCGCAGGAAGGGGGAGGGATCGAGGCGGCCGGGGTGCCGTACGCCGCGGCGCCGTCGGGCCCGACCTCCTACGGCATCGGCATGAAGGTGCTCAGCATGTTCATCTCCGACCAGGCCTTCACCCTCCGCCGCGCCGACGACCTCCTCCAGCCCGACGCCTCCGCCTCCAACGCGGCCTCCTCCAGGACCTACGCCCTCGTCGCCGCCGACCTCTTCTCCAAGGCGCGCGCCTGGTGAGAAGACAAACACACGCTCGCTCTCCTTTCACCTCCACTCGCGATGATGATAGATGGGTTTCCTATGTTTTTTTTTTACAACTTCTCCATAGGTTTGATCCGATGATCCTATCGCGCTACATTGAGAACCAGTCGTGAGCAATGCATAGTGTGTTAAAATCCATGGTTGATGATTACTGAAGGAGTAGGGTAGCGGCTACGTTGTACTGTTGATCGCCTCATGTGGTATTGTGAATATATGCAAATCGTAGCTACACTTGCTTCTGAAATCGACTCACATGGTGCTGGTTTCCTTGCTGGAGCTTTGGACAGGGGTTCTCCCTTGTGTTACATGTTTCTGTAAGAGGAAAAACAGCTGCACAGAACTAGATATATTAGATCGCTCATGGCTGGTATTGTCATGACATATTCCACGTCCAGTTGTTTATCCTCGTGTTGATGTCTAGGGTTTATTACTATGGCACGACGTGGAGGTGGTTTCTAGTGGCGCGCCAACCATTATGGTCTATAATTTGTAATTAATATACGAGGCATCCCCATTAACTTCCATGATAACAAGTTGTTGCATTTGTGCAAGCCTTATTTTAATACATTCCCGTGAAGAGATTCACAATTAATCCTATGAATCAACATTCCCTAGTTCTCTGACATCAACTTTGCATCGAGGCATTGAAGCGGATAATTACATCTTCTATCTAGGATACTACTAGTAGCGGCATTGCTGAGTCTACGCTATTTAGTTTAATTTATCCATTCTATTAGAACTTAGATTTTCCATGCTGGCGACTTTCAGTGAAGGTTCACAATTAGGCTGTTGCATTGGAGCCTTCAACTGATTGATGGATCATAGCAAGAAATAATGCACTTCTTTGGAAATGTTTCGAGTCTGAACCATGTAAAAGTCTCTTCTTCTGAATATAAGGGATTAAACTATAAGCATTAATATGTCAACAGAATGCTGCATTTATGAGTTAGGGCTGGCAGCTATCTAAAATATGCACAGCTGCCAGGTACTATTACACTTCCTTTTGTTGCTTGCTTGCTCTGATGACTTTACTTTTTCAAAGCCTAATTGATTTCTTGATTCTTTTTTCATGTAGGCATATTGATTCTGGCAAGAATGCGGGGAAAAAATCATTGTCTATCGAAGAAGGATCTGTAAACATTTACCCTATAATGCTCAGAGTTTCAGTCACGCGAGATACAAATGCACTAACCGTGAAGATCAGCAAAAAGGTCTAGTTATTTTCCATTTTATTCATCTATTAATCACAGATTTTGTGTTCTGAAGGATGAAGTTTTGGTTTAGTAATCTATCCCTAGAAAAAACTTTTCACTTTGTTCTAAACATTTCAGGATAATTCTGCTGAGAACTTTAAACGGGCAAACAAGATTTTGACTTCAGACTCTGAGCCGGTATTTTTTTTTCTGATGATTTGTTTTTCAATAAGTAGGATGAATGCTCAAATTATTTTACTTTAACATGTCCATATTGTCTTTAGGTTCATATATGGGATTTCTCTGGACGAACAACTTTTATATTGATGAACGAATGGAATCGAATGCCCCAAGACACTCGGTCTTCTGATCAGGAGGTCAATCTTATTACTACTACCTTGTCATATTCTAAAATTAATTATTTAATTGTATGCAACTTCAGAACATTCTCCCTGCTTACTGTTGCCTGGATGTTTACTACTACTTAAGTTATATTTCAATATGAACTTAGTCAACCCCTTTCCACTCCCACCAATTTTCTCCAAATGCAGTCTATTTGCAATTTGATTTGCTGAAACTTGAGGGAATAGCTAGCAGGCTATCCACATGTCATAGCCAGGATCAACCACTGTATATATGCAGGCATCTAAATCATATATATATATATATATATATTTCCGCATGTCATAGCCAGGACCAACCACTGTATATGCAGGCACCAAATAAGTATTTCCGCATGTCACTAAAACGTGTGGGACCGGTCTCACTCAAAACATGCAAAATGAACTTTCGGATGAGGATTGAACTTTGGCCCATCACTATATCGTTATATCCGGTAACAATAGTTATTCTTCCAATACACGTGTGCTGCTAGTTAATCCAGACTGACCAGGCATGATTAAGTTCAGATAAAAACCTGACATTTCTGAACTTATGGTATCTGCTAGGTTTTGTCCACAGTTTCGTCTTTCATTGTCACTAGCTACTACCTCCCATATAATGTTCTTCGTAGCATGTTTTTTTTTTCTTATCCTTAATTCTTCTTTTACATGTTCAGATGCCTCTAGAAATACACTTCTATGATCTGTCAGAACCTACGGCAAATGGTACCAATGGGAAAAAAGATGAGTTAGCATTAACAATGAGTCGTTCAATGAGCAACGGCAGCATCATGGGCATGGATCTGGATTCAAGTGGAAGCTCTAAGCAAGTTGGCACTGGTTTAATAGGACTAGACAATCTTGGAAACACATGTTTCATGAACAGTGCAGTGCAGTGCTTAGCTCATACATCCAAGCTGGTTGACTACTTCCTTGGAGACTTCTATAAAGAAATAAACCATAATAACCCACTGGGGTTGAAGGCATGTTGAAATTCCTTTCCACATAGACATACTTCATGTATTATGCGAATTTATTATTTTGCTTCTTGAACTCATTAGAACAATGTGTTAATGTTAAATAGGGTGAGCTTGCGTATTCATTTGGGGATTTGTTGAGGAAGCTATGGGCTCTGGACAGGACCCCTGTTGCGCCTCGCCAATTTAAAGGAAAGCTTGCGCGCTTTGCCCCCCAGTTCAGTGGCTTTAATCAACATGATTCCCAGGTTAGTTAATTTTATTTTTGAGAATACACAGTTTTTCGTCACTTCCAAACACACACCCTGAATTATATCTTATGGTGGACCCTATTCTATGATTTGCAATTTGTTTGCCACTTAATCCTAGTTCCTACCTATACCAGCTTCTGAATCAAATACCCTAAATTTCTTAAGTTCTGGTGCTACTCTGCCAATTTGATTGATAAGTGCTCCAAACCTACGATTTTTAGGGTCTATTCTATTTCTTAAAAATATATTACTCCTATATTTCTATTTGGTATTTTTGTGATAAACTTACATAATAGACACCTAATACCTAAATGATTTTGTCTACCGATGGTGCTTGTAGGAGCTTCTGGCTTTCTTGTTGGATGGACTCCATGAGGACTTGAATCGAGTGAAATGTAAACCATATTCTGAAGCAAAGGATTCAGATGGCCGTCCAGATGAAGAGGTCGCAGATGAGTACTGGGGAAACCATATAGCCCGGAATGATTCTATCATAGTTGATATCTGCCAGGTTAGTTGCATATGATTGCAACGTCACTCTCTCTCTCTCTCTCTCTCTCACACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTTCTCTGTGTTGATAATACTTGTCCTTTTGGATAAAGGACACGATCTCCAAAAATAAATATATGATTTTATTGAAGTGCTACCTCCGTTTTTTGAACTTTTTCCAAGTCAAACTTCTTTATGGTTTGGCCAAGTTTATAGAAAAATATAGTAATATTTTCAATGCGAAACAAAGGAACTATCAAAATATGTTCAATGTTAGATGTAATGAAACTAATTTGGTCGATAGAGAAAAGGTAGCGTAGGACAAATAAAATTCCCTTCTCTAGCTGGGGTGGTTGTTGCATTATTGTTTCTTCTGCCAAAATGGACACATGTAAGTCACATGGTTTTATCTCCTGTTGATCATCTTTTGGTGCTCCATTGACAGGGTCAATACAAGTCGACGTTAGTTTGCCCTGATTGCAGGAAAGTATCTGTAACATTTGACCCATTCATGTACCTGTCTTTGCCCCTGCCTTCAACAACTATGAGAACAATGACTATAACAGTCTTCAATACCGATGGGACTACTGGGCCATCTCCGTATACTGTGAGTGTACCGAAATCTGGAGATACAAAGACTCTTATCGATGCATTAAGCATTGCTTGTTCCTTGAAAGGCGACGAGCGCCTTTTGGTTGCTGAGGTATTTTCCTTTTCCCTACATTATCATTATAATCCCGAGTGCTACTGAATATGCCTTGCATACTTATTATTTGATGATCTCTACATAGGTCTACAATAGTGCACTTATCCGGTACTTGGAGGAACCTTCTGAAGTCATCTCCTTGATCAGAGATGGAGATCGCTTGGTTGCATATAAACTTCCAAAAGACAGTGAAGATGCTCCAATAGTGGTGTTCAGAAACCAACGGATGGAGTAAGTACAATCTCATTTTTTACGTTGTGTTGATCTAACTGTCTAAGTTGGGTATTAAATATATGAATGTTGCTGTTTTTTATAAGCAGGTCCACCCTCACTAGTTTTGGCAGAAAATCCTGGAAGTCTTTTGGTACACCCCTTGTGTCAAGTCTTCCTGACACAATCAATGGGAGTACGATCTTTGAGCTTTACCAAAAGGTTATGACTCCATTCCGAGTACCAAAAGATGATAGTTCAGGTGCTGACCACATAATTGGCAAAAGCAGTCCTGTGGAGGAAACCACGGACGTTGATATGAACTCTGATGCAACAGAGTCAACCAGCATAAACAATAACGATTGTGACGATGAAACAATGACTGAAGATGGAATGCAATTTTACTTTATCAATGAGAGGTTTCCAGACCAACGCATGAAGATAGAAATGGACCAACCTATTAGACTTACTGCTTCACAGAAGCGACTGCATGTGGTTGTGTGTTGGCAGGACAATGGACTAGAGCAATACAATTTTAGTTCTTTAGATAATCTTCCAGAGATCTACAAGGCTGTCCTATTCTCAAGGAGACCACAGGAGACATGTTCTCTATATGCATGCCTTGAAGCTTTTATAAAGGAGGAACCGTTAGGCCCAGAAGACATGTGGTATAATTTTTTTATTTTTTATTTTTTATTTTACATTTTTCAGTGTTATATTTTGTAGTGGTTATACTTTTCCTTTCTTTATAAGATTAGAGATGATTCTTTACCCAAGTAAAGATGTTCTTCTTTCCTTTTGAAGTCTTTCGACGAATATAAATTTCCAATTTCTTTGTACAGGTATTGCCCAGGCTGTAAAGAGCATCGCCAAGCTAGTAAGAAGTTAGACCTTTGGAGGCTACCGGAAATCCTTATAATACACCTGAAAAGATTTTCATACAGTCGATATACCAAAAACAAGCTAGAGACATGTGTGGACTTCCCGGTTCATGATCTTGACCTTTCAAAGTATATCGGTAGCAGGGGGCAACAGATTTCCAACCACTATCGACTGTATGCTATTAGTAATCACTATGGAAGCATGGGAGGTGGTCACTATACTGCATATGTTTATGTAAGTGTTCTTTCCCCCACCGATCATTTTCTGTTACTATTAATGCACGCTTGCTTGTGTGACTTGCATACATCGGTTTGTATGATTGAGGGACTGGTATACTCTTTATTTTGACTATATTTTGCATTTGAGGTTTGAGCCAGAGCCTCTTATGATTAATTACTCATATTTTTGGTGCAGCATGAAGGTAAGAAAGGGTGGTATGACTTTGATGACCGTCATGTGGGTCCTATAAGCGAGGAGAGTATAAAGACATCGGCAGCTTATGTTCTTTTTTATAGGCGGATACAGGGGGATGATAATAGGTTAGATGATACAGAAACAGGAATAGATTCTTCTGATTGTACAACATGAGTAGTGTCGGCGGCTTTCTTTCGAGTCCTTCCAGACATTGTATAGGGCGATTGGTCGGGGAGACAGTTTTGGTGCGCTGCTGCAAGGATCCAAAGCGGCTGATCCGAGAGTTTAAGGTAAGAAGTAAGATGGAGAGGAGCAGCAGCAGCAGCAGAAACCGTCGTTTTTGCTGCATCATGGGACAACAAGGGTGGGAAGAATTGAAGGGAGGGTGAAAACTGAAAAGGAACGGAGACAAGAAAGTAACAGATGGGAAGATGGATCTGCTTGTCATGGAATATGTGGGTACGAAGAAAAGGCGATGTGAAGAGGAGAAGCCGACAGACCAGAGAGAGCAGCTAAACTGTTGTAGTAGGTTTCGATATACCTGATACATGTGTTTCCTCAGCCCAAAGATTTTTTCTAGGGCTGAGAAAGGGAGATACAGAATTTGTCGTCGTTGTAGTTCCCTTGCTGCTGCTGCTAACTCGTTTCTTTCTTTTTCCTTTTTGTTTCTCCATTGACTTGTCTTGTAAAACTGGTCCTGATAAATTTTGGCTCGTGCTGCCGAAAAAGGTGGCCCTGGAAATTCCAATACAATTGAAACCGATCGATTTTGGTCT
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| CDS seq | ATGATTACTGAAGGAGTAGGGCATATTGATTCTGGCAAGAATGCGGGGAAAAAATCATTGTCTATCGAAGAAGGATCTGTAAACATTTACCCTATAATGCTCAGAGTTTCAGTCACGCGAGATACAAATGCACTAACCGTGAAGATCAGCAAAAAGGATAATTCTGCTGAGAACTTTAAACGGGCAAACAAGATTTTGACTTCAGACTCTGAGCCGGTTCATATATGGGATTTCTCTGGACGAACAACTTTTATATTGATGAACGAATGGAATCGAATGCCCCAAGACACTCGGTCTTCTGATCAGGAGATGCCTCTAGAAATACACTTCTATGATCTGTCAGAACCTACGGCAAATGGTACCAATGGGAAAAAAGATGAGTTAGCATTAACAATGAGTCGTTCAATGAGCAACGGCAGCATCATGGGCATGGATCTGGATTCAAGTGGAAGCTCTAAGCAAGTTGGCACTGGTTTAATAGGACTAGACAATCTTGGAAACACATGTTTCATGAACAGTGCAGTGCAGTGCTTAGCTCATACATCCAAGCTGGTTGACTACTTCCTTGGAGACTTCTATAAAGAAATAAACCATAATAACCCACTGGGGTTGAAGGCATCTTGCGTATTCATTTGGGGATTTGTTGAGGAAGCTATGGGCTCTGGACAGGACCCCTGTTGCGCCTCGCCAATTTAA
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| Protein seq | MITEGVGHIDSGKNAGKKSLSIEEGSVNIYPIMLRVSVTRDTNALTVKISKKDNSAENFKRANKILTSDSEPVHIWDFSGRTTFILMNEWNRMPQDTRSSDQEMPLEIHFYDLSEPTANGTNGKKDELALTMSRSMSNGSIMGMDLDSSGSSKQVGTGLIGLDNLGNTCFMNSAVQCLAHTSKLVDYFLGDFYKEINHNNPLGLKASCVFIWGFVEEAMGSGQDPCCASPI |
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| Function | Ubiquitin carboxyl-terminal hydrolase 8 [UniProtKB/Swiss-Prot:Q9C585] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0621000 | OsNip_12t0621000-00 | Chr12 | 26455060 | 26460984 | + | RAP2018-11-26 | ||
| CDS seq | ATGATTACTGAAGGAGTAGGGCATATTGATTCTGGCAAGAATGCGGGGAAAAAATCATTGTCTATCGAAGAAGGATCTGTAAACATTTACCCTATAATGCTCAGAGTTTCAGTCACGCGAGATACAAATGCACTAACCGTGAAGATCAGCAAAAAGGATAATTCTGCTGAGAACTTTAAACGGGCAAACAAGATTTTGACTTCAGACTCTGAGCCGGTTCATATATGGGATTTCTCTGGACGAACAACTTTTATATTGATGAACGAATGGAATCGAATGCCCCAAGACACTCGGTCTTCTGATCAGGAGATGCCTCTAGAAATACACTTCTATGATCTGTCAGAACCTACGGCAAATGGTACCAATGGGAAAAAAGATGAGTTAGCATTAACAATGAGTCGTTCAATGAGCAACGGCAGCATCATGGGCATGGATCTGGATTCAAGTGGAAGCTCTAAGCAAGTTGGCACTGGTTTAATAGGACTAGACAATCTTGGAAACACATGTTTCATGAACAGTGCAGTGCAGTGCTTAGCTCATACATCCAAGCTGGTTGACTACTTCCTTGGAGACTTCTATAAAGAAATAAACCATAATAACCCACTGGGGTTGAAGGCATCTTGCGTATTCATTTGGGGATTTGTTGAGGAAGCTATGGGCTCTGGACAGGACCCCTGTTGCGCCTCGCCAATTTAA
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| Protein seq | MITEGVGHIDSGKNAGKKSLSIEEGSVNIYPIMLRVSVTRDTNALTVKISKKDNSAENFKRANKILTSDSEPVHIWDFSGRTTFILMNEWNRMPQDTRSSDQEMPLEIHFYDLSEPTANGTNGKKDELALTMSRSMSNGSIMGMDLDSSGSSKQVGTGLIGLDNLGNTCFMNSAVQCLAHTSKLVDYFLGDFYKEINHNNPLGLKASCVFIWGFVEEAMGSGQDPCCASPI
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0621000 | OsNip_12t0621000-01 | Chr12 | 26455020 | 26461940 | + | IsoSeq | ||
| CDS seq | TTCAAAACCAAAATCAAATCAAAAAAGAAAAAAAAAGGTGAAATCCCTCACGCCTCGCGTCGCCGCGCCGCGCCGGGCCACCGCGACGGGGCGCAGATCCCACCGCCGCAATGCCCGCGACCCCCGACGACGACCCACCGGCGGCGGCGAGCGAAGCCCCGTCGACCTCCTCCGCGGCGGCGGATGAGGACGACCGCGTCTTCCTCGTCCTCCACAGGTGGTGGAGGGAGGCGCAGGAAGGGGGAGGGATCGAGGCGGCCGGGGTGCCGTACGCCGCGGCGCCGTCGGGCCCGACCTCCTACGGCATCG
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| Protein seq | FKTKIKSKKKKKGEIPHASRRRAAPGHRDGAQIPPPQCPRPPTTTHRRRRAKPRRPPPRRRMRTTASSSSSTGGGGRRRKGEGSRRPGCRTPRRRRARPPTAS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr12 | 26455586 | 26456690 | + | OsNip_12t0621000-00 | OsNip_12t0621000-00,OsNip_12t0621000-01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.297014 | 0.541030 | 3.742730 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g42600 | RBH | 0.753221 | 0.224479 | 0.736609 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0621000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0021220 | RBH | 0.383288 | 9.151832 | 3.776976 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0021300 | RBH | 0.205411 | 4.324055 | 2.382106 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0021660 | RBH | 0.312104 | 5.983986 | 9.036878 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0020970 | RBH | 0.137134 | 0.263090 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0020620 | RBH | 5.455890 | 11.708888 | 14.837638 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0354500 | RBH | 3.9209595 | 6.374427 | 7.18239 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0385500 | RBH | 4.457951 | 6.134329 | 13.065186 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0020750 | RBH | 0.177900 | 0.357397 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0020970 | RBH | 0.296418 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0020890 | RBH | 1.218498 | 13.801731 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0020970 | RBH | 0.762163 | 0.0 | 1.667933 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0021170 | RBH | 0.116914 | 6.695179 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G020640 | RBH | 0.541813 | 3.735543 | 2.728655 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0020420 | RBH | 0.382348 | 15.772947 | 7.788149 |
