Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_12g0551200 | OGI:12024450 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr12:22328237-22334839 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATCTCAACCGTTTCATAGTGAGTTTTTACTTGAATGTTTGATAAGTAGATGGGACAAATAGCTAGATTTCAGCACACATGCTACAGAATAAGGAGTTTATCCTACAGAATATCTTTATGACAAACAATTTTCTGGGAACGCCAAAGTTCTTTATTGTGAATATCAGCAGATTAGTTGATAATCTACTCAATCTACTGGTTTCCATTCATAGTGCTAGCTGGTGTAGTTGCCACATTTTTTTCCTTCTTATTCTTCATAAGGCCTTCTGCTTCTTTCACGAGAGAACCGAAGCTTTCAGTCTTCTTTCCGGTATGGTCGCTGCTAGATAACATCATCAACGCTTCCAGTTCAAACATTTGTTCGGAAGCTTTGGACAGAGATACCATCAAGTTCTCCAGCTCTTGTTTGGGGTAGCATCCTTCAAGTTTTAGCAGTGATATGATCATCCTAGTGGCAATCTTCAGAATTCTCAGGCAATTGACTGTTTGTTCACTGTTTTGATCTACCATCGTCCTCAGCTTACCGACAAAGCTGGATGCAGAGTCTCCTCGGGCAATTTCACCAGCAAGTGTATCCAAATCTTTACCATCTCTGATCCGTTTTTCAAATATTGCCACACTAAGTGACAGTAAAGCTGCATGTAGTTTCCTCGTCCTGTCCTTTTTTTTCTTACCAATGTCCTCCTTCTGGTCATTGACGTCGACATTATCTTTCGAAGCAACGGCACCAGCACCTTCTTCAATGTCAGGATCTGTCTTGGTTCCGTCTGTTCCTTTTTCTGCCTTTTCTGCTTGCTTTTCTCCTTGCTTAGGTGGAGAGAGAGAGATAAATATTTCGTTGAGAATCTGCAACGGTAGGATTGATGCTTATTATTTGGCAAGGATAAAAATTCAAGATGCGGTTAGTTAAATAAGAATAAAATCAAACAAAACAAATGCCGCCATTTATTTGAAATTTATCGATCGCAGGACATACCTTCGGTAGCACATTTTGCATGGCTTCCATCAGTTTCTTGAGATAGGAGGCTTCCTTTGTCCTGTGTAGATGCTCGAGTATTTCTGCTGCGCATATTCTGTATTCTGTTTCCTCATCATCTAAAAGCACTGTCTTGAGATCACGGACAACGGTGTCACTTGCCTTGAAGATAATGGTGGCATTGGCATTGGCATTGCTTTTATTTTGGTCGGACAGCAGTATTGCCAGTATGCCAACTGCCATTTTTCTTGTGGAGGCGTCCTTGTTAGTCAAGAAGATGTCTACGAGCAGCCTGATGTTCGTTTCGCTATATGTTGTGTCTATATTCGAAGACGTCGTCGAAAGTGCTTCCATAGGATGCTGTTGCTGTGTGAAGATGTTAATGGCCTGCATGTGGAGCTTCTTGTTGCTTTGGCATTGCTTACAGATGATAATGTTATTCACTCTGATGTCGTCTTTGTGAATCGTCAAGATGTGGGAGCGCAGATCGTCGCCGGTCTTCCCAGGGGCGCTGACAAGCTGGGACATGAGCTGCAGTGACTCGGTCACGATGTCCTTCCATGCGTCGACATGGCCGTTGTTGTGGATGTGGAGCAGGTCTTTTCTGACGGGCAGCATGGCCTTGGAGATAGTGCTCTGCTTTTTGCCGATGAGAAAAAGGTTGTGCTCGTCGGCGGCGGCGAGCTTCTGAAGGATGACGCGGCCCAGCACCATGAGATCCCTGTAGTGAGCGGACGGCGCACTGTCTCCGTCTTGCTGCTGCTGTTCCTGCTGCTCCGTGGTGGTGGTGTCGAGCAGCGACGATATGCACGAGAGCGCCTCCGGGAAGCTGGCGAGGCTGATCTCGCCGGCGAGACGCGACACGATCCGGGCGGCGTGCACCCGGATGTTCCGGTTGTACTGGCTCGCGGACCGAAGCGACCGCAGCAGCTTCTTCATCACCTTCCTGGAGGACGCCGAGCCGACCAGCTTCCTGATCAGCGCGTGCTGCGCCGTCAGGTCCTTCTGCCCGAGGATCGTGTCCAGGATCATCGCCCCGGACACGTAGTCGCTGGACTTGGACTCCGGCTTCATCAGCTCCACGGCAAACGTCACCAGGTTCCACTCTTCTAGGAAGGATGGATCCTTCTCGCACCGGATCTTGGTCTTCTTCATGTACACCTTCACCAATTTGCGCCACGCCCCCGCCCGCGCCCCCGCCCCGCCAGCCTCCTTACTGTTTTGCCAATATTTACTGGCCACCTTTTCGATCAACCTTTTCCCGGCGAAGTAGGACACCCACTGGTAGAAGAAGAGGACGCCCTGGAAGAGTGCCAGTGAGTAGAGCACATTGAGCGCCGGAGTCAGGTTGGCGCTGCCGTCGCCGTCGCCGTAGTCGTGCTGTATGAGGCGCCACAGCGATAGACTAGTGCTGATGACCAGCCCAGACAGGTAGAGCACAGCCAGAGGGCACAGTATGATGGCGAACACCACCGCCTGGATGAACGTCACAAGACGTCCTGCTCGTGAACGCCACAACTGGATGCCCGAGTCGAACTCCTCGTCTTCGCACCTGAACACCATGTCCATAGTAACCAAGAAGCCATCGACTGAATTCACAGCATGGCGCAGCTTTTCGTTCAGGAGAACATCGAACACCCTGTTTAGATCATTCTTACAATTACACGATGGATAGAGAAATATGGTCTCTATATCTGTAAGTAGATATACACACTTAAATGATAAGGATATCCTAACTGCACACGAAAATCAACATGATGTAAACCAAAACAATGATTTACGTCACCCACCACAAGTGGGAAACGAAGATGGTGTAAACTGTGAGGATGAATTACACCTCAAAAACTAGCTCGATGGGAATATGGTCACATTTACCGTACCATGGATCGATTAGGTGCAGTCATGCTAGAAAGGTACAACAGGAGGTGAACTCGCTCTTTATAAAACTTAACATAAATAATGGTAAGAAGTTTATACTACCTAAATGCTTCACATTTGCATTACTATGATTTACACTAAGGAGAATGGCATATGCTCAAGATGAGAAGGATTACAGTTAACAAAAATGGGCTCCTACACTAGCAACGACTAATTACGCTTGAGAGAAGACTGTTTACACAACTGAAGGGAAGGCCAAACTCTAAGGTTTATGCCACCTAGCCAATCAGGAGACATGGTGCATGGCATACATTGTTCAAAAGAGGGTCATTATAGCTTTGAACACAACAAAGCCCACCTCAAAAGCATTTTCCGAGGAGTTAGAATCATTTTACTGAATACTGCGTAGGAGCTGAAAGGTCGTGCACGAACCAGAGAAAACTCTTTGCATTCTTCATTATCTTGCCATTAAACACCAGAACTTGGTTGTTCATGTTCACACCTTAGTAGGGGGATGTTTCTAGTATAAATACTCCTCTACTCCATCTATTAGAGAACTATTGTTCAAGTGAAAAACTCTTGGATGAGAGATTGCTGAAGACCGTGTATTGTCTTACCCCCAATGCTCTTGAGTATTCTTTGGACTTATGAGAAGGATTCTCATAGACCCCCTAGTTCATGTGTGAAGTAGATCCGGATTGTGGTTTTACGATTTTTTTAATTGTTGTATTGGAGTATAAGATGTTTCGAATCATTCTCTCCCTAACTACTTGGCCGCATCGACCTTGGTAAGAATAAAGCTAGCTATCATTTTGCTACACGCAGCTAGTTACCGTTAAGCTGCTCTGTTTATGCTGGTGTTCCTTGCTTCAAACCTATTGCCCTGAATTGAAGATATATATGGACCCCCCCCTTGGTGAGTGAGTTTGTGTCATATGTCTTTCTTTGACATGGTAGGTTTATCATTCACATATAGCTTCTTTCCATTAGATATTTGAGTGTTCTTATTGATTTTGATTCCATCCAATGGTCTACAAAATACCAAAGCTTTGCTAGTATCTTGTGTCATTCGCTTTCATCGTGTTGCTAGTTCCCGTTGCAATTTTTATTGTCGCAACTCCTTTTTGTTTCATGTTTTTGTTGGTTCAAGTTAAAAAGATAGGAAAAAAAAAGAGGTGAGAAGAAGTGAAAAAAATAAAAAAGATGAAGAAGAAAGGGGACACCATATTTTACACAAGAAAGTTGAAGGTTTTGGATGGTGCTGTAGTAATTACTATTATATTTTTCTGTTGCTTTGGAACTGCAGCATAGGTATAACTGCAAATTATGTAGGTATTCTGTCGAACTTCAAATGTTCTAACTTTGATTGAAATCTCATGTAATAACAAATTATGTTTCAATATTTTTCCCTATTATCTCGTAAAAAATATTTTTCCTTGTTGATTCATGCCATTTGATTTTTGAACCTTATGGCAATTTCATTTCCTAATAAGTAAATACTATATAGCAAATAAACTTGCTCTATACTTCGTCCAAATACATTTGTTTCAATGAATACATGATTTTGTTGACAAATATATCTGTTTACAACCAAATTTGACATTTGGATAAATTTATAGCAAGTTTAGGCTAGATTTGTAACAAACAGAGCTTTCCCATGGCTGGTTGGACCAGAGGGTGAACTGTGGTTGAACCGCTATTTTGTGGCCCAGTTGGACCGGTGGCCCAGAGTCTGAATCCAATCAAGGCAGTTCGCGTGTTTCCTAGCATAGGCCTAAGGTTAGTTGAGTCCTAATTGATCTCTAAGTCTAATATCCAATTAAGGCAGTTCGCGTGTTTCCGAGCATAGGCCTAAGGTTAGTTGAGTCCTAATTGATCTCTAAGTCTAATATGACGTGCAAAAGGCTTGTGAAGACATCAATTAAATCATATTTTTTACCTTTACCTTCTACCAAGTACTCTGGTTCGTCCATCTTTATCGGCATCATAAAACATATGCTTTTGCTTGAGAGTGTGAAATCCTTAGGTTTGTCCCGTAAATCTTTTAATTCGCTCACGAGAAGAGTAGTTATCTCCAAATCAAACTAAATTAGTCTAGAGGCTGGTTTTCTAAATCCATCTTGACCAAGAGCTTTTATAGATCAATGTGATTAGTGACTCTGCTAGCACCGTAAATATTTAGGTGAGTCTATGTTGGCGAAGAAAACACCAACAATATCTTTAATACATTTTCTTCTTATCAATTTAGTATTTACTCCCTCCATACTGATAATACTTATCGTTTTAGACAAGGGTGAGGTCAAACTTTAGAATCTTTTATTATAAATCATTTTAAAAATATTTGTATTTCGTATATGGTGACTACATGTATACACTAGTCTTAAAAAGTAATTTAATAAAATCATATATTTATTAACACTTTTATACATATTATAATAGAAAATAATGGTCAAAGTTGTTTTTTTGGGAGATTGTGCTCTTGTCCGAAACACAAGTATTATCAACCCGGAGGGAGTATTAGTTTAATATGAAGATATATAATACTCCCTCCATTTCAGGTTATAAGATGTTTTGACTTTGTTTAAAGTCAAACTGCTTTAAGTTTGACTAAGTTTAAAGAAAAAGTAATAGCATTTTTAACCCAAGAAAAATTATAGAAAATTTAATAAGCCTAATTAATCCGTCGTTAGTACATGTGGGTTACTGTACCACTTATGGCTAATTATAGACTAATTAGGATCAAAAGATTCGTCTCGTGATTTCCATGCAAACTGTACAATTAGTTTTTTATTTTATCTATATTTAATGCTCCATGCATGTGTCTAAAAATTTGATGTAATATTTTTGGGAAAAAAATTTTGGGAACTAAACAAGGCCTTAGTATTAGTCAGGTCTTTTGCGATGTCAATCATGTAGCTCTGAGCTTGCAGTTGCTGTGGGAAAGGAGTTTGCTTGCTCTGAGCTTCTCAAGAACTCTCTATGGAAGAAGGTCGTTTAGCTTGGCAGATATAGAGATGTTAGTATGTCCCTAGCAGATGTCTGTTTACCAATGCTAGTATATAGGCAAACTAGCTGGAGTTCCCAGCAATAAACCTGTAAGATGCTTATGCTTTCGGAAAAAAAAAACAGCGCGTATAGCTAGCCTTTCCTCTAAAAATCCTACGCAGCATAAACACGTAGTGAAACATGAGGTAGGATGAGTGACAGAGTGTATGCTTCCTTTCCTATGGAATTCCACTAATGCTACAGTCTCCCAACGAAATTCGACCGCAGCATTCCTCCCCCAGAAATGAACATCAACAGTAGTAGAAATTCCTCCAGAGGAACGAAGGATAACTACTGAAAATCCTTTGTTCCAAAAGTAGATTTGTTTATTATAGGGAAAGACCAAAAGAGTCAAATAAAAAGCCACACAGGTTTGGCGAAGAACATTACTAAGCAGGAAAGCTTCAAAATAAATAAATAAATATATATATTGAAAGTAAGCAGTCTAACCCTGCTGTTTGGACGAGTGTGATGATGGTGAGACTCCAGAAATCCTTCTTCTCAAGCATAGAGACGAAGCCACCAAGAAGAACAACGGTGGTCCATAAACCCACCAAGAAGCCCACCCCTTTGACGGCCATCGACAGGTACCCTACAAACAGAGCATGGTTGTTGATATATTTAACTTCCAGCCACTCAGAGTGATCAAGCCCATAAGCCATTGTTAGTTCGTCCTCAAAAGAGTGAGGTCATTTGCAATGGAGC
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| CDS seq | ATGGCTTATGGGCTTGATCACTCTGAGTGGCTGGAAGTTAAATATATCAACAACCATGCTCTGTTTGTAGGGTACCTGTCGATGGCCGTCAAAGGGGTGGGCTTCTTGGTGGGTTTATGGACCACCGTTGTTCTTCTTGGTGGCTTCGTCTCTATGCTTGAGAAGAAGGATTTCTGGAGTCTCACCATCATCACACTCGTCCAAACAGCAGGGGTGTTCGATGTTCTCCTGAACGAAAAGCTGCGCCATGCTGTGAATTCAGTCGATGGCTTCTTGGTTACTATGGACATGGTGTTCAGGTGCGAAGACGAGGAGTTCGACTCGGGCATCCAGTTGTGGCGTTCACGAGCAGGACGTCTTGTGACGTTCATCCAGGCGGTGGTGTTCGCCATCATACTGTGCCCTCTGGCTGTGCTCTACCTGTCTGGGCTGGTCATCAGCACTAGTCTATCGCTGTGGCGCCTCATACAGCACGACTACGGCGACGGCGACGGCAGCGCCAACCTGACTCCGGCGCTCAATGTGCTCTACTCACTGGCACTCTTCCAGGGCGTCCTCTTCTTCTACCAGTGGGTGTCCTACTTCGCCGGGAAAAGGTTGATCGAAAAGGTGGCCAGTAAATATTGGCAAAACAGTAAGGAGGCTGGCGGGGCGGGGGCGCGGGCGGGGGCGTGGCGCAAATTGGTGAAGGTGTACATGAAGAAGACCAAGATCCGGTGCGAGAAGGATCCATCCTTCCTAGAAGAGTGGAACCTGGTGACGTTTGCCGTGGAGCTGATGAAGCCGGAGTCCAAGTCCAGCGACTACGTGTCCGGGGCGATGATCCTGGACACGATCCTCGGGCAGAAGGACCTGACGGCGCAGCACGCGCTGATCAGGAAGCTGGTCGGCTCGGCGTCCTCCAGGAAGGTGATGAAGAAGCTGCTGCGGTCGCTTCGGTCCGCGAGCCAGTACAACCGGAACATCCGGGTGCACGCCGCCCGGATCGTGTCGCGTCTCGCCGGCGAGATCAGCCTCGCCAGCTTCCCGGAGGCGCTCTCGTGCATATCGTCGCTGCTCGACACCACCACCACGGAGCAGCAGGAACAGCAGCAGCAAGACGGAGACAGTGCGCCGTCCGCTCACTACAGGGATCTCATGGTGCTGGGCCGCGTCATCCTTCAGAAGCTCGCCGCCGCCGACGAGCACAACCTTTTTCTCATCGGCAAAAAGCAGAGCACTATCTCCAAGGCCATGCTGCCCGTCAGAAAAGACCTGCTCCACATCCACAACAACGGCCATGTCGACGCATGGAAGGACATCGTGACCGAGTCACTGCAGCTCATGTCCCAGCTTGTCAGCGCCCCTGGGAAGACCGGCGACGATCTGCGCTCCCACATCTTGACGATTCACAAAGACGACATCAGAGTGAATAACATTATCATCTGTAAGCAATGCCAAAGCAACAAGAAGCTCCACATGCAGGCCATTAACATCTTCACACAGCAACAGCATCCTATGGAAGCACTTTCGACGACGTCTTCGAATATAGACACAACATATAGCGAAACGAACATCAGGCTGCTCGTAGACATCTTCTTGACTAACAAGGACGCCTCCACAAGAAAAATGGCAGTTGGCATACTGGCAATACTGCTGTCCGACCAAAATAAAAGCAATGCCAATGCCAATGCCACCATTATCTTCAAGGCAAGTGACACCGTTGTCCGTGATCTCAAGACAGTGCTTTTAGATGATGAGGAAACAGAATACAGAATATGCGCAGCAGAAATACTCGAGCATCTACACAGGACAAAGGAAGCCTCCTATCTCAAGAAACTGATGGAAGCCATGCAAAATGTGCTACCGAAGATTCTCAACGAAATATTTATCTCTCTCTCTCCACCTAAGCAAGGAGAAAAGCAAGCAGAAAAGGCAGAAAAAGGAACAGACGGAACCAAGACAGATCCTGACATTGAAGAAGGTGCTGGTGCCGTTGCTTCGAAAGATAATGTCGACGTCAATGACCAGAAGGAGGACATTGGTAAGAAAAAAAAGGACAGGACGAGGAAACTACATGCAGCTTTACTGTCACTTAGTGTGGCAATATTTGAAAAACGGATCAGAGATGGTAAAGATTTGGATACACTTGCTGGTGAAATTGCCCGAGGAGACTCTGCATCCAGCTTTGTCGGTAAGCTGAGGACGATGGTAGATCAAAACAGTGAACAAACAGTCAATTGCCTGAGAATTCTGAAGATTGCCACTAGGATGATCATATCACTGCTAAAACTTGAAGGATGCTACCCCAAACAAGAGCTGGAGAACTTGATGGTATCTCTGTCCAAAGCTTCCGAACAAATGTTTGAACTGGAAGCGTTGATGATGTTATCTAGCAGCGACCATACCGGAAAGAAGACTGAAAGCTTCGGTTCTCTCGTGAAAGAAGCAGAAGGCCTTATGAAGAATAAGAAGGAAAAAAATGTGGCAACTACACCAGCTAGCACTATGAATGGAAACCAGTAG
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| Protein seq | MAYGLDHSEWLEVKYINNHALFVGYLSMAVKGVGFLVGLWTTVVLLGGFVSMLEKKDFWSLTIITLVQTAGVFDVLLNEKLRHAVNSVDGFLVTMDMVFRCEDEEFDSGIQLWRSRAGRLVTFIQAVVFAIILCPLAVLYLSGLVISTSLSLWRLIQHDYGDGDGSANLTPALNVLYSLALFQGVLFFYQWVSYFAGKRLIEKVASKYWQNSKEAGGAGARAGAWRKLVKVYMKKTKIRCEKDPSFLEEWNLVTFAVELMKPESKSSDYVSGAMILDTILGQKDLTAQHALIRKLVGSASSRKVMKKLLRSLRSASQYNRNIRVHAARIVSRLAGEISLASFPEALSCISSLLDTTTTEQQEQQQQDGDSAPSAHYRDLMVLGRVILQKLAAADEHNLFLIGKKQSTISKAMLPVRKDLLHIHNNGHVDAWKDIVTESLQLMSQLVSAPGKTGDDLRSHILTIHKDDIRVNNIIICKQCQSNKKLHMQAINIFTQQQHPMEALSTTSSNIDTTYSETNIRLLVDIFLTNKDASTRKMAVGILAILLSDQNKSNANANATIIFKASDTVVRDLKTVLLDDEETEYRICAAEILEHLHRTKEASYLKKLMEAMQNVLPKILNEIFISLSPPKQGEKQAEKAEKGTDGTKTDPDIEEGAGAVASKDNVDVNDQKEDIGKKKKDRTRKLHAALLSLSVAIFEKRIRDGKDLDTLAGEIARGDSASSFVGKLRTMVDQNSEQTVNCLRILKIATRMIISLLKLEGCYPKQELENLMVSLSKASEQMFELEALMMLSSSDHTGKKTESFGSLVKEAEGLMKNKKEKNVATTPASTMNGNQ |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0551200 | OsNip_12t0551200-03 | Chr12 | 22328237 | 22334829 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCTTATGGGCTTGATCACTCTGAGTGGCTGGAAGTTAAATATATCAACAACCATGCTCTGTTTGTAGGGTACCTGTCGATGGCCGTCAAAGGGGTGGGCTTCTTGGTGGGTTTATGGACCACCGTTGTTCTTCTTGGTGGCTTCGTCTCTATGCTTGAGAAGAAGGATTTCTGGAGTCTCACCATCATCACACTCGTCCAAACAGCAGGGGTGTTCGATGTTCTCCTGAACGAAAAGCTGCGCCATGCTGTGAATTCAGTCGATGGCTTCTTGGTTACTATGGACATGGTGTTCAGGTGCGAAGACGAGGAGTTCGACTCGGGCATCCAGTTGTGGCGTTCACGAGCAGGACGTCTTGTGACGTTCATCCAGGCGGTGGTGTTCGCCATCATACTGTGCCCTCTGGCTGTGCTCTACCTGTCTGGGCTGGTCATCAGCACTAGTCTATCGCTGTGGCGCCTCATACAGCACGACTACGGCGACGGCGACGGCAGCGCCAACCTGACTCCGGCGCTCAATGTGCTCTACTCACTGGCACTCTTCCAGGGCGTCCTCTTCTTCTACCAGTGGGTGTCCTACTTCGCCGGGAAAAGGTTGATCGAAAAGGTGGCCAGTAAATATTGGCAAAACAGTAAGGAGGCTGGCGGGGCGGGGGCGCGGGCGGGGGCGTGGCGCAAATTGGTGAAGGTGTACATGAAGAAGACCAAGATCCGGTGCGAGAAGGATCCATCCTTCCTAGAAGAGTGGAACCTGGTGACGTTTGCCGTGGAGCTGATGAAGCCGGAGTCCAAGTCCAGCGACTACGTGTCCGGGGCGATGATCCTGGACACGATCCTCGGGCAGAAGGACCTGACGGCGCAGCACGCGCTGATCAGGAAGCTGGTCGGCTCGGCGTCCTCCAGGAAGGTGATGAAGAAGCTGCTGCGGTCGCTTCGGTCCGCGAGCCAGTACAACCGGAACATCCGGGTGCACGCCGCCCGGATCGTGTCGCGTCTCGCCGGCGAGATCAGCCTCGCCAGCTTCCCGGAGGCGCTCTCGTGCATATCGTCGCTGCTCGACACCACCACCACGGAGCAGCAGGAACAGCAGCAGCAAGACGGAGACAGTGCGCCGTCCGCTCACTACAGGGATCTCATGGTGCTGGGCCGCGTCATCCTTCAGAAGCTCGCCGCCGCCGACGAGCACAACCTTTTTCTCATCGGCAAAAAGCAGAGCACTATCTCCAAGGCCATGCTGCCCGTCAGAAAAGACCTGCTCCACATCCACAACAACGGCCATGTCGACGCATGGAAGGACATCGTGACCGAGTCACTGCAGCTCATGTCCCAGCTTGTCAGCGCCCCTGGGAAGACCGGCGACGATCTGCGCTCCCACATCTTGACGATTCACAAAGACGACATCAGAGTGAATAACATTATCATCTGTAAGCAATGCCAAAGCAACAAGAAGCTCCACATGCAGGCCATTAACATCTTCACACAGCAACAGCATCCTATGGAAGCACTTTCGACGACGTCTTCGAATATAGACACAACATATAGCGAAACGAACATCAGGCTGCTCGTAGACATCTTCTTGACTAACAAGGACGCCTCCACAAGAAAAATGGCAGTTGGCATACTGGCAATACTGCTGTCCGACCAAAATAAAAGCAATGCCAATGCCAATGCCACCATTATCTTCAAGGCAAGTGACACCGTTGTCCGTGATCTCAAGACAGTGCTTTTAGATGATGAGGAAACAGAATACAGAATATGCGCAGCAGAAATACTCGAGCATCTACACAGGACAAAGGAAGCCTCCTATCTCAAGAAACTGATGGAAGCCATGCAAAATGTGCTACCGAAGATTCTCAACGAAATATTTATCTCTCTCTCTCCACCTAAGCAAGGAGAAAAGCAAGCAGAAAAGGCAGAAAAAGGAACAGACGGAACCAAGACAGATCCTGACATTGAAGAAGGTGCTGGTGCCGTTGCTTCGAAAGATAATGTCGACGTCAATGACCAGAAGGAGGACATTGGTAAGAAAAAAAAGGACAGGACGAGGAAACTACATGCAGCTTTACTGTCACTTAGTGTGGCAATATTTGAAAAACGGATCAGAGATGGTAAAGATTTGGATACACTTGCTGGTGAAATTGCCCGAGGAGACTCTGCATCCAGCTTTGTCGGTAAGCTGAGGACGATGGTAGATCAAAACAGTGAACAAACAGTCAATTGCCTGAGAATTCTGAAGATTGCCACTAGGATGATCATATCACTGCTAAAACTTGAAGGATGCTACCCCAAACAAGAGCTGGAGAACTTGATGGTATCTCTGTCCAAAGCTTCCGAACAAATGTTTGAACTGGAAGCGTTGATGATGTTATCTAGCAGCGACCATACCGGAAAGAAGACTGAAAGCTTCGGTTCTCTCGTGAAAGAAGCAGAAGGCCTTATGAAGAATAAGAAGGAAAAAAATGTGGCAACTACACCAGCTAGCACTATGAATGGAAACCAGTAG
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| Protein seq | MAYGLDHSEWLEVKYINNHALFVGYLSMAVKGVGFLVGLWTTVVLLGGFVSMLEKKDFWSLTIITLVQTAGVFDVLLNEKLRHAVNSVDGFLVTMDMVFRCEDEEFDSGIQLWRSRAGRLVTFIQAVVFAIILCPLAVLYLSGLVISTSLSLWRLIQHDYGDGDGSANLTPALNVLYSLALFQGVLFFYQWVSYFAGKRLIEKVASKYWQNSKEAGGAGARAGAWRKLVKVYMKKTKIRCEKDPSFLEEWNLVTFAVELMKPESKSSDYVSGAMILDTILGQKDLTAQHALIRKLVGSASSRKVMKKLLRSLRSASQYNRNIRVHAARIVSRLAGEISLASFPEALSCISSLLDTTTTEQQEQQQQDGDSAPSAHYRDLMVLGRVILQKLAAADEHNLFLIGKKQSTISKAMLPVRKDLLHIHNNGHVDAWKDIVTESLQLMSQLVSAPGKTGDDLRSHILTIHKDDIRVNNIIICKQCQSNKKLHMQAINIFTQQQHPMEALSTTSSNIDTTYSETNIRLLVDIFLTNKDASTRKMAVGILAILLSDQNKSNANANATIIFKASDTVVRDLKTVLLDDEETEYRICAAEILEHLHRTKEASYLKKLMEAMQNVLPKILNEIFISLSPPKQGEKQAEKAEKGTDGTKTDPDIEEGAGAVASKDNVDVNDQKEDIGKKKKDRTRKLHAALLSLSVAIFEKRIRDGKDLDTLAGEIARGDSASSFVGKLRTMVDQNSEQTVNCLRILKIATRMIISLLKLEGCYPKQELENLMVSLSKASEQMFELEALMMLSSSDHTGKKTESFGSLVKEAEGLMKNKKEKNVATTPASTMNGNQ
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0551200 | OsNip_12t0551200-01 | Chr12 | 22328264 | 22334839 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCTTATGGGCTTGATCACTCTGAGTGGCTGGAAGTTAAATATATCAACAACCATGCTCTGTTTGTAGGGTACCTGTCGATGGCCGTCAAAGGGGTGGGCTTCTTGGTGGGTTTATGGACCACCGTTGTTCTTCTTGGTGGCTTCGTCTCTATGCTTGAGAAGAAGGATTTCTGGAGTCTCACCATCATCACACTCGTCCAAACAGCAGGGGTGTTCGATGTTCTCCTGAACGAAAAGCTGCGCCATGCTGTGAATTCAGTCGATGGCTTCTTGGTTACTATGGACATGGTGTTCAGGTGCGAAGACGAGGAGTTCGACTCGGGCATCCAGTTGTGGCGTTCACGAGCAGGACGTCTTGTGACGTTCATCCAGGCGGTGGTGTTCGCCATCATACTGTGCCCTCTGGCTGTGCTCTACCTGTCTGGGCTGGTCATCAGCACTAGTCTATCGCTGTGGCGCCTCATACAGCACGACTACGGCGACGGCGACGGCAGCGCCAACCTGACTCCGGCGCTCAATGTGCTCTACTCACTGGCACTCTTCCAGGGCGTCCTCTTCTTCTACCAGTGGGTGTCCTACTTCGCCAGCTTCCCGGAGGCGCTCTCGTGCATATCGTCGCTGCTCGACACCACCACCACGGAGCAGCAGGAACAGCAGCAGCAAGACGGAGACAGTGCGCCGTCCGCTCACTACAGGGATCTCATGGTGCTGGGCCGCGTCATCCTTCAGAAGCTCGCCGCCGCCGACGAGCACAACCTTTTTCTCATCGGCAAAAAGCAGAGCACTATCTCCAAGGCCATGCTGCCCGTCAGAAAAGACCTGCTCCACATCCACAACAACGGCCATGTCGACGCATGGAAGGACATCGTGACCGAGTCACTGCAGCTCATGTCCCAGCTTGTCAGCGCCCCTGGGAAGACCGGCGACGATCTGCGCTCCCACATCTTGACGATTCACAAAGACGACATCAGAGTGAATAACATTATCATCTGTAAGCAATGCCAAAGCAACAAGAAGCTCCACATGCAGGCCATTAACATCTTCACACAGCAACAGCATCCTATGGAAGCACTTTCGACGACGTCTTCGAATATAGACACAACATATAGCGAAACGAACATCAGGCTGCTCGTAGACATCTTCTTGACTAACAAGGACGCCTCCACAAGAAAAATGGCAGTTGGCATACTGGCAATACTGCTGTCCGACCAAAATAAAAGCAATGCCAATGCCAATGCCACCATTATCTTCAAGGCAAGTGACACCGTTGTCCGTGATCTCAAGACAGTGCTTTTAGATGATGAGGAAACAGAATACAGAATATGCGCAGCAGAAATACTCGAGCATCTACACAGGACAAAGGAAGCCTCCTATCTCAAGAAACTGATGGAAGCCATGCAAAATGTGCTACCGAAGATTCTCAACGAAATATTTATCTCTCTCTCTCCACCTAAGCAAGGAGAAAAGCAAGCAGAAAAGGCAGAAAAAGGAACAGACGGAACCAAGACAGATCCTGACATTGAAGAAGGTGCTGGTGCCGTTGCTTCGAAAGATAATGTCGACGTCAATGACCAGAAGGAGGACATTGGTAAGAAAAAAAAGGACAGGACGAGGAAACTACATGCAGCTTTACTGTCACTTAGTGTGGCAATATTTGAAAAACGGATCAGAGATGGTAAAGATTTGGATACACTTGCTGGTGAAATTGCCCGAGGAGACTCTGCATCCAGCTTTGTCGGTAAGCTGAGGACGATGGTAGATCAAAACAGTGAACAAACAGTCAATTGCCTGAGAATTCTGAAGATTGCCACTAGGATGATCATATCACTGCTAAAACTTGAAGGATGCTACCCCAAACAAGAGCTGGAGAACTTGATGGTATCTCTGTCCAAAGCTTCCGAACAAATGTTTGAACTGGAAGCGTTGATGATGTTATCTAGCAGCGACCATACCGGAAAGAAGACTGAAAGCTTCGGTTCTCTCGTGAAAGAAGCAGAAGGCCTTATGAAGAATAAGAAGGAAAAAAATGTGGCAACTACACCAGCTAGCACTATGAATGGAAACCAGTAG
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| Protein seq | MAYGLDHSEWLEVKYINNHALFVGYLSMAVKGVGFLVGLWTTVVLLGGFVSMLEKKDFWSLTIITLVQTAGVFDVLLNEKLRHAVNSVDGFLVTMDMVFRCEDEEFDSGIQLWRSRAGRLVTFIQAVVFAIILCPLAVLYLSGLVISTSLSLWRLIQHDYGDGDGSANLTPALNVLYSLALFQGVLFFYQWVSYFASFPEALSCISSLLDTTTTEQQEQQQQDGDSAPSAHYRDLMVLGRVILQKLAAADEHNLFLIGKKQSTISKAMLPVRKDLLHIHNNGHVDAWKDIVTESLQLMSQLVSAPGKTGDDLRSHILTIHKDDIRVNNIIICKQCQSNKKLHMQAINIFTQQQHPMEALSTTSSNIDTTYSETNIRLLVDIFLTNKDASTRKMAVGILAILLSDQNKSNANANATIIFKASDTVVRDLKTVLLDDEETEYRICAAEILEHLHRTKEASYLKKLMEAMQNVLPKILNEIFISLSPPKQGEKQAEKAEKGTDGTKTDPDIEEGAGAVASKDNVDVNDQKEDIGKKKKDRTRKLHAALLSLSVAIFEKRIRDGKDLDTLAGEIARGDSASSFVGKLRTMVDQNSEQTVNCLRILKIATRMIISLLKLEGCYPKQELENLMVSLSKASEQMFELEALMMLSSSDHTGKKTESFGSLVKEAEGLMKNKKEKNVATTPASTMNGNQ
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0551200 | OsNip_12t0551200-02 | Chr12 | 22329026 | 22334839 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCTTATGGGCTTGATCACTCTGAGTGGCTGGAAGTTAAATATATCAACAACCATGCTCTGTTTGTAGGGTACCTGTCGATGGCCGTCAAAGGGGTGGGCTTCTTGGTGGGTTTATGGACCACCGTTGTTCTTCTTGGTGGCTTCGTCTCTATGCTTGAGAAGAAGGATTTCTGGAGTCTCACCATCATCACACTCGTCCAAACAGCAGGGGTGTTCGATGTTCTCCTGAACGAAAAGCTGCGCCATGCTGTGAATTCAGTCGATGGCTTCTTGGTTACTATGGACATGGTGTTCAGGTGCGAAGACGAGGAGTTCGACTCGGGCATCCAGTTGTGGCGTTCACGAGCAGGACGTCTTGTGACGTTCATCCAGGCGGTGGTGTTCGCCATCATACTGTGCCCTCTGGCTGTGCTCTACCTGTCTGGGCTGGTCATCAGCACTAGTCTATCGCTGTGGCGCCTCATACAGCACGACTACGGCGACGGCGACGGCAGCGCCAACCTGACTCCGGCGCTCAATGTGCTCTACTCACTGGCACTCTTCCAGGGCGTCCTCTTCTTCTACCAGTGGGTGTCCTACTTCGCCGGGAAAAGGTTGATCGAAAAGGTGGCCAGTAAATATTGGCAAAACAGTAAGGAGGCTGGCGGGGCGGGGGCGCGGGCGGGGGCGTGGCGCAAATTGGTGAAGGTGTACATGAAGAAGACCAAGATCCGGTGCGAGAAGGATCCATCCTTCCTAGAAGAGTGGAACCTGGTGACGTTTGCCGTGGAGCTGATGAAGCCGGAGTCCAAGTCCAGCGACTACGTGTCCGGGGCGATGATCCTGGACACGATCCTCGGGCAGAAGGACCTGACGGCGCAGCACGCGCTGATCAGGAAGCTGGTCGGCTCGGCGTCCTCCAGGAAGGTGATGAAGAAGCTGCTGCGGTCGCTTCGGTCCGCGAGCCAGTACAACCGGAACATCCGGGTGCACGCCGCCCGGATCGTGTCGCGTCTCGCCGGCGAGATCAGCCTCGCCAGCTTCCCGGAGGCGCTCTCGTGCATATCGTCGCTGCTCGACACCACCACCACGGAGACAGTGCGCCGTCCGCTCACTACAGGGATCTCATGGTGCTGGGCCGCGTCATCCTTCAGAAGCTCGCCGCCGCCGACGAGCACAACCTTTTTCTCATCGGCAAAAAGCAGAGCACTATCTCCAAGGCCATGCTGCCCGTCAGAAAAGACCTGCTCCACATCCACAACAACGGCCATGTCGACGCATGGAAGGACATCGTGA
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| Protein seq | MAYGLDHSEWLEVKYINNHALFVGYLSMAVKGVGFLVGLWTTVVLLGGFVSMLEKKDFWSLTIITLVQTAGVFDVLLNEKLRHAVNSVDGFLVTMDMVFRCEDEEFDSGIQLWRSRAGRLVTFIQAVVFAIILCPLAVLYLSGLVISTSLSLWRLIQHDYGDGDGSANLTPALNVLYSLALFQGVLFFYQWVSYFAGKRLIEKVASKYWQNSKEAGGAGARAGAWRKLVKVYMKKTKIRCEKDPSFLEEWNLVTFAVELMKPESKSSDYVSGAMILDTILGQKDLTAQHALIRKLVGSASSRKVMKKLLRSLRSASQYNRNIRVHAARIVSRLAGEISLASFPEALSCISSLLDTTTTETVRRPLTTGISWCWAASSFRSSPPPTSTTFFSSAKSRALSPRPCCPSEKTCSTSTTTAMSTHGRTS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr12 | 22329212 | 22330850 | - | OsNip_12t0551200-03 | OsNip_12t0551200-01,OsNip_12t0551200-03 | All |
| RI | Chr12 | 22329212 | 22330850 | - | OsNip_12t0551200-03 | OsNip_12t0551200-02,OsNip_12t0551200-03 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g36490 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0551200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0016730 | RBH | 0.0 | 1.256456 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0016870 | RBH | 0.0 | 0.383760 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0017210 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0016540 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0016050 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0294600 | RBH | 0.018142 | 0.1240575 | 0.012992 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0016020 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0327100 | RBH | 0.00667 | 0.0373135 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0016240 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0016450 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0016440 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0016430 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0016640 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G016430 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0008250 | SBH | 0.0 | 0.0 | 0.0 |
