Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_12g0567800 | OGI:12060760 | 3/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr12:23352196-23353175 | ||||||||
| Gene Symbol | MT1F, OsMT1f, OsMT1c, MT1f, MT1c, MT1Lb, OsMT1Lb | ||||||||||
| DNA seq | GAGATTCAGAGATAAGCGATGTTACTTTGTTTTTACCAACATTTACATACAAGCGGTACAACACATATTGCCAGAAACCACTTGGTTTTCCAGCCATAATTTTTGACAATTCATGACGCGCGCGCGCACACACAATGCTGGATTCACAGGGTCACACAGCCATGAGCCATCAGACTGGAAGGGCTCTGTTTGTTCATCACATAGTCACAGATCGCCTTGGCCTTTAGCAGTTGCAGGGGTTGCACTTGCAGCTGGAACCACAGCTGCAGCCATGGGCACCCTCACCAGATTCAGCTGCTTTGCCAACTCCCTCAAATTGCCTGCAAAGAAATAAATCAAATTCAGGAGCGAACAGTTTCAGGCATGGAAAGATAACATCTTCAGCTTTTCTTCAGCATATGGTCACATGTCTGAATCTCAGACAGGAGTTCCCTTCAGTTTAGTTTTTTTATCAAGGAAAAGATTCATAGATATCAATATATCATACCCCTTCTCAGGTGCAACACCGAGGACAGTGGTTGTAGTAGTAGTGGTGATGGTGATCTTCTCAGCCAGGTCAGGGTACATCTTTCTGAACCAAGAAACAAAAAGTAGAACATGAGATGATTCGGTAACCAGAAATGAAAAATCTCTTCTCATCTTGTGGGTAGCTTCATCTGAATATTACTCCAAACCAATGGGAGGAGGCAACACAGGAGATGGAAGAGTATATGCTTTTATCATGGAAAATACATCAAAATCACCTGAACTAATTGGGTGTATCTCTGAATTCTGAAAGCTTATGCCAGTTTAGCTTGATAAATACATAGCAAAACATATTCAGAATCAGTAGCTGAAGATTGAACGTACCCGCAGCCACCGCTGCATCCGCAGGAACCACAGTTGCAACTTCCACCGCACGACATCTTGATCTTCTGGGTCACTTGTAAACTCTTCAGGAACTTGTATAGTTGGATGAAATGAGAGATTGAAAGCTCGAT
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| CDS seq | ATGTCGTGCGGTGGAAGTTGCAACTGTGGTTCCTGCGGATGCAGCGGTGGCTGCGGAAAGATGTACCCTGACCTGGCTGAGAAGATCACCATCACCACTACTACTACAACCACTGTCCTCGGTGTTGCACCTGAGAAGGGGCAATTTGAGGGAGTTGGCAAAGCAGCTGAATCTGGTGAGGGTGCCCATGGCTGCAGCTGTGGTTCCAGCTGCAAGTGCAACCCCTGCAACTGCTAA |
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| Protein seq | MSCGGSCNCGSCGCSGGCGKMYPDLAEKITITTTTTTTVLGVAPEKGQFEGVGKAAESGEGAHGCSCGSSCKCNPCNC |
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| Function | Metallothionein-like protein 4A [UniProtKB/Swiss-Prot:Q0IMG5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0567800 | OsNip_12t0567800-01 | Chr12 | 23352196 | 23353175 | - | RAP2018-11-26 | ||
| CDS seq | ATGTCGTGCGGTGGAAGTTGCAACTGTGGTTCCTGCGGATGCAGCGGTGGCTGCGGAAAGATGTACCCTGACCTGGCTGAGAAGATCACCATCACCACTACTACTACAACCACTGTCCTCGGTGTTGCACCTGAGAAGGGGCAATTTGAGGGAGTTGGCAAAGCAGCTGAATCTGGTGAGGGTGCCCATGGCTGCAGCTGTGGTTCCAGCTGCAAGTGCAACCCCTGCAACTGCTAA
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| Protein seq | MSCGGSCNCGSCGCSGGCGKMYPDLAEKITITTTTTTTVLGVAPEKGQFEGVGKAAESGEGAHGCSCGSSCKCNPCNC |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g38010 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0567800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0017930 | SBH | 0.537416 | 2624.176270 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0018050 | SBH | 0.0 | 290.725464 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0018430 | SBH | 8.020730 | 469.894287 | 4.541850 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0017730 | SBH | 0.309281 | 3.519131 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0017320 | SBH | 0.0 | 366.949188 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0309200 | RBH | 0.1706395 | 4.785897 | 0.153998 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0017190 | SBH | 1.500923 | 58.490971 | 3.567671 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0340600 | RBH | 0.4769245 | 10.135693 | 0.7849825 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0017410 | SBH | 2.498048 | 14.331139 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0017690 | SBH | 0.294670 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0017610 | SBH | 0.0 | 1179.054321 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0017630 | SBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0017800 | SBH | 0.0 | 136.400162 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G017390 | SBH | 0.0 | 5.558923 | 0.554442 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0017220 | SBH | 7.552095 | 410.233856 | 12.962114 |
