Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_12g0578000 | OGI:12062230 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr12:23912222-23914774 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTTCTCAATGCATGAAGATATCTGCATTGAAATTTGATAGAACAATATATACTTCTTCATTCATACGTTCGTTTAGAAAAGGATGATACATGTAAAATATGAAGTCAAGAACTGTAAAACCTCCAAAATATACTATTCTTATGCGCTAACATTGTACTGTTGCAGTGGAAAGAGAAAAATGCTGCTCTGTTGAATCTTGAGTTCCTGTCTTCTGCTTTTTCAGAAGGCCCTAACCATAAACCTTTGTTTCGGTTTTGTCTAACCAGATGAAGTGAAGGCCCTAACCATGAACTATCCGACCATTGTCAGTGTTTTGTCAGTCACCCCCATCATCATCTGTCGTCATGGTAACAGTCATTAACAGAGCAAACCTGATGGCAGATGCGCAGAAGCTGATGAATGCCTCAAGCTTTCAACACATCCAAGGCTGTTCACTCAATCAAAGAAGCTTCTGTACCATGTCCTACCACCTTCTTGATTGCAGGCAGTACAAGGAATGGTGCTTCCTTTCTTCAGATCACATGATCTGCAAGGTTAATGACCAGGCAGAGGTTCCCAAATTTGCAATAGCCTATAAGCATGCATTGCCCTAATAAACGACTCACTGCACAAGCAGCTCATGGCCTGCTGGAACACAGCCAACATGCTTAACATGCGAGCTCAATCTGTCAACCATCTCAGATATCTGGTCTGAATCTTGGTGCTTTCTATCCCCCACGGTGAACTCATGGAACGTCTCATTGAGTTCGACCCAGCTTGATCCTGCTGTTTTCTGCGACCCAGTTCCTTTCATCTGCATCCTTGCCTTTGCCATGTCACTCCACTGCCCAGCCTCAGCATAGATGTTCGAGAGGACAGCATAGTTCCCTGCATTCGACGGCTGCAGCTTGCTCAACTCGTTCACTGCTATTTCTGCATACTCCACATTCTTATGCAGTCGGCATGCACTGAGAAGGGATCCCCATATAACCTCATTAGGCTCCCAAGGCATGCTTTTGATGAGGTCGACAGCTTCCTTGATGAGCCCTCCACGGCCAAGAAGGTCGATCATACAACCGTAATGCTCTATCTGAGGCATGATGCCATAATCCCTCTCCATGTTGGAGAAATGCCGGCGGCCCTCATCCACAAACCCCATGTGTGTGCATGCACTAAGAACATTGATCATTGTCACAGCATCAGGGTTAAATCCCTGTTGCTTCATTTGAGCAAAGAGCTCCAGTGCCTTGTCTCCATGCCCATGCATTGCAAAACCTCCAATGATGCTGTTCCATGACACCGAATCCTTCTGAACAGTCTCAGTGTCAAAGACATAATCCGCTCGGTTCACACACCCACATTTGCAAAACATGTCAATCAGTGCATTGCACACATGGGTTGATCTCCCTAGATTCCTCTTTCGCACGTATCGGTGAATCCTCTTTCCAAGTGAAAGAGAGCCTGACTCTGCACACGCAGCCAGGATACTCACAACCGCGGCAACATCAAGTTCCACGGAAGCCTCCTTCATCTGAGCAAACAACTTACCTGCCTCATCAACAAGCCCTTTCTGTGCACATGCCGAGACCATTATAGTCCATGTCACCAAGTTCTTGCTAGGCATCTTGTCAAAGATCACCCGAGCCATCTCCAGGTCACCCTTCTTGCAGTAACCAGAAACCATCGTCGACCACGACACGACATTCCTCTCCGGCATGCGCTGAAACAGCTCGAAAGCCGCCTCCACCTCCCCTGCCTTTGTGTAGCCATCCAGGATCGTGTTCCAGCTCACCGTGTCCTTCTCTGGCATCTCGTCAAACAACTTCCTCACGCCAGCCAGCTCCCCCTCCCGCACCATCGCCGCCATAGCCGTGTTCCAGGACACGACATCCCGCTCCGGCATTTCGTCGAACACCTTCCGGGCGTCCGAGAACCCGCCGTTCTTGGAGTAGGCGTCGATAAGCGCGTTCCCGACGAAGGTGTCCTCGACGGACCCGAGCTTGACGACGTGCGAGTGCACCGCGCGGACCGGGGCGACGCCCGCGGCGGAGAGCGCCTTGATGAGGAAGGAGTAGGTGAAGCTGTCCCTGCGCGGCATGGCGGAGAACGCGGCGAGCGCGTCGCGCGGCGCGCCCCCCCAGCGCGTAGGCGCGGAGCATGGTGTTGGCGAGGAAGGCGTCGGCGTGCGGGTCCCGGATCGCGTCGAAGACGCGGCGGGAGGACGGGAGGAGGCGGAGGAGCGCGTAGGCGGACACCAGCCTCGCCGCGGCGCGCGGGTTGAGGTGGAGGCCCTGCTTGAGCACCTGCGCGTGGAGCTCCCGCACGTGGGCGGCCCGCGGGAGGCCGCGCGGCAGCGACGCCAGGTGCTGCTCCACCAGCCGCCTCTGCGACGGCGCCCCCCACGTCGGCGGCGGCCGGACCGCCGATGCCGACGACGACGCGGCCGTGGACATGGACATGGACCACTTCACGAATCCTCTTCGGCGGCGGCGGCGGCGGTCGCCGGAGAAGAGGCGTGGCGAGAGAGGCGTGGCCGGTGAGGAAGGGGAAGCTGGAGAAGGGGCTAAGGTTGTT
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| CDS seq | ACAACCTTAGCCCCTTCTCCAGCTTCCCCTTCCTCACCGGCCACGCCTCTCTCGCCACGCCTCTTCTCCGGCGACCGCCGCCGCCGCCGCCGAAGAGGATTCGTGAAGTGGTCCATGTCCATGTCCACGGCCGCGTCGTCGTCGGCATCGGCGGTCCGGCCGCCGCCGACGTGGGGGGCGCCGTCGCAGAGGCGGCTGGTGGAGCAGCACCTGGCGTCGCTGCCGCGCGGCCTCCCGCGGGCCGCCCACGTGCGGGAGCTCCACGCGCAGGTGCTCAAGCAGGGCCTCCACCTCAACCCGCGCGCCGCGGCGAGGCTGGTGTCCGCCTACGCGCTCCTCCGCCTCCTCCCGTCCTCCCGCCGCGTCTTCGACGCGATCCGGGACCCGCACGCCGACGCCTTCCTCGCCAACACCATGCTCCGCGCCTACGCGCTGGGGGGGCGCGCCGCGCGACGCGCTCGCCGCGTTCTCCGCCATGCCGCGCAGGGACAGCTTCACCTACTCCTTCCTCATCAAGGCGCTCTCCGCCGCGGGCGTCGCCCCGGTCCGCGCGGTGCACTCGCACGTCGTCAAGCTCGGGTCCGTCGAGGACACCTTCGTCGGGAACGCGCTTATCGACGCCTACTCCAAGAACGGCGGGTTCTCGGACGCCCGGAAGGTGTTCGACGAAATGCCGGAGCGGGATGTCGTGTCCTGGAACACGGCTATGGCGGCGATGGTGCGGGAGGGGGAGCTGGCTGGCGTGAGGAAGTTGTTTGA
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| Protein seq | TTLAPSPASPSSPATPLSPRLFSGDRRRRRRRGFVKWSMSMSTAASSSASAVRPPPTWGAPSQRRLVEQHLASLPRGLPRAAHVRELHAQVLKQGLHLNPRAAARLVSAYALLRLLPSSRRVFDAIRDPHADAFLANTMLRAYALGGRAARRARRVLRHAAQGQLHLLLPHQGALRRGRRPGPRGALARRQARVRRGHLRRERAYRRLLQERRVLGRPEGVRRNAGAGCRVLEHGYGGDGAGGGAGWREEVV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0578000 | OsNip_12t0578000-01 | Chr12 | 23912222 | 23914774 | - | RAP2018-11-26 | ||
| CDS seq | ACAACCTTAGCCCCTTCTCCAGCTTCCCCTTCCTCACCGGCCACGCCTCTCTCGCCACGCCTCTTCTCCGGCGACCGCCGCCGCCGCCGCCGAAGAGGATTCGTGAAGTGGTCCATGTCCATGTCCACGGCCGCGTCGTCGTCGGCATCGGCGGTCCGGCCGCCGCCGACGTGGGGGGCGCCGTCGCAGAGGCGGCTGGTGGAGCAGCACCTGGCGTCGCTGCCGCGCGGCCTCCCGCGGGCCGCCCACGTGCGGGAGCTCCACGCGCAGGTGCTCAAGCAGGGCCTCCACCTCAACCCGCGCGCCGCGGCGAGGCTGGTGTCCGCCTACGCGCTCCTCCGCCTCCTCCCGTCCTCCCGCCGCGTCTTCGACGCGATCCGGGACCCGCACGCCGACGCCTTCCTCGCCAACACCATGCTCCGCGCCTACGCGCTGGGGGGGCGCGCCGCGCGACGCGCTCGCCGCGTTCTCCGCCATGCCGCGCAGGGACAGCTTCACCTACTCCTTCCTCATCAAGGCGCTCTCCGCCGCGGGCGTCGCCCCGGTCCGCGCGGTGCACTCGCACGTCGTCAAGCTCGGGTCCGTCGAGGACACCTTCGTCGGGAACGCGCTTATCGACGCCTACTCCAAGAACGGCGGGTTCTCGGACGCCCGGAAGGTGTTCGACGAAATGCCGGAGCGGGATGTCGTGTCCTGGAACACGGCTATGGCGGCGATGGTGCGGGAGGGGGAGCTGGCTGGCGTGAGGAAGTTGTTTGA
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| Protein seq | TTLAPSPASPSSPATPLSPRLFSGDRRRRRRRGFVKWSMSMSTAASSSASAVRPPPTWGAPSQRRLVEQHLASLPRGLPRAAHVRELHAQVLKQGLHLNPRAAARLVSAYALLRLLPSSRRVFDAIRDPHADAFLANTMLRAYALGGRAARRARRVLRHAAQGQLHLLLPHQGALRRGRRPGPRGALARRQARVRRGHLRRERAYRRLLQERRVLGRPEGVRRNAGAGCRVLEHGYGGDGAGGGAGWREEVV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.354971 | 1.573684 | 2.337316 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0578000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0018450 | RBH | 0.212829 | 0.983190 | 1.544528 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0018560 | RBH | 0.072198 | 0.797845 | 0.358212 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0018890 | RBH | 0.799448 | 0.0 | 2.266652 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0018240 | RBH | 0.0 | 0.088402 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0017800 | RBH | 2.744242 | 5.175116 | 3.153625 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0318000 | RBH | 2.959099 | 2.9242965 | 2.498934 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0017740 | RBH | 0.289231 | 0.059785 | 0.175814 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0348000 | RBH | 3.458168 | 4.3909185 | 5.448999 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0017900 | RBH | 0.154581 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0018160 | RBH | 0.307532 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0018090 | RBH | 4.410209 | 2.271770 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0018110 | RBH | 0.342335 | 0.0 | 0.516948 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0018280 | RBH | 0.221034 | 1.039092 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G018030 | RBH | 0.293712 | 0.081657 | 0.480732 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0017710 | RBH | 1.422137 | 2.962196 | 1.176343 |
