Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_12g0608700 | OGI:12064520 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr12:25712030-25712683 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCAGGCACTTCTGGCACTCGCTCCCGCTAGGTCCCTCGTGCACTGCGCCAGCCCGTACAACCGCGACGTGCCGAGCTTCGAGTCGACGTACGGCATGCTGTCGTTGAACAGTCTCAGCTTGTTGTCACCGGCCCTGTCCGCGAGTTTGTTCATCAGCTCCCGCCTCGTGTCGTTCATGGCCGTCATGTTCTCGACGTAAAGCCCGTTGAACGTGTAGGTGGAGCGATTGACTTCGACCTTGCCGTAGGTGAGCTCGGAGAAAAAGGACGCATCGGAGTAGCGGAGGAGGCAGGCGTCGTAGTTGGCCTTGACCGTCCGGCTTCCGGGGCACACCTGCTTGATCCCGGCGGGCGCTCCGGCGAGGCATTTCTTGCACTCCGTCGCGTTGTAGTCGGCGTGGCACATGATAAGGCCGAATACCTGGTAGGCAGTACCCGTCCCGACCGAGCTGGTGTTAAACCAACCATCGTCGGTGGCGGCCGTGGCGAGCGTGGAGAGGAGCTGGTCGAGGTTCTTCTCGAACTGGTTGCCCACGGTGTAGTTGCCGGTGGTCGAGCAGTCTGGCCAGAGCGGCTCTTCGTAGTTGCTCCGAGCAACTGCCGCCGAGGCAACCACGGCGAGGAGGAAGAGGATGATGACAAGGCGAGGAGCCAT
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| CDS seq | ATGGCTCCTCGCCTTGTCATCATCCTCTTCCTCCTCGCCGTGGTTGCCTCGGCGGCAGTTGCTCGGAGCAACTACGAAGAGCCGCTCTGGCCAGACTGCTCGACCACCGGCAACTACACCGTGGGCAACCAGTTCGAGAAGAACCTCGACCAGCTCCTCTCCACGCTCGCCACGGCCGCCACCGACGATGGTTGGTTTAACACCAGCTCGGTCGGGACGGGTACTGCCTACCAGGTATTCGGCCTTATCATGTGCCACGCCGACTACAACGCGACGGAGTGCAAGAAATGCCTCGCCGGAGCGCCCGCCGGGATCAAGCAGGTGTGCCCCGGAAGCCGGACGGTCAAGGCCAACTACGACGCCTGCCTCCTCCGCTACTCCGATGCGTCCTTTTTCTCCGAGCTCACCTACGGCAAGGTCGAAGTCAATCGCTCCACCTACACGTTCAACGGGCTTTACGTCGAGAACATGACGGCCATGAACGACACGAGGCGGGAGCTGATGAACAAACTCGCGGACAGGGCCGGTGACAACAAGCTGAGACTGTTCAACGACAGCATGCCGTACGTCGACTCGAAGCTCGGCACGTCGCGGTTGTACGGGCTGGCGCAGTGCACGAGGGACCTAGCGGGAGCGAGTGCCAGAAGTGCCTGA
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| Protein seq | MAPRLVIILFLLAVVASAAVARSNYEEPLWPDCSTTGNYTVGNQFEKNLDQLLSTLATAATDDGWFNTSSVGTGTAYQVFGLIMCHADYNATECKKCLAGAPAGIKQVCPGSRTVKANYDACLLRYSDASFFSELTYGKVEVNRSTYTFNGLYVENMTAMNDTRRELMNKLADRAGDNKLRLFNDSMPYVDSKLGTSRLYGLAQCTRDLAGASARSA |
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| Function | Cysteine-rich repeat secretory protein 38 [UniProtKB/Swiss-Prot:Q9LRJ9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0608700 | OsNip_12t0608700-00 | Chr12 | 25712030 | 25712683 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCTCCTCGCCTTGTCATCATCCTCTTCCTCCTCGCCGTGGTTGCCTCGGCGGCAGTTGCTCGGAGCAACTACGAAGAGCCGCTCTGGCCAGACTGCTCGACCACCGGCAACTACACCGTGGGCAACCAGTTCGAGAAGAACCTCGACCAGCTCCTCTCCACGCTCGCCACGGCCGCCACCGACGATGGTTGGTTTAACACCAGCTCGGTCGGGACGGGTACTGCCTACCAGGTATTCGGCCTTATCATGTGCCACGCCGACTACAACGCGACGGAGTGCAAGAAATGCCTCGCCGGAGCGCCCGCCGGGATCAAGCAGGTGTGCCCCGGAAGCCGGACGGTCAAGGCCAACTACGACGCCTGCCTCCTCCGCTACTCCGATGCGTCCTTTTTCTCCGAGCTCACCTACGGCAAGGTCGAAGTCAATCGCTCCACCTACACGTTCAACGGGCTTTACGTCGAGAACATGACGGCCATGAACGACACGAGGCGGGAGCTGATGAACAAACTCGCGGACAGGGCCGGTGACAACAAGCTGAGACTGTTCAACGACAGCATGCCGTACGTCGACTCGAAGCTCGGCACGTCGCGGTTGTACGGGCTGGCGCAGTGCACGAGGGACCTAGCGGGAGCGAGTGCCAGAAGTGCCTGA
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| Protein seq | MAPRLVIILFLLAVVASAAVARSNYEEPLWPDCSTTGNYTVGNQFEKNLDQLLSTLATAATDDGWFNTSSVGTGTAYQVFGLIMCHADYNATECKKCLAGAPAGIKQVCPGSRTVKANYDACLLRYSDASFFSELTYGKVEVNRSTYTFNGLYVENMTAMNDTRRELMNKLADRAGDNKLRLFNDSMPYVDSKLGTSRLYGLAQCTRDLAGASARSA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0608500 | SBH | 0.215580 | 0.226346 | 0.508085 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g41510 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0608700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0020300 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0020400 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0020740 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0020060 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0019640 | RBH | 0.0 | 0.0 | 0.613934 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0344700 | RBH | 0.0013215 | 3.161442 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0019550 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0375500 | SBH | 0.003927 | 3.798122 | 0.055113 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0019790 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0020020 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0019970 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0020010 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0020170 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G019720 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0019500 | SBH | 0.0 | 0.802482 | 0.158285 |
