Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_12g0567300 | OGI:12060640 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr12:23325618-23327055 | ||||||||
| Gene Symbol | R2R3-MYB, MYB48/59, OsMYB48/59 | ||||||||||
| DNA seq | ATAATAACAATATTATATTAAACTTGATTGATAGAAAAGTCGCTAAGGAGATAGCTGGTTGTATTGTGAATACAGAGTGCCTTGCCCACTTGCATTGCATACATCAAGGACCAAGTGGCAAAAGCTATCTTGCACACTAGCTAGATACATGAAACATGAGCACACTTGCAATGTTACATAGCTGTAAATATTTAGATCCATGCTAATGATTCTTCTACAAAAGCACTTCACTTCTGCTAGGTGGATAATTAACTTGGGTAACCTAGTTCAATATATTGCTTCAATAACATGGGCCCACCCCTTTACCATAACCAAATTGTGGTGCTACCTTGATCTCATCATCCATCCTCAAGCATGTTTCTGGGCAATAGTAATCCCACATAGGATATGGCAATAGAGGACCAGATAGGCTATTGGATGCACTATCCTTTGCTTCATCAAAACATGGCCCTGGGAGCACATTTGGTGCCTCAATTTCCATCCATATCTGATCCATGGGATAACCATCCATGTCAACAGGGGTGCTTTTCATGATGCTTGTGATGCAGCCACTGCCGCCATGAAGTTCCTGCTCCTCAATTCCAATGATCATTGACGGGGTCTCTGGGTGGCAAGATTGGTATGTCAGTGAAGACGAGGATGATGAGGGTGACATGTTACTCTTCCTCTCCTGTGCTTTCTTCCTCATATGTGTCCTCCAGTAGTTCTTGATCTCATTGTCAGTACGTCCTGGCAGACGCCTTGCTATCCTGGACCACCTATTGAGGAGAACACCAAATATATCATCCATAGTAGTAGAGAAATTAAGCTCTTTGTTCTTGACATTATCCTTTGGATCATATCATACCTGTTTCCCCACCGAGCATGGAGCTCAAGGATGAGGCGCTCTTCATGCGGAGACATGCGCCCACGCTTGAGGCCAGGGTGGAGGTAGTTGACCCACCGGAGGCGGCAGCTCTTGCCTGTGCGATTAAGGCCTGCATGGAGATACAAACAGTGTGTGCAAGAAGAGAACTCGGTTAGAGATGGTGGCGTTTCCTGTTGCGACTTAGCGCGAAGGAATTCAATATAGCTACCTAATTTTTGGATCCCCCACCCCTCAAACCTGATACTTTGGCAATGAAATCCCAACGACGTTCACCGAACAATCGGACAGTGCATACCAGTTGCAGGTCCTCCTGCTCTGTCCATGGCCCTTTGCGTATCTCTTCTCTCACTGTCACCATATTGATTACCCTAGTATATGATGACAGTGTTGCACTAACGCTGCTCGCTCCTACCTTGTATCGGCTCGGAGCCGGTCTTCTTGCTCTTCTTCCACCTCTGTGTGCTTGTTGGCTCCAGCTTCAGGATGTGATCCTTGATGAACTCCAGCCTGTTCAGCAGCAGAGGAAAACTAGCTACTAGAGAGAGTAAACCACTTTGGTTTGTTTGCCCT
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| CDS seq | ATGGTGACAGTGAGAGAAGAGATACGCAAAGGGCCATGGACAGAGCAGGAGGACCTGCAACTGGTATGCACTGTCCGATTGTTCGGTGAACGTCGTTGGGATTTCATTGCCAAAGTATCAGGCCTTAATCGCACAGGCAAGAGCTGCCGCCTCCGGTGGGTCAACTACCTCCACCCTGGCCTCAAGCGTGGGCGCATGTCTCCGCATGAAGAGCGCCTCATCCTTGAGCTCCATGCTCGGTGGGGAAACAGGTGGTCCAGGATAGCAAGGCGTCTGCCAGGACGTACTGACAATGAGATCAAGAACTACTGGAGGACACATATGAGGAAGAAAGCACAGGAGAGGAAGAGTAACATGTCACCCTCATCATCCTCGTCTTCACTGACATACCAATCTTGCCACCCAGAGACCCCGTCAATGATCATTGGAATTGAGGAGCAGGAACTTCATGGCGGCAGTGGCTGCATCACAAGCATCATGAAAAGCACCCCTGTTGACATGGATGGTTATCCCATGGATCAGATATGGATGGAAATTGAGGCACCAAATGTGCTCCCAGGGCCATGTTTTGATGAAGCAAAGGATAGTGCATCCAATAGCCTATCTGGTCCTCTATTGCCATATCCTATGTGGGATTACTATTGCCCAGAAACATGCTTGAGGATGGATGATGAGATCAAGGTAGCACCACAATTTGGTTATGGTAAAGGGGTGGGCCCATGTTATTGA
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| Protein seq | MVTVREEIRKGPWTEQEDLQLVCTVRLFGERRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGRMSPHEERLILELHARWGNRWSRIARRLPGRTDNEIKNYWRTHMRKKAQERKSNMSPSSSSSSLTYQSCHPETPSMIIGIEEQELHGGSGCITSIMKSTPVDMDGYPMDQIWMEIEAPNVLPGPCFDEAKDSASNSLSGPLLPYPMWDYYCPETCLRMDDEIKVAPQFGYGKGVGPCY |
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| Function | Myb-related protein MYBAS2 [UniProtKB/Swiss-Prot:Q4JL76] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0567300 | OsNip_12t0567300-00 | Chr12 | 23325673 | 23327055 | - | RAP2018-11-26 | ||
| CDS seq | ATGGTGACAGTGAGAGAAGAGATACGCAAAGGGCCATGGACAGAGCAGGAGGACCTGCAACTGGTATGCACTGTCCGATTGTTCGGTGAACGTCGTTGGGATTTCATTGCCAAAGTATCAGGCCTTAATCGCACAGGCAAGAGCTGCCGCCTCCGGTGGGTCAACTACCTCCACCCTGGCCTCAAGCGTGGGCGCATGTCTCCGCATGAAGAGCGCCTCATCCTTGAGCTCCATGCTCGGTGGGGAAACAGGTGGTCCAGGATAGCAAGGCGTCTGCCAGGACGTACTGACAATGAGATCAAGAACTACTGGAGGACACATATGAGGAAGAAAGCACAGGAGAGGAAGAGTAACATGTCACCCTCATCATCCTCGTCTTCACTGACATACCAATCTTGCCACCCAGAGACCCCGTCAATGATCATTGGAATTGAGGAGCAGGAACTTCATGGCGGCAGTGGCTGCATCACAAGCATCATGAAAAGCACCCCTGTTGACATGGATGGTTATCCCATGGATCAGATATGGATGGAAATTGAGGCACCAAATGTGCTCCCAGGGCCATGTTTTGATGAAGCAAAGGATAGTGCATCCAATAGCCTATCTGGTCCTCTATTGCCATATCCTATGTGGGATTACTATTGCCCAGAAACATGCTTGAGGATGGATGATGAGATCAAGGTAGCACCACAATTTGGTTATGGTAAAGGGGTGGGCCCATGTTATTGA
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| Protein seq | MVTVREEIRKGPWTEQEDLQLVCTVRLFGERRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGRMSPHEERLILELHARWGNRWSRIARRLPGRTDNEIKNYWRTHMRKKAQERKSNMSPSSSSSSLTYQSCHPETPSMIIGIEEQELHGGSGCITSIMKSTPVDMDGYPMDQIWMEIEAPNVLPGPCFDEAKDSASNSLSGPLLPYPMWDYYCPETCLRMDDEIKVAPQFGYGKGVGPCY
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0567300 | OsNip_12t0567300-01 | Chr12 | 23325618 | 23327055 | - | IsoSeq | ||
| CDS seq | ATGGTTATCCCATGGATCAGATATGGATGGAAATTGAGGCACCAAATGTGCTCCCAGGGCCATGTTTTGATGAAGCAAAGGATAGTGCATCCAATAGCCTATCTGGTCCTCTATTGCCATATCCTATGTGGGATTACTATTGCCCAGAAACAT |
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| Protein seq | MVIPWIRYGWKLRHQMCSQGHVLMKQRIVHPIAYLVLYCHILCGITIAQKH |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr12 | 23326594 | 23326723 | - | OsNip_12t0567300-01 | OsNip_12t0567300-01,OsNip_12t0567300-00 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.961053 | 0.000000 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g37970 | RBH | 0.593144 | 0.234538 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0567300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0017680 | RBH | 1.223718 | 2.871046 | 2.081643 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0017800 | RBH | 0.561746 | 2.002545 | 1.557791 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0018160 | RBH | 2.764634 | 0.000000 | 2.165489 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0017490 | RBH | 0.156047 | 0.290415 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0017060 | RBH | 11.964734 | 21.219698 | 7.418816 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0308800 | RBH | 4.142112 | 18.5201645 | 2.53917 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0016960 | RBH | 0.158789 | 1.052938 | 0.762146 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0340100 | RBH | 10.184259 | 27.6351365 | 10.9096775 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0017200 | RBH | 1.701728 | 1.860825 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0017460 | RBH | 1.194736 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0017400 | RBH | 0.000000 | 68.797737 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0017430 | RBH | 1.333439 | 0.0 | 0.333523 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0017590 | RBH | 0.499575 | 10.585815 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G017320 | RBH | 1.382405 | 0.000000 | 0.776462 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0016990 | RBH | 1.509915 | 62.827080 | 2.319820 |
