Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_12g0416900 | OGI:12035870 | 3/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr12:12868201-12870306 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TACCCATCCCCAGCCTCCCCCACGCACGCCTCCAATCGCGCCGCCGCTGCTCCCCTCCTCCCGTCGCGCCGCTAGTCCCCTCCTCCCGTCGCGCCGCCAGCCCTCCCCATCTCACCGCTGCTCCCCTCCCATCGCGCTGCGCTCCCTGCCTCCCGTAGCACCTCCGCCAGTCCCCATCGCGCCGCCGCATCGCTCCACCCATCGCATCAACCCTGCAGCTCTCCAGGTCAGGAGGAATAGATGTCCCCTTCGGCCCTGTCAATTCCACCACCACTCCGTGACTCCTAGGGCTCGTAGCTCCAGGAACCAGCGCCCACGCACCCTCCCACGCTCGCGTGTCCACTCCGCTGTCACTCTTCTTGGTATCGATTCTTTACCCATGCCTCATTGATGCAATTTGCTTTCTTGCGTTTTCTGTTCTTGCGTGTACGTTCTTGGATTTCTGTTACATTTGTATGGTGGTTTGATGTGTCACGATTGGGAGTAATTGCTGAGGTTGGTGATAATATGGGATAAATCTGGTATTGCTTGGTTCAATTCGGGGTGGTGCTAATGTTCTGTTCCTAAATTACAAATTACAGTGGTTTGATGGCATGTAGATTTAGAAACAACTGTATTTTTGAATTTTAGGCTGTATCCACCACAGCCACTAATATGTTGCCGCAGTCTATGAGCTGCTGCCACCACTGATTTCCACTTTGCCAAGGAACCAGTAGGGTGGATAGGTGGACAGCTGCTCACCTCTTGGTCGACAGCTCCTCCATTGCGTGTGTCTTGCAAAAAGGGGATTTTTATAGCCGTATTGTGAATCTGTGTGTATGTTTGTGGGTTTCTGTCCATTGAGATATATTAGGTGATATTTTTGTGTAAATAACAATTGATTTCCCTTTTGCTACTGGTGATATATATATATATATATATATATATATATATATATATATATATATATATATATTTTTACGTTTTGGAGATGAGAAATTTCGCTCTTTGTTCTGGATGCAGCTATCCCTTGGGCTTGAGTGCTGTTCGAATGAACCAGTTGGTGTCGCGGAAGTACATGGGCTGAATTTATTAACCAAGGTATTTGGATCATTTGATATTGATATTTAGAATTTTCCAGGGTGTACAAGTGGCAGTGAATATAGCACTCTCTGAATATTAAATTTTGAGGCAGTTTACAATGAAATATTGTAGGTCATCAACAAGGCAAGCATAAGAGGACCAAGGGGATCTCCATGGTAGAAGTTTGAACTTTACTTGAGGAAAACAGCCATATAGCTGGCAACAAGCAAACACCAGGTTAGTAATGAGATGCTTTCTATATATATTATGTTCTACTATTGAATATTATCTGCATGCTTGGTATTGAATGCTTGGGAAAAAAATTATAGTTGTTTGAATAGGCTTCATATTTTGTGTGATGAAAATAATTGATTGCAGCAGTAGTGGTTATTTTGGCAAGATTGCCATAATTTTAATTGGGAACTATGTTTACTGAATTGCCTGAATGTGAATGTTGTATATTTGCAATTGTTTAAACACTTAAAACATGCATTATGGGTCTGTATAGCTGATCTGTGAAAATTAACAGAGGTGCACCATGGATAAACAGTGGATGGATAAGCCTAGGTACAACAAATACTTTCAATTATTTTAGGTCTCTATGGTCCATACCCTTTTTTTATCTAACCTGGCCACTCATGGATGTATTGCACGTAGGCACTCTAGAGAATATTCAGAAGGGCTGGACATATTCCTACAACATGAATTTAGTTCAGCAGTAGGCAACAAAATACAATGCCCCTGTAAAAAATGTGCTGGTTCATTCTGGAGAGATGAAAGCGAAGTTCATGAGCATTTGATATGTGAGGGCTTTCTACGAGGGTACAAACCATTGATGTTTCATGGAGAAGGTAGCTCCTTTGTGAATTCTGCTGAGTATGATGAGGTTGGGGATGTGGAGTCAAGTGAACATGATGACATCTTTGATTTGCTTCGAGACTTGGCATGTGGCTTAGATGATAGGGGGGAATTTGAGGATGAGGGTAATTCAGATGTAACAAATGAAGATCTGAATGCTCTTAAAATGCTGTCAGATGATTATGG
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| CDS seq | ATGGATAAACAGTGGATGGATAAGCCTAGGCACTCTAGAGAATATTCAGAAGGGCTGGACATATTCCTACAACATGAATTTAGTTCAGCAGTAGGCAACAAAATACAATGCCCCTGTAAAAAATGTGCTGGTTCATTCTGGAGAGATGAAAGCGAAGTTCATGAGCATTTGATATGTGAGGGCTTTCTACGAGGGTACAAACCATTGATGTTTCATGGAGAAGGTAGCTCCTTTGTGAATTCTGCTGAGTATGATGAGGTTGGGGATGTGGAGTCAAGTGAACATGATGACATCTTTGATTTGCTTCGAGACTTGGCATGTGGCTTAGATGATAGGGGGGAATTTGAGGATGAGGGTAATTCAGATGTAACAAATGAAGATCTGAATGCTCTTAAAATGCTGTCAGATGATTATGG
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| Protein seq | MDKQWMDKPRHSREYSEGLDIFLQHEFSSAVGNKIQCPCKKCAGSFWRDESEVHEHLICEGFLRGYKPLMFHGEGSSFVNSAEYDEVGDVESSEHDDIFDLLRDLACGLDDRGEFEDEGNSDVTNEDLNALKMLSDDY |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0416900 | OsNip_12t0416900-01 | Chr12 | 12868201 | 12870306 | + | RAP2018-11-26 | ||
| CDS seq | ATGGATAAACAGTGGATGGATAAGCCTAGGCACTCTAGAGAATATTCAGAAGGGCTGGACATATTCCTACAACATGAATTTAGTTCAGCAGTAGGCAACAAAATACAATGCCCCTGTAAAAAATGTGCTGGTTCATTCTGGAGAGATGAAAGCGAAGTTCATGAGCATTTGATATGTGAGGGCTTTCTACGAGGGTACAAACCATTGATGTTTCATGGAGAAGGTAGCTCCTTTGTGAATTCTGCTGAGTATGATGAGGTTGGGGATGTGGAGTCAAGTGAACATGATGACATCTTTGATTTGCTTCGAGACTTGGCATGTGGCTTAGATGATAGGGGGGAATTTGAGGATGAGGGTAATTCAGATGTAACAAATGAAGATCTGAATGCTCTTAAAATGCTGTCAGATGATTATGG
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| Protein seq | MDKQWMDKPRHSREYSEGLDIFLQHEFSSAVGNKIQCPCKKCAGSFWRDESEVHEHLICEGFLRGYKPLMFHGEGSSFVNSAEYDEVGDVESSEHDDIFDLLRDLACGLDDRGEFEDEGNSDVTNEDLNALKMLSDDY |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 5.126819 | 3.334583 | 3.740983 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0195175 | RBH | 1.163751 | 2.264524 | 5.090445 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g23250 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0416900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0229200 | SBH | 0.003947 | 0.057283 | 0.005448 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0251800 | SBH | 2.6271475 | 5.8382025 | 13.607565 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
