Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_12g0589400 | OGI:12063660 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr12:24646431-24649269 | ||||||||
| Gene Symbol | HSA1A, hsa1(t), s(t), hst49 | ||||||||||
| DNA seq | ATCGTGCCGCCGTCCCCTGGGTGGAGGCCGGCAAAACCCTAGATCATCTCACGGTGGCGACATGGAAGCGCATGGATGGATGGTCCTGGACCGCATTGTCCGCTGCTGGAGCGACGACGACGACGTCGTCGGCGGCGACGATGACCCCACGTCGTCGGAGGTCGCCTACACCTGCAGCGGGCACCCCATCCGCGTCTCCCTCCGCGTCGCCGACCCCCCCGCCGTCTCCCGCCTCTACGTCCACCGCCCCGGCTGGCCGCGCGTCTACGACCTGGGCGACGCCGAGGCCATCGCCGCCCACCGCGGATCCATCCTCCTCTCGGCGCGCGTCCCCTTCGCCGACCTCGGCACCGTCGCGCCGGGCCAATTCCCCGTCGACTACTACGTCTACACCGCCGGCGAGGGGCTGCGGCGGCCATCGCTCACGCGGCTGCCCCCTTGCTTCATCGGTGGATTCTCCTCCCCGGAGGTCGACCGCCACTTCAAGCCGCACCGGTGCCAGCAGCAGCGGGTCATGGTAGAGCAGAACGTCGGCTTCTTCTGCCACGGCGCCGGCAATTTCACGGTGGCGGACATCAACATCCATAAGGGTAAGGCCGTCGAGCTCTGCGTCCTCAACCACTATGCTGATTGCCCCCAACAACCCCAATGGAAGGTCCAGATCCTGGAGATGCAGCAGCAACCCAACCAAAACCACCACCTCAGAGGTTGGTGGACCGACGCCGTTCTTCCCCTGCACGACAGCTACCTCGCCTGCGTCGACTGCTACCATGGCATCATCCTCATCGACGTCAAGACCCAGCGTTACTTCAACTACATACCGCTGCCGGCAGAGGCGAAGCATGGCCGCCGCCGCGTTGACAAGTACAGCCCTGATCCAGCTCGTTCTGCCTCCATCAACAGCGCTGGCAATATCACGGTTGTCTGCATAGCCGACGACAATGCCGCAGCAGGAGGCCGCAACAACAACAGCACTGCTGGCTCTGCTTTCATCGAGATCGAGTCATGGTGTCTGGTCGACATCCACGAAAGTAGATGGATTCTTGATTTCACTATGGAAGCCGGCAAGTTCTGGGATATTTGCTCTGCTGCAAACCAGCCCCTCCTTCCACATGCGCCGCCTACTTTCCCCCTGGTGAGCATGGCTAATCCATTTGCCATCTCCTTCCTCCTCTACGACAAGGCCAACAACTTCCTCCTCGAGGACAAGGGCAATGGCCTTTACTGGATGATTGAGGTAGACATGAGAAACCAAATCCTGCTGTCACCAGCCACCCTCTACATCAGTGAAGAAGAAGAAGAGCTCTTCATCAATGGAAAAGAAGAAGAGCAAGAAAGATGTTGTGATGAGAGATACCCGCCCATGAAATATTTTTATGGCCATAACTTCATCCCCAGCTGGTTCCCCTCTTACTTGAAGAAAGGTGGCGACACCACAAGGTTTGCTATGTTTTCTTTTTTATTTGTGATACAAAAACATTTACCATTTGTGTGATGTGTTCAAATATGAAAATAATACCAGTTGGAATATCCATTCAATTGCTTTAGCCACTGTTTAGGAATTAACAAGCAGATAACTGGATAGTTAAATGGCTGAGCAGTTAGCATATTGGAATAGAGCATATCTTTATTAGCTAAATGACTTTGACGATTGGTTTGCTATGTTGTAACATGAGCATATTTGATCGAATGCCCTGCCAATCCTGCAAATAGTGATTCAAGCAATAACTCGGAATTATTCTTCTGTACTCCTCTTCTATACTTGGACATTGCCTCTTAATTAAATTTTCATTACATTCATTTTTCTTTTCGCACAGTTAAACTAGTAGAGCCTTTCATTTGGTGAAAGTTTTACTGATTTGCCAGCACATAACCTTAAGTAATTTGGTTAGCTAAGTTCTTGGTCTAATCAATTACCAACTGTAAACATCATAGCTTGATTTGAAGGAACATCGGGATTGCAGGATCAAAAACTACAGCCTAAACTGTTACTGTTTCTTCTGCTGGAAAGCAAATATAATATTAGGCCTTAAGACAGACAGCCACAGAACAGTGCAGACTTTCTTAACTAGTGTGTCGCATTTGCTTATTTTCTTACCGTCTGTATCTAGTTGCATTGATCGCCTTGTGACTTCTTTTCCATTTCTTGATGCAGTCGGCTGCGGAGTTTAATGATGCAGCAGGCAAAACAAGAGAGTGTAATGCAAAAGATTGGACGGTAATTAAGCACAATGAACAAGCTGTGTCCATGTTTTTTTATCTAGCCTGGAATTAGTTGCATTGCCAGGGTTTTCGGTTTCTTTCGGCCATTTTGGTTTTACCAAAATTCCTGAAATTTCGGTTTTCTGCACTTTTTGGACCCCATTTTTTGAAATTTTAACATAATTTAGCTGATTTTGACCAAATTCGTAAAAAAAAAGAGAGACCGAAAATTTCGACCAGATAATCACTTGCCGAGGGATCCGAAATTTCGAACCGAAATTACAATCAGTGTATATAGCTGTTGTCTGCCCATGCCAACTCCCGCAACATCGGAAGGCGTGACGAGGTGATCATGGCGTAGCTGAACAATCCAGCAAACCTTCGCACCCAACGCCTACTACCACGACAAGACAGACAGAGCGGTCGTCTCCCAGAGAACTTTTATTTTAGTTTTGGGTTTGATTATACAATCGGGTTTTAACCGTATGTAGGTTATGTTCTTGATGGTGGTTTAAGATGTTTAACACTATAGGATGGGTTATAGTTCGATGTTAGAATTATTCCCGTACCTGGACTACTATTGTTTGATGTTGAATTTACAAGTTCAATATGATGTTTTGCACAACTCATTTTAGTT
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| CDS seq | ATGGAAGCGCATGGATGGATGGTCCTGGACCGCATTGTCCGCTGCTGGAGCGACGACGACGACGTCGTCGGCGGCGACGATGACCCCACGTCGTCGGAGGTCGCCTACACCTGCAGCGGGCACCCCATCCGCGTCTCCCTCCGCGTCGCCGACCCCCCCGCCGTCTCCCGCCTCTACGTCCACCGCCCCGGCTGGCCGCGCGTCTACGACCTGGGCGACGCCGAGGCCATCGCCGCCCACCGCGGATCCATCCTCCTCTCGGCGCGCGTCCCCTTCGCCGACCTCGGCACCGTCGCGCCGGGCCAATTCCCCGTCGACTACTACGTCTACACCGCCGGCGAGGGGCTGCGGCGGCCATCGCTCACGCGGCTGCCCCCTTGCTTCATCGGTGGATTCTCCTCCCCGGAGGTCGACCGCCACTTCAAGCCGCACCGGTGCCAGCAGCAGCGGGTCATGGTAGAGCAGAACGTCGGCTTCTTCTGCCACGGCGCCGGCAATTTCACGGTGGCGGACATCAACATCCATAAGGGTAAGGCCGTCGAGCTCTGCGTCCTCAACCACTATGCTGATTGCCCCCAACAACCCCAATGGAAGGTCCAGATCCTGGAGATGCAGCAGCAACCCAACCAAAACCACCACCTCAGAGGTTGGTGGACCGACGCCGTTCTTCCCCTGCACGACAGCTACCTCGCCTGCGTCGACTGCTACCATGGCATCATCCTCATCGACGTCAAGACCCAGCGTTACTTCAACTACATACCGCTGCCGGCAGAGGCGAAGCATGGCCGCCGCCGCGTTGACAAGTACAGCCCTGATCCAGCTCGTTCTGCCTCCATCAACAGCGCTGGCAATATCACGGTTGTCTGCATAGCCGACGACAATGCCGCAGCAGGAGGCCGCAACAACAACAGCACTGCTGGCTCTGCTTTCATCGAGATCGAGTCATGGTGTCTGGTCGACATCCACGAAAGTAGATGGATTCTTGATTTCACTATGGAAGCCGGCAAGTTCTGGGATATTTGCTCTGCTGCAAACCAGCCCCTCCTTCCACATGCGCCGCCTACTTTCCCCCTGGTGAGCATGGCTAATCCATTTGCCATCTCCTTCCTCCTCTACGACAAGGCCAACAACTTCCTCCTCGAGGACAAGGGCAATGGCCTTTACTGGATGATTGAGGTAGACATGAGAAACCAAATCCTGCTGTCACCAGCCACCCTCTACATCAGTGAAGAAGAAGAAGAGCTCTTCATCAATGGAAAAGAAGAAGAGCAAGAAAGATGTTGTGATGAGAGATACCCGCCCATGAAATATTTTTATGGCCATAACTTCATCCCCAGCTGGTTCCCCTCTTACTTGAAGAAAGGTGGCGACACCACAAGGTTTGCTATGTTTTCTTTTTTATTTGTGATACAAAAACATTTACCATTTGTGTGA
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| Protein seq | MEAHGWMVLDRIVRCWSDDDDVVGGDDDPTSSEVAYTCSGHPIRVSLRVADPPAVSRLYVHRPGWPRVYDLGDAEAIAAHRGSILLSARVPFADLGTVAPGQFPVDYYVYTAGEGLRRPSLTRLPPCFIGGFSSPEVDRHFKPHRCQQQRVMVEQNVGFFCHGAGNFTVADINIHKGKAVELCVLNHYADCPQQPQWKVQILEMQQQPNQNHHLRGWWTDAVLPLHDSYLACVDCYHGIILIDVKTQRYFNYIPLPAEAKHGRRRVDKYSPDPARSASINSAGNITVVCIADDNAAAGGRNNNSTAGSAFIEIESWCLVDIHESRWILDFTMEAGKFWDICSAANQPLLPHAPPTFPLVSMANPFAISFLLYDKANNFLLEDKGNGLYWMIEVDMRNQILLSPATLYISEEEEELFINGKEEEQERCCDERYPPMKYFYGHNFIPSWFPSYLKKGGDTTRFAMFSFLFVIQKHLPFV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0589400 | OsNip_12t0589400-01 | Chr12 | 24646431 | 24649269 | + | RAP2018-11-26 | ||
| CDS seq | ATGGAAGCGCATGGATGGATGGTCCTGGACCGCATTGTCCGCTGCTGGAGCGACGACGACGACGTCGTCGGCGGCGACGATGACCCCACGTCGTCGGAGGTCGCCTACACCTGCAGCGGGCACCCCATCCGCGTCTCCCTCCGCGTCGCCGACCCCCCCGCCGTCTCCCGCCTCTACGTCCACCGCCCCGGCTGGCCGCGCGTCTACGACCTGGGCGACGCCGAGGCCATCGCCGCCCACCGCGGATCCATCCTCCTCTCGGCGCGCGTCCCCTTCGCCGACCTCGGCACCGTCGCGCCGGGCCAATTCCCCGTCGACTACTACGTCTACACCGCCGGCGAGGGGCTGCGGCGGCCATCGCTCACGCGGCTGCCCCCTTGCTTCATCGGTGGATTCTCCTCCCCGGAGGTCGACCGCCACTTCAAGCCGCACCGGTGCCAGCAGCAGCGGGTCATGGTAGAGCAGAACGTCGGCTTCTTCTGCCACGGCGCCGGCAATTTCACGGTGGCGGACATCAACATCCATAAGGGTAAGGCCGTCGAGCTCTGCGTCCTCAACCACTATGCTGATTGCCCCCAACAACCCCAATGGAAGGTCCAGATCCTGGAGATGCAGCAGCAACCCAACCAAAACCACCACCTCAGAGGTTGGTGGACCGACGCCGTTCTTCCCCTGCACGACAGCTACCTCGCCTGCGTCGACTGCTACCATGGCATCATCCTCATCGACGTCAAGACCCAGCGTTACTTCAACTACATACCGCTGCCGGCAGAGGCGAAGCATGGCCGCCGCCGCGTTGACAAGTACAGCCCTGATCCAGCTCGTTCTGCCTCCATCAACAGCGCTGGCAATATCACGGTTGTCTGCATAGCCGACGACAATGCCGCAGCAGGAGGCCGCAACAACAACAGCACTGCTGGCTCTGCTTTCATCGAGATCGAGTCATGGTGTCTGGTCGACATCCACGAAAGTAGATGGATTCTTGATTTCACTATGGAAGCCGGCAAGTTCTGGGATATTTGCTCTGCTGCAAACCAGCCCCTCCTTCCACATGCGCCGCCTACTTTCCCCCTGGTGAGCATGGCTAATCCATTTGCCATCTCCTTCCTCCTCTACGACAAGGCCAACAACTTCCTCCTCGAGGACAAGGGCAATGGCCTTTACTGGATGATTGAGGTAGACATGAGAAACCAAATCCTGCTGTCACCAGCCACCCTCTACATCAGTGAAGAAGAAGAAGAGCTCTTCATCAATGGAAAAGAAGAAGAGCAAGAAAGATGTTGTGATGAGAGATACCCGCCCATGAAATATTTTTATGGCCATAACTTCATCCCCAGCTGGTTCCCCTCTTACTTGAAGAAAGGTGGCGACACCACAAGGTTTGCTATGTTTTCTTTTTTATTTGTGATACAAAAACATTTACCATTTGTGTGA
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| Protein seq | MEAHGWMVLDRIVRCWSDDDDVVGGDDDPTSSEVAYTCSGHPIRVSLRVADPPAVSRLYVHRPGWPRVYDLGDAEAIAAHRGSILLSARVPFADLGTVAPGQFPVDYYVYTAGEGLRRPSLTRLPPCFIGGFSSPEVDRHFKPHRCQQQRVMVEQNVGFFCHGAGNFTVADINIHKGKAVELCVLNHYADCPQQPQWKVQILEMQQQPNQNHHLRGWWTDAVLPLHDSYLACVDCYHGIILIDVKTQRYFNYIPLPAEAKHGRRRVDKYSPDPARSASINSAGNITVVCIADDNAAAGGRNNNSTAGSAFIEIESWCLVDIHESRWILDFTMEAGKFWDICSAANQPLLPHAPPTFPLVSMANPFAISFLLYDKANNFLLEDKGNGLYWMIEVDMRNQILLSPATLYISEEEEELFINGKEEEQERCCDERYPPMKYFYGHNFIPSWFPSYLKKGGDTTRFAMFSFLFVIQKHLPFV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0590400 | RBH | 0.872714 | 1.901182 | 3.056492 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g39880 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0589400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0019110 | RBH | 0.000000 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0019220 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0019570 | RBH | 0.000000 | 0.000000 | 0.349577 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0018890 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0018480 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0327700 | RBH | 0 | 0.01668 | 0.025055 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0018390 | SBH | 1.498164 | 3.473628 | 10.410601 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0357500 | RBH | 0.0264355 | 0 | 0.0271345 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0018580 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0018860 | SBH | 2.317804 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0018780 | SBH | 42.168930 | 67.187645 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0018810 | SBH | 2.438289 | 0.0 | 9.924429 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0018950 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G018600 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0018300 | RBH | 0.0 | 0.0 | 0.000000 |
