Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_12g0510500 | OGI:12052670 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr12:19663449-19667757 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ACACTGTCTTGCTCGCTCATTGTCTCTCTCTGCATTTGGGGGTGTGTCAGAAGAGAGATGGAGGAATTCCTGACCAGAATGGTTGATCAGCTAAGTACCATGGCCGTGTCGGGGTTGGCTTCCATGTTGGGTGCGCAGCAGCGAGTGGACTCGCTGGTCGACGAATGGGAGACGCTCGAGAGCTTCCTCAAGGCCACGGCATGGATCTGCGGCAAGACGCGACGGCGAGGCGGTGGCTTAATTCTCTCAGGGACGTTGCTTACGACGCGGAGGACCTCATCGAGAGCGCGGTGCTGCAGCAGCAGGGTGACAGGTACTCTGCCGTGAACTCGGTTCTCCATCCGATTAGTCGTTACAGGTCTGCCCAGAAGGTGGAGGAGATCAGGTCCAGGATCCGTGACATGGTAGACCGCCGGACCAGCTATGCTGCCATGGCACGTGAGCTTGGACATTGAGCTGGAGAGACCAGCATCAGCCCCATCAGTCGTCATTTCGTCTCCTGTTCCAGGTCAGTTTTCAATGTCGTGGAGCTCAAAAACCATTCTCGAGATGTACTCCATCTGTCCCAAAATACTCCATTCTCGTGCAGTAAATTGATTTGTGGTTTCCGTGTCCAACTTTTGACCATCCGTCTTATATGAAACTTTTTTTATTAGTATTTTTCTTTTTATTAGATGATAAAACATGAATAATAGTTTATACGTGAATTATCTTTTTGAATCTTTCCATAATTTTTTGAAATAAAACGGACGGTCAAAGGTTATATACGGAAACCCACGAATCAACTTATTTTGAGACAGAGGAAGTAAGGATCAGGAAATCATGTGGAAAATTTTAAGTCTAAACAAATTAAGGCCCTCTCTGGCACAGATCTAGACCACATATCCATGCATGATTTGAATTTCCAGTGTTGACTTATACTACCTCCGTCCCATAATATAAGGGATTTTTGCTACAATTGTATAGCCAAAATCCCTTATATATTACTTCCTCCGTTTCATAATGCAAGACTTTCTAGCATTGTCCACATTCATTTAAATGTTAATAAATCTAGACATATGTATGTGTTTAGATTTATTAACATCTATATGTTTGTGGGCAATGCTAGAAAGTCTTATATTGTGAAACGGAAGGAGTATAGGACGGAGGGAGTAGTGTTTTAAAATTTTATATTTCATATATAATGGAAACAAACTGATTCATTCAAATGGTAAAAACAAAATCGTAGATCCAGATGCATGGATTTGTAGACCAGTGATTGCAATTTCGGTTCGAAATTTCGGTAATGTCTCACCCCACCGACAAATCAATATATCGACCAAAATTTTTAGATTTTCTCAAATGTTTGTTGAATTTGGTCAAATTTTATTCATATCTAGTCAAAATTTGTTAAAATTTTAAAAAAAAAATCGGTCCGAAAAGTGCCGAAAATCACAAAATTTCGGTCCAACCGTCACCAAAATTTGGCCAAATCGAAAATGCAAACCCTGTTGTAGACTAGGAATATGCAGCTTCACAAAATCTTGGATTTGGGGCTATGCCAAATTGGGCCTAAGTTTAAAAAAAATATCTGAAATTTTTGCCAAAAATAAATTCCTATCTCGGAGAACAAAATTTTAAACCGAAATATTGAACCCTGTGTCAGGTGGCGGAGTTCATCTTACCACATAGGCAACAATACCATCTTTGGTCTTGAACAAGACACTGATATGATCATGGAAAGGCTGCTCCAACCTACTGAACATCGAGAGGTGATTGTGATAGTTGGCATGGGAGGGATAGGCAAGACAACCCTTGCATCTCTTGTTTTCAACAAGGCTCGTGGAGTTGAAGAAAGGAACACTTGGTCTGGCCAAGCTCCACCCAAAGCAACAGATCCAGGAAGCAGCAGCAAAAGAAGTCATTTTGACGTCTGTGCTTGGGTTCCAGTTGGTCAGGATCCTGATACTCTCCACCTCTTCAGTACCATATCTATTCAGATTGGAGCTAATTTGGATCTATCACGTGATGTGGCTGAAATAAAACATCATATGTTCACCTTTCTGCTTGATAAGAGGTACCTGATTGTTCTGGACGACGTCTGGAGAGAAGAAACATGGCATGAATTGGTTGACGCTTTCCCCATGTCGACAAATGGGAGCAAAATCCTGATGACAACTCGCTCCAAGGTAATAGCCATTTCTGCCGACCCTGCTTCATATCCACATGAGCTGAATCCCTTGAGTGATGAGGTGAGCTTTCACCTCTTCCTATCCAAAGTTTTCCCAAATAGCAACCTTAATCAAGCAATGTCGTATCCACCACTGATGGAGGATTTGGGGCGCCAACTCAGCAAGAAATGTGGTGGTTTACCTCTTGCACTTGTGGTTCTAGGAGGCCTACTATCAGCCAAGGAAAAGAAACACGATGTATGGAGCAGCATACTGAATAGCATGAACTGGAACGACAATGAAGCTGAGAAACAGTGCCTGAAAATATTGGCCTTAAGCTACGACGACTTGCCCTATCGTATGAAACTGTGTTTTCTTTATCTAGGAGCTTTCAGAGAAGAATCTGAAATCAGTATCTCTAAATTGACAAAGCTATGGATTGGAGACGATCTTATACCTCAGCAAAGTGGAAGAAGAAGAAAAGAGGACACGGCCACTGACTATTTAAATGAGCTCATTCAAAGGTGTCTCGTGCAACCTGTTCTTCTGAAACATAAGCAGCGATCAACGAGGGTGCGTGTCCATGCTCTATTGCGTGAGCTAGCAATATCAGAAGGAAGAGAAAACAGATTCCTTTATTGTGAATATAGCAACCAAGCAGTGTCGGAAATGGAGATGGAAACCCTATCGTCGTTTGGTTCTCCATCCGGGACCCAATAAACGTTATAATCTGCATGATTTCGAGAAGATGAGAGCTCTGTTAATCGTCCCACGAACAACGGGAACTCAAACCATTTGTGTTGGCCATCAGGTTATCAGACCATTCTTTCCGCTAATTTTTAGATGGTGTAGAATCAACTGGCAAACAGTTTGGAGCATGCCTTATATAAGAGTTATTGAAGTCGAAGGATTGATGATGCCAACGGATGCTCTGAGATCCATCCAGAGTAGCCTAATTCATTTAAGGTACTTGTGCCTAAGAAACACCCAGTTGGTTGCGTTCCCGTTCAATGAGAGCAAGTTCCCATCTCTACAAACACTAGATATAAGAGAGACATCAGTCAAGAAGCTACCTGATACCATTTGGGCTCTTAAGACACTTCGTCATCTGTACCTGAACGGAATGGAACCTCCAAGTATAAGATGCCTCACCAATCTACAAACGTTTTGTGGGGTCTTAGTTTCCAATGATCAGATTGCCATGGAATTTTTAACATTAAAAGATCTGAGGAAATTACAAATTGAACTCAAAGCATGGAATGGATACCCTCTACTGGTAAAATCTCTGAAGCTGCTGCTGGCTCTCACCTCATTCAAGTTGTCTTCCACAGAAATCTCTTCAGAAGTGATTAACAAAATAGCACACCATTCACCGCTGCGCAAGCTGCATCTCCAAGGCATGCTACATCCTCCTGTCCTGACTCTAAGCGAATATTTTTCAGATTACATCACGAGCATCACATTGTCAGCCTCGAGAATTGGCACTGATCAATTAAAAACACTTGGCAGTCTGACATGTCTATGGGAACTCAAGCTAAAAGATGATGCACTCTTGCCATGTCCACAGCACAGCTTTCCTCAGCTGGGATATTTAAAGATCAGTAGCCTAACCAACCTGGAGGCATTCCGAATCGAGCGCGGTGCTTTTTCCAACCTCGTCCGCTTTTCAGTACACTATTGCAGTAAGTTTCGTAGCATCATCGATGTCCTGGAGCATACTACGAGCCTGCAGGTCCTGAAGCTCAAGGGAATGGAACTTCTACCGGATATTACTGATTCTTGTAGAAACAAAAATGTTTCTGTTATCACTATGGCTTATTAGCTAGAGTGCTAATTTGGTAAAATTTCTGCGTCCATAATTGGGACAAGATCAGCGTTGATTTGGTACTCTCTGGATGTCAAAGCATATCGTTTTGGTCGTGTTTCAAGTTGAACTTTATAGATTTTAAACATCTATATCTATATGCATTGAGTATCAATATATGTAATTTGTATTGATTTTATCGAAGAACCAACTTTTTCCATAAGTTTGTTTGACATGTGGGCTCAACTGGCAATGGTGTAAGACTGTAAGTGTTACATTTGTGTTTGATGGTTGATCTGACCTATCAGACAAACAGAGCTTGCAGTTCTCTAATAAAATCAAAAGTTGATGTTGC
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| CDS seq | ATGGGAGACGCTCGAGAGCTTCCTCAAGGCCACGGCATGGATCTGCGGCAAGACGCGACGGCGAGGCGGTGGCTTAATTCTCTCAGGGACGTTGCTTACGACGCGGAGGACCTCATCGAGAGCGCGGTGCTGCAGCAGCAGGGTGACAGGTACTCTGCCGTGAACTCGGTTCTCCATCCGATTAGTCGTTACAGGTCTGCCCAGAAGGTGGAGGAGATCAGGTCCAGGATCCGTGACATGGTAGACCGCCGGACCAGCTATGCTGCCATGGCACGTGAGCTTGGACATTGA |
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| Protein seq | MGDARELPQGHGMDLRQDATARRWLNSLRDVAYDAEDLIESAVLQQQGDRYSAVNSVLHPISRYRSAQKVEEIRSRIRDMVDRRTSYAAMARELGH |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0510500 | OsNip_12t0510500-01 | Chr12 | 19663449 | 19667757 | + | RAP2018-11-26 | ||
| CDS seq | ATGGGAGACGCTCGAGAGCTTCCTCAAGGCCACGGCATGGATCTGCGGCAAGACGCGACGGCGAGGCGGTGGCTTAATTCTCTCAGGGACGTTGCTTACGACGCGGAGGACCTCATCGAGAGCGCGGTGCTGCAGCAGCAGGGTGACAGGTACTCTGCCGTGAACTCGGTTCTCCATCCGATTAGTCGTTACAGGTCTGCCCAGAAGGTGGAGGAGATCAGGTCCAGGATCCGTGACATGGTAGACCGCCGGACCAGCTATGCTGCCATGGCACGTGAGCTTGGACATTGA
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| Protein seq | MGDARELPQGHGMDLRQDATARRWLNSLRDVAYDAEDLIESAVLQQQGDRYSAVNSVLHPISRYRSAQKVEEIRSRIRDMVDRRTSYAAMARELGH |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.076968 | 0.0 | 0.376240 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0510500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0014860 | RBH | 0.0 | 1.081256 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0015000 | RBH | 0.0 | 1.144581 | 0.303213 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0014900 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0014710 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0014260 | RBH | 0.214109 | 0.0 | 1.570528 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0264000 | RBH | 0.867603 | 3.8605935 | 1.097375 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0014470 | RBH | 0.081137 | 0.000000 | 0.146166 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0293800 | RBH | 0.8510695 | 4.6236745 | 2.2949165 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0014600 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0014790 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0014750 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0014650 | RBH | 0.000000 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0014800 | RBH | 0.000000 | 3.172504 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G014710 | RBH | 0.118546 | 0.227688 | 0.330129 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0014490 | RBH | 0.456535 | 1.657467 | 1.443658 |
