Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_12g0435000 | OGI:12038630 | 3/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr12:14219584-14220921 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCACACATGCATTGGGATCCCCTCAATGCATACTCGTGCTCGGTACCGGAACCTTGCCTCGACGCCGTGCAGGCTTTCGTCCCAAGGACGAAAAACATACACCCTCCCGGAAGCCGTGGCAAGTCTTGGCTGGCGAAGTATTGCGTCTCGATCACCCTGGTTGGAGCAAGTGATGAAGAAGTCTTCTGGGTGGAACTTGGTGAATTGGATGTCAGCTCTTCTGATGTTGAAGGCTGAGGGGACGTCATCTGCAAACGTGTTGAGCTCGACCCTTCCTTCTTGGGCACCCACTTGCCATGCCACCAAGGAATGGGCCGAGAAGCGTTCCCGGTTCCTCTCGATCTCCCCTGTGGCCGAGATCACCACCGAGTCGAGGAGGGGACGAGCTGTGAGGTCGTCCATGATCGGGGACTTGGGAGGGGATGGAAACGATCGTGGGGGAAAACAAAGAGGAGCAAGAGCAGGAAAAGCTTCAGTGTGAGTCTTCAGAGGAGGCAAGGTGGACTTATAGGCAAACTTCTTGCTACAGCTGGAAGCCAGATGACCAAATTTTAAGCAGCGCCAACATCGAAACGGCTCCCTGCAGTCGACGATCTTATGCTTTGTACTCAAACAACGGAAACACTTGCCTTCCATGTGTTGAAGAAATCTTGCTTTTCTTGAATGCATTTGCTCCAGGTTGTTTGGTGTAGTGAATGCGGAGTGGTTTCTCCACCTGCGTTTTCCTTTGACCTCTTTCCAAGGATTCTCTCCAACTTGAATGTCTCCTGTACCTTGCGCTGATGCAGAGAGATTTTGGGTAGACAAATCGAGCAGACGTCCACTCTGCAGGATCCTTATGTCCTTTGCTACTGCCCCTGAAAATCTTGAGGGAGGCTGCACTGCAATGAAATCTGAAGACTTGGCAGCTGGAGGTTGAGGAGGAGCAGTAACTACATCGGAGTAAAGACGCTTGAATCCCGGCAGTTCACCTTTCGGCGAACCTTGACATCGAGAAGACAGGCGAGGATTTGGAGCAGAACTCGAATCCAGCATCGGATTCTGCAGATCTGGCGAGGATACCGCAGACCGGAAAGGGCAGCCCGTCCCCGGAACCCGATATCTTCTGCTGACGAAAGCTGGATCTGAAGCAGGGACGCCCAGGCTAGGAAGAGTAGGGGGCTGACGGGAAGGACCAACAGGAGGGAAGAACTCGAGGGTTGGAGAGGCTAGGGAAGCTGGTGGATCTGGGGGTAGGGGAAGAAGCGGTGGATTTGGAGAAGGGCGAAGCCTATGGTGACGGGGGTGAGTGTCTGGGCTTAGAGACCTAGCCAGCGATGCTCCAGAGAAAGGCGACAT
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| CDS seq | ATGTCGCCTTTCTCTGGAGCATCGCTGGCTAGGTCTCTAAGCCCAGACACTCACCCCCGTCACCATAGGCTTCGCCCTTCTCCAAATCCACCGCTTCTTCCCCTACCCCCAGATCCACCAGCTTCCCTAGCCTCTCCAACCCTCGAGTTCTTCCCTCCTGTTGGTCCTTCCCGTCAGCCCCCTACTCTTCCTAGCCTGGGCGTCCCTGCTTCAGATCCAGCTTTCGTCAGCAGAAGATATCGGGTTCCGGGGACGGGCTGCCCTTTCCGGTCTGCGGTATCCTCGCCAGATCTGCAGAATCCGATGCTGGATTCGAGTTCTGCTCCAAATCCTCGCCTGTCTTCTCGATGTCAAGGTTCGCCGAAAGGTGAACTGCCGGGATTCAAGCGTCTTTACTCCGATGTAGTTACTGCTCCTCCTCAACCTCCAGCTGCCAAGTCTTCAGATTTCATTGCAGTGCAGCCTCCCTCAAGATTTTCAGGGGCAGTAGCAAAGGACATAAGGATCCTGCAGAGTGGACGTCTGCTCGATTTGTCTACCCAAAATCTCTCTGCATCAGCGCAAGGTACAGGAGACATTCAAGTTGGAGAGAATCCTTGGAAAGAGGTCAAAGGAAAACGCAGGTGGAGAAACCACTCCGCATTCACTACACCAAACAACCTGGAGCAAATGCATTCAAGAAAAGCAAGATTTCTTCAACACATGGAAGGCAAGTGTTTCCGTTGTTTGAGTACAAAGCATAAGATCGTCGACTGCAGGGAGCCGTTTCGATGTTGGCGCTGCTTAAAATTTGGTCATCTGGCTTCCAGCTGTAGCAAGAAGTTTGCCTATAAGTCCACCTTGCCTCCTCTGAAGACTCACACTGAAGCTTTTCCTGCTCTTGCTCCTCTTTGTTTTCCCCCACGATCGTTTCCATCCCCTCCCAAGTCCCCGATCATGGACGACCTCACAGCTCGTCCCCTCCTCGACTCGGTGGTGATCTCGGCCACAGGGGAGATCGAGAGGAACCGGGAACGCTTCTCGGCCCATTCCTTGGTGGCATGGCAAGTGGGTGCCCAAGAAGGAAGGGTCGAGCTCAACACGTTTGCAGATGACGTCCCCTCAGCCTTCAACATCAGAAGAGCTGACATCCAATTCACCAAGTTCCACCCAGAAGACTTCTTCATCACTTGCTCCAACCAGGGTGATCGAGACGCAATACTTCGCCAGCCAAGACTTGCCACGGCTTCCGGGAGGGTGTATGTTTTTCGTCCTTGGGACGAAAGCCTGCACGGCGTCGAGGCAAGGTTCCGGTACCGAGCACGAGTATGCATTGAGGGGATCCCAATGCATGTGTGA
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| Protein seq | MSPFSGASLARSLSPDTHPRHHRLRPSPNPPLLPLPPDPPASLASPTLEFFPPVGPSRQPPTLPSLGVPASDPAFVSRRYRVPGTGCPFRSAVSSPDLQNPMLDSSSAPNPRLSSRCQGSPKGELPGFKRLYSDVVTAPPQPPAAKSSDFIAVQPPSRFSGAVAKDIRILQSGRLLDLSTQNLSASAQGTGDIQVGENPWKEVKGKRRWRNHSAFTTPNNLEQMHSRKARFLQHMEGKCFRCLSTKHKIVDCREPFRCWRCLKFGHLASSCSKKFAYKSTLPPLKTHTEAFPALAPLCFPPRSFPSPPKSPIMDDLTARPLLDSVVISATGEIERNRERFSAHSLVAWQVGAQEGRVELNTFADDVPSAFNIRRADIQFTKFHPEDFFITCSNQGDRDAILRQPRLATASGRVYVFRPWDESLHGVEARFRYRARVCIEGIPMHV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0435000 | OsNip_12t0435000-00 | Chr12 | 14219584 | 14220921 | - | RAP2018-11-26 | ||
| CDS seq | ATGTCGCCTTTCTCTGGAGCATCGCTGGCTAGGTCTCTAAGCCCAGACACTCACCCCCGTCACCATAGGCTTCGCCCTTCTCCAAATCCACCGCTTCTTCCCCTACCCCCAGATCCACCAGCTTCCCTAGCCTCTCCAACCCTCGAGTTCTTCCCTCCTGTTGGTCCTTCCCGTCAGCCCCCTACTCTTCCTAGCCTGGGCGTCCCTGCTTCAGATCCAGCTTTCGTCAGCAGAAGATATCGGGTTCCGGGGACGGGCTGCCCTTTCCGGTCTGCGGTATCCTCGCCAGATCTGCAGAATCCGATGCTGGATTCGAGTTCTGCTCCAAATCCTCGCCTGTCTTCTCGATGTCAAGGTTCGCCGAAAGGTGAACTGCCGGGATTCAAGCGTCTTTACTCCGATGTAGTTACTGCTCCTCCTCAACCTCCAGCTGCCAAGTCTTCAGATTTCATTGCAGTGCAGCCTCCCTCAAGATTTTCAGGGGCAGTAGCAAAGGACATAAGGATCCTGCAGAGTGGACGTCTGCTCGATTTGTCTACCCAAAATCTCTCTGCATCAGCGCAAGGTACAGGAGACATTCAAGTTGGAGAGAATCCTTGGAAAGAGGTCAAAGGAAAACGCAGGTGGAGAAACCACTCCGCATTCACTACACCAAACAACCTGGAGCAAATGCATTCAAGAAAAGCAAGATTTCTTCAACACATGGAAGGCAAGTGTTTCCGTTGTTTGAGTACAAAGCATAAGATCGTCGACTGCAGGGAGCCGTTTCGATGTTGGCGCTGCTTAAAATTTGGTCATCTGGCTTCCAGCTGTAGCAAGAAGTTTGCCTATAAGTCCACCTTGCCTCCTCTGAAGACTCACACTGAAGCTTTTCCTGCTCTTGCTCCTCTTTGTTTTCCCCCACGATCGTTTCCATCCCCTCCCAAGTCCCCGATCATGGACGACCTCACAGCTCGTCCCCTCCTCGACTCGGTGGTGATCTCGGCCACAGGGGAGATCGAGAGGAACCGGGAACGCTTCTCGGCCCATTCCTTGGTGGCATGGCAAGTGGGTGCCCAAGAAGGAAGGGTCGAGCTCAACACGTTTGCAGATGACGTCCCCTCAGCCTTCAACATCAGAAGAGCTGACATCCAATTCACCAAGTTCCACCCAGAAGACTTCTTCATCACTTGCTCCAACCAGGGTGATCGAGACGCAATACTTCGCCAGCCAAGACTTGCCACGGCTTCCGGGAGGGTGTATGTTTTTCGTCCTTGGGACGAAAGCCTGCACGGCGTCGAGGCAAGGTTCCGGTACCGAGCACGAGTATGCATTGAGGGGATCCCAATGCATGTGTGA
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| Protein seq | MSPFSGASLARSLSPDTHPRHHRLRPSPNPPLLPLPPDPPASLASPTLEFFPPVGPSRQPPTLPSLGVPASDPAFVSRRYRVPGTGCPFRSAVSSPDLQNPMLDSSSAPNPRLSSRCQGSPKGELPGFKRLYSDVVTAPPQPPAAKSSDFIAVQPPSRFSGAVAKDIRILQSGRLLDLSTQNLSASAQGTGDIQVGENPWKEVKGKRRWRNHSAFTTPNNLEQMHSRKARFLQHMEGKCFRCLSTKHKIVDCREPFRCWRCLKFGHLASSCSKKFAYKSTLPPLKTHTEAFPALAPLCFPPRSFPSPPKSPIMDDLTARPLLDSVVISATGEIERNRERFSAHSLVAWQVGAQEGRVELNTFADDVPSAFNIRRADIQFTKFHPEDFFITCSNQGDRDAILRQPRLATASGRVYVFRPWDESLHGVEARFRYRARVCIEGIPMHV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g24790 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0435000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0008320 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0008450 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0008480 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0013790 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0013440 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0197100 | RBH | 0 | 0.013145 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0013600 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0220900 | RBH | 1.9535935 | 3.8863515 | 8.047163 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0013910 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0013760 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0008330 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0014980 | RBH | 0.0 | 0.0 | 0.0 |
