Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_12g0278800 | OGI:12027890 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr12:10436107-10444026 | ||||||||
| Gene Symbol | C3H65, OsC3H65, DLN256, OsDLN256 | ||||||||||
| DNA seq | CATGGAAGATGTAAAACTGCAATATGGGATTCAGCCCGACGCCATAGTTGTATACTAAACGCGACGATGCTGTACAATGTAAAGAGTTTTGACAGGTTTTGTTTAATTTCATGAATTCCAGCGGCAATGTACCCAGCTTGATGCAACTTCGTTGCCACTTTCCAAGCCAGATCTCTCCCACTGTCAGTGAGTGAACCCACGTACAGCTTTCAGCTACGCTATCTTACAAGTGAAGTTATTACAAGCATCACGGCGACGATGAAAAATCGCTCGTGCCTGCTTCAGAGAGTGTAGTTTCCTGGAGTTGGGTATTGAGCAGGGAGGAGAGGAGGTCCCGCTGCAGGTACAGGGCTAAAATTGAAGGGGTGATTGTATGCGCAAGCTGGCCCAAATTTGCAGACCCCATAGCGACCATAGTATGTGCACACAGGCTGATCCTGAAACAAATATGGCAAGAAATAAAACATTAAAAAAATAGCGATCAAGCATTATCTGATTTAGATTGCAAATGATGGGGTCAGAAGAGGTAAACAAAAATAAATCATAAGTTATTAGCATAGAGTTGTCAGTTAACAACAGCTGCAACCATCAGGAATAGAGTTTATAGCTTAAACTAAAGTGAGTTAACTCTATTCTTTTAGTCTAAAATATGTACAAAATGTCTTAGCTATAATAATCTTAATCTAACCCCACCTCCCAACTTAAGAATTTTTTGAACTAGAGATACCAAACCTGGGGTTGAAGCTGTAACAAACAGTCCCAACAGAGCTAAATGAATGATATCACCTAAAATTGAGGAAATAAATGGAAGAAGGAACATACAGGTTTTATAGGCAAGCCAAGAGGGCTAAGAGCTCCTGCTGGAGGCACCGGTGACCTTGGGTGGTGATATTTGCACTTCATCCTAAATTTGCAAAAACCACTCTTCACAAAATGCTGACATTCAGGTTGGCCAGGTCTCTCTGGGTATTCCTCGGAAGGAACCTGCTGATGTCCAGGTATTTCTGGTGCCTTGTACATAGGATGATTTATAGGAGCAGCTGGAAAATGTTGGAAAGGGACTCCAGGAGGATAATATGGATTCAACGGAACCTGAAAAGGAAATAGTTACACGTGAAATTGTTACCCAAGATAATGTATCAATTGTAAAGAAAGGTGCTTTCTCGAAGAAGACATTTGAAGGATAAACTGGAGAACTGGACTAATAGAAACATAATTCCTATGTACTTGTCCGAGAAATGGCAGCCAACATATAAAATCTGATCACATTCCAATACATAAAAGTAACTCGACATGGAAATGTATTTGGCAAATTTGTATCAAGCATTCAAATGCACCTCATACATCCTATTTTCAATATTGTTTTGCAACATATGATTTAATTATGTAACAATCAAAAAACATACGTTAAGGACCACAATTACAAGTAAAAAGGAATGGAGGGTACTATCTTCCTTGATTTCAGCCAGGAAATTTCTAGTTAATATTGGAAAAAGTAATAATAGCCAATTTCTAATGCAATTTTACAAATTTCAATTAGTTCTTATAAGAAAGTCGACAGAAAGAAGTCAGCAAAACATGCCAATATGCTCAATTTTCACTTCAACGAAAAGCAACTTGCAATATTTACTCCGTCCATCTGAGATGGAGCGGAGAGAACATTTTGGCATCATAGGTGAATCTTTAATTTACCTGATGATACCCATTCCATTCAGGAGGTGGATACATTCCTTGAGGAGGAAGCATCCCTGCACTGTACGATGGAGATGGAGCTATAAACGGAACATGATGCTCATTCACTGTTCTCTGATCGGGCCAAATTGAAGCATTTGGCTGAGACGATGATCCTTGAACATCTTGCTGTGGAGCATCCCCATTCTCATGCTCCAACTGTGGATCTTTAGAAGCAACATTAGAAGGATCAGGATGGTGAAACTTGCAGTTAGTGGCGTACTTGCAGCTCCCAGTACGCATGTAGTAGGGACACTCCTTTTCCCCCTGCAAGATTAACACCACAATTGTATAGAAAAGGAATATTTAAGAAATGACTATTAATATCATGAACATATTTATTGCACACTGCTGTAAAAATTAAGTGCAATCATGAAAATCACTCTGGTTTGGCACCAAGTCAGCACAACTCTGAAAAGATCTTAGGTACAATATTTGTCCTGTGGTAATTATTTTAGTTTGCAAACCTATGGATCAGTTTACAGGAGTAAAAGGAGAGTTATAGTAGCATGTACTCTTTTCTCATCAAATTTACAATTTGACAAAACTTACTTTTTGCAAACATAACAATTAATAAATTTATAGATATATTGACAGCTTTCTAGTAGGTTTCATTCCATTAACCAAACAATTGTCCAAGCCTACCATACTTTAGTTTCTGAGGTTTACTTGTCAACTTACGAACTTATAATACCCAAACTGAAGAGGTTTACATGATCACAGTCACACCCAATGGTGGATACAGAATAAAAATGACAAGGTATCCTGTAGATATTAGAACATGTCTAATACTCTAATTATCGAGAATTGTTTTAGTAAATAGCAATGGTTAAAACAACTAACAATAGAAATCCCAATCAGTGTCCAGTGCACTGGCATATGATTAGATCAGCAGTAGTTGCTCTATCCCTGATTGAACCTAGTTATTGATTTATGTGATTGCATGAGGCATCCCATAACACCAGTACAATGTATGGATCACACATACATAAATAAAGCCCACAGATAGCCTGATAGGGTAACCATAAACTCAACTAGAGTATTTAAGCTTGACAAACAAATGAAAGACTTACTGGACGAAGTGGAAGACCGAGAAAGTTCAGGTCAACCTTTTCAGCGTCTGTTTTCCCTTCTTTTCCATCACGGTGGAGGTATTTACAAGCTTTACCAAATTTGCATCCTCCAGGTGTTGAATAATACTGAAAAGGGTTAAAAAAAAGACTCAAGGGACAAGGAATATCTTTGTAATGAAAGATCTACAAAATTGGCGGCCTTAGATTACAATGGGGTGCTCGAGTGTGTACAGAAAACTATGGTAGCATGCTAGGATCAACTATGGTGACAAAACAAAATTAACTTACAGAAATATAGCAATACAATGAAGAAATTTACTAAAGAATATGTAAAAGAACACTAGAGTTGATATAAATAATTTGTTGTACGTTCATGGCATGTTACCAAAGGCCTGTTTGGGGGAGCTTTAGATTCTGAGAAGCAGCTGGTGAGAATCTGGCTTATAGTTCATTTTCTGGATTCTACAACTACAGCTTCGCAGAATCTAAATGAAAAGTTGGACTGTTTGGGGGAGCTTTTGATTCTGGAAGAAGCTACAGCTGTCAAAAACTCCCGAAACAAGCCCTAAAACTTATGTTCTGGTGTAGCAACCTATGTTATCAAGGCATCATCTAAGTGACGCCATGGCATCCAGGTGGCAACAAGAAGACAAAATGTCCCTTCACCTAAGTCCCACCAGTTAAGTTAGCACCTAAATGAACTGGGCACCAGAACCACCATGATTGGTCCAAGGGTAAGAACCCCTTCAATTTATTGGTTCATGGAATTGGAATGGTTGGTTTCAGGGAATAGAAGAGAGAAAACAATTGTGAAATTTTAGGGAGTTGAGAAACATGCAGAGCAGAGGAACACTAGCCACTGCAAGCGCCTTTCTACAATCACCCATTCACCCTTGCGACCAGCTCAGTTGTTCTTCCACTTCTGCTACTTCCTCTGGCTCACACTCTTGTAAGCTCTTCCTCCGCCTCTTCTCCACTATTCCTCCATTGCATGCTATGACTCTGTTGTGCTCTTCCTCTGCCTCTTCATCTGCCTCATGATTTGCTATGCTGATCTCCTACATGCCGTCCTCTGCTTAGCTGGTTTGCTTTGCTTTGCTTTAAAATTTGGCTCTCATGTTGCTCTGATCTCCGCTCTGTGCTGCTATTCTACTCTGCTGAATAGCTCACCTTGATAACACATAGGTTGTTAGGCTATCAGAGACACCAGTGACCAGACACAGGATTCAGCCATCCATTCCATTGGTTGACTGCTCCAGACCACAAGCACATGTACAATGCATGGTATATGGGGTTGTTTAATGCCCCCAAATAAGCTGTGAAGATTAACAGATTTACTGATCCCAAATTATTTTCTCCAAGTATAAAACCAAAAAGAGTAATGCAGCTTCATTACTTTACTAAAATGTACCCCCTCTGGTTCCATAATTCTTCTTGTTTGGGACAAGATTGAGGTCAGACTATCAGAACTTTGACTATCAATAGCTTTAAAAATATTTTAGTTTGAAGGCATTAGAACATGTATAGATTAGTCTTAAAAAGTTAAATATTTATTTATTGTACATATTATAGTAGAAAATTCATAATCAAAGATATGTTTTGGAGACCATGTCGTTGTCCAAAACAAGAAGAATTATGGAATCGGATGGAGTGGTCAATAAGATAAACCACATGCTCAACCAGGTTATTCAGACAAGCCTAATCACCTTACCCCTAAACCTTCGATTTATAAAATCTACAGAACATTTAGGACGGATTTTCAAGGAACTGAAAGTCTGTACATCATAATATCCAGTACAAGGAATTTTCAGCTGTTAATATTACATGGCCCCTATGCTTTAAGAGCAAAATTGATCAAAGACTTATCGATAGGGTGAAAGATCACTAACAAACCTTGCATTCCTCCTGGGAACTACCTTCTGAAATAAATTCCTTCCTTTTCTCTTTGGCAACCTTCAGTACCTCGCAGAAAAAGAAGATAGTATAATCAGGAGATAATAAAATGAAGACTTTATACAAAATACAGATCAACCAAAAGGTTATAACATCCTAGATAAAACCAGAATTTTGCATGACAATGAGGTTTGTTATCATGTAAGTACAGCAAATATATAAATTTGTTAGTTCAGACTCAGTTACAGGAGGCATGAAGGACGCAATTTGCTACAAGAAACCCAGTATATATAGATATGAAGGTATGGGGAAAAAAGAAAATCCCATAATACAACATTATAAGGCAGATAAAAAAATTTAACACAAACAATGGACATTTTACAAAAGGATGACCAGCTGACCATCAAGGTGCTGCCAAAGGGGCTTCAATAATATAAAAATTGCGAACATTTTAATATATTTCATCTAACTTCATCAAACAAATTAATTTCTCAATATCCTCCACAATCAACCAACAAAAGATATGACAATTTTGAAAATTCAAACTACATTTCTCAAGCAACTCAAAAGAGTTCATTCATATTGTATAATGCCAATCACACAGCAGCAACAGCTAACCTTAAGTTCCTTTGGCTCCACTCTTCCCTTCTTCACATCGATAATCTGCAACAAAGAAAAACAGAACACATCAAACATTGTGATACTTTCAATTTCTAGCTATGAATGCATGTATAAAATTGGAATTGCTTTCACAGGTTGAATGGCGTAAAATGTAAATCACCTCCATAACAATCACACCTCACTAAGAGGCAAGTATCTTGAGTCTCAACCATTAATAGATACATCTCAAATAAATTACTTGATATGCTGAAAGGAAATTCTGGTTGCTAACCTCATAAGAATATTTCTTAAAGTTTTCTAAGTTAGACGCACTCCCCTTGTCAGCAAATCCCTACGAGAAAATAAGATATTAACATTAGATAATTATTATAGAAAAGGAAAAAAATAAATAAATTGTGCATCTAATAGTTAATTCTGCAAACGTGCTTGTAGCATGGTGGTAATGCCTTCCAGTGGAAAGCTACTGACCAGGGTTCAAATCCTGGTCTCGCACAAAAGAAAAGGTCACTTGTTGGTTCCCCCAAAAACATGGGTAGAATCGCCAAATGGAAGGCGTGCCCTCGTGTGTGGGGTAGGGACCTCAAAGCATGGGTTAAGGCCCAATCCATAGGGAGCGACTCATCGTGTAGGGGGGACAAGCTTTTGTGGCCTTTCTCAGCCCCAGTTTTGGGTGCCTCTTCTTAATTGAAAGACCTCAGGGGAGGTCTTTCCCCTTGGGGCCAAGTTTTTCTAATAGCTATCTGAACTTCACAGTTCAAGGTGGTTGATTCATCACCGAAATTAGCGACACCTAGGTATGCCAGTATGGCATGCCGTGCTTTTCAGGACAACCATTTTGGTGCAATGCCTATGCAGTTACATCCAAACTAGTCAATTCATGATGGTGGACACAGATTTGTACAATATTAAAAATATTGCCGAAGTGTCAACGTGCAAGGTGGTGTACTACAACACAGCTTTTGAAACCATTTTCAACTGCTTTTCAATCACTTGGACACAGTACAGACACTAGCTTTAGTCATCAATGAATTCGGCGTTACTCCTTCACATTCAATTATAGAATAAAGTAAAGATGACGCACCAAAGAATCAACTTCAGGTGAAATATCTGGAACATAGCTTCCGTATTCCTCTTTTGGAGCCTGCTGGAAAGTTAAATTCAATAACAGAAAGGCGAATTAAATTTTACTGAAGAAAAAAAATCGTTATTTGCTATCAAGTGTTAACTTAATATCTTATCCACCATCCAAATTTGCCGTTCCCTTGTTTTCCACTCTTTAATTTTTGTCCACCCTTATTGGCCACTTCCATCAACTCCGTGTAAGCTAAGTGTTTAACACTTGTTTGTCTTTTAAACATTTAATAGGCCACACATCTAGTTTATAGCAGCATGGATATGGTAGAACCATGAATATCCACCGCGAAAACACGACATATGGTGACTGAAATTTATGTGAAAATTTAGCAATTTATTAGACCTCCATAGCATCAAAACTAATTGCATTCAGATCACACAACTTATATGAACAACATGGCAACATAAGCTCCGTGCACTCCAATTATTCATCATATTAGTTTCATTTACCCGCTTTCAAGACAAAAAAAAAACAGTGTATTTGCATGCTGCAACATAATAATACAATAGAAAAGACAACAAGCCCAAGCAACGTGCCAAATCAAGACAGACATGCATGCGCTGAATAGCTGAAGTAAAACACGAGGCATAAAAAGCGCTAATCACCTGCTCATCATCAGGCGAGGAGGCTTTGTTACTGCTGCTGTTGCTCCCGCCGCTGCCACTACCACCGTTACTACCTTTCACCTGTACACACGCATGCAGAGACAAACAAACAAAAACAACGCGAAGTCACGGACACATGAGAAAAACCCACTCACAAAAGTCGTCTCCGTCTCACCCATCCGCAAACCACCAAACCCCAACTCGCCATCACCAAAACCAGATCAAAACGCCCTCATAAAAAAATTAAAAAAACCCCCTAAAATCGCGCAAAATAATTAAACAACTAGCTCCAACACCAATCCACCCACCCTACTCTTCTTCTTCCTCGCCGGATGATTGAACTTGCACTTCATCCCAAAGCGGCAGCTCCCGAACTTGACGTAGTAGGTGCAGTCCGGCTCCCCGGGTCGCCTCGGGAACCGCGGCCTCGAATCCGCCGCAGCACCCTCCACCCCCACCGCCGCCGCCACCTCACCCGGCAGCTTCTCACCACCGGAGACCTCATCTCCAGCAACAACAACAGGGCCATCCTCCCAGCCGGTGGGCTTGGGAAGCAGCAGCTCCTCCCCCTGATCGGCGATGGCGAGTCCGGCGAGCTGCTCCTCCACCTCCACCTCGACCTCCACCTCGTCCTCCCCGGCGGCGGGGGCGGCGGAGGAAGGGGAGATCGAACCGATCGGCGTGGCGCCGGGGTCCGATTTGGGCGGGGCCCTCGCGTCGGCGTCCGCCATTGGCCTCTCCTCGGAGGTGGAGACTGGAGAGAGAGAGAGGAGAGAGAAGGGATGGTGATGGAGACGAGAGCAGGTGGGGGAAGAAGCGAAGCGAAGCAACGAAAGTGGGGAAAAACCCTAGAGAGAGAAAG
More
|
||||||||||
| CDS seq | ATGGCGGACGCCGACGCGAGGGCCCCGCCCAAATCGGACCCCGGCGCCACGCCGATCGGTTCGATCTCCCCTTCCTCCGCCGCCCCCGCCGCCGGGGAGGACGAGGTGGAGGTCGAGGTGGAGGTGGAGGAGCAGCTCGCCGGACTCGCCATCGCCGATCAGGGGGAGGAGCTGCTGCTTCCCAAGCCCACCGGCTGGGAGGATGGCCCTGTTGTTGTTGCTGGAGATGAGGTCTCCGGTGGTGAGAAGCTGCCGGGTGAGGTGGCGGCGGCGGTGGGGGTGGAGGGTGCTGCGGCGGATTCGAGGCCGCGGTTCCCGAGGCGACCCGGGGAGCCGGACTGCACCTACTACGTCAAGTTCGGGAGCTGCCGCTTTGGGATGAAGTGCAAGTTCAATCATCCGGCGAGGAAGAAGAAGAGTAGGGTGAAAGGTAGTAACGGTGGTAGTGGCAGCGGCGGGAGCAACAGCAGCAGTAACAAAGCCTCCTCGCCTGATGATGAGCAGCAGGCTCCAAAAGAGGAATACGGAAGCTATGTTCCAGATATTTCACCTGAAGTTGATTCTTTGGGATTTGCTGACAAGGGGAGTGCGTCTAACTTAGAAAACTTTAAGAAATATTCTTATGAGATTATCGATGTGAAGAAGGGAAGAGTGGAGCCAAAGGAACTTAAGGTTGCCAAAGAGAAAAGGAAGGAATTTATTTCAGAAGGTAGTTCCCAGGAGGAATGCAAGTATTATTCAACACCTGGAGGATGCAAATTTGGTAAAGCTTGTAAATACCTCCACCGTGATGGAAAAGAAGGGAAAACAGACGCTGAAAAGGTTGACCTGAACTTTCTCGGTCTTCCACTTCGTCCAGGGGAAAAGGAGTGTCCCTACTACATGCGTACTGGGAGCTGCAAGTACGCCACTAACTGCAAGTTTCACCATCCTGATCCTTCTAATGTTGCTTCTAAAGATCCACAGTTGGAGCATGAGAATGGGGATGCTCCACAGCAAGATGTTCAAGGATCATCGTCTCAGCCAAATGCTTCAATTTGGCCCGATCAGAGAACAGTGAATGAGCATCATGTTCCGTTTATAGCTCCATCTCCATCGTACAGTGCAGGGATGCTTCCTCCTCAAGGAATGTATCCACCTCCTGAATGGAATGGGTATCATCAGGTTCCGTTGAATCCATATTATCCTCCTGGAGTCCCTTTCCAACATTTTCCAGCTGCTCCTATAAATCATCCTATGTACAAGGCACCAGAAATACCTGGACATCAGCAGGTTCCTTCCGAGGAATACCCAGAGAGACCTGGCCAACCTGAATGTCAGCATTTTGTGAAGAGTGGTTTTTGCAAATTTAGGATGAAGTGCAAATATCACCACCCAAGGTCACCGGTGCCTCCAGCAGGAGCTCTTAGCCCTCTTGGCTTGCCTATAAAACCTGATCAGCCTGTGTGCACATACTATGGTCGCTATGGGGTCTGCAAATTTGGGCCAGCTTGCGCATACAATCACCCCTTCAATTTTAGCCCTGTACCTGCAGCGGGACCTCCTCTCCTCCCTGCTCAATACCCAACTCCAGGAAACTACACTCTCTGA
More
|
||||||||||
| Protein seq | MADADARAPPKSDPGATPIGSISPSSAAPAAGEDEVEVEVEVEEQLAGLAIADQGEELLLPKPTGWEDGPVVVAGDEVSGGEKLPGEVAAAVGVEGAAADSRPRFPRRPGEPDCTYYVKFGSCRFGMKCKFNHPARKKKSRVKGSNGGSGSGGSNSSSNKASSPDDEQQAPKEEYGSYVPDISPEVDSLGFADKGSASNLENFKKYSYEIIDVKKGRVEPKELKVAKEKRKEFISEGSSQEECKYYSTPGGCKFGKACKYLHRDGKEGKTDAEKVDLNFLGLPLRPGEKECPYYMRTGSCKYATNCKFHHPDPSNVASKDPQLEHENGDAPQQDVQGSSSQPNASIWPDQRTVNEHHVPFIAPSPSYSAGMLPPQGMYPPPEWNGYHQVPLNPYYPPGVPFQHFPAAPINHPMYKAPEIPGHQQVPSEEYPERPGQPECQHFVKSGFCKFRMKCKYHHPRSPVPPAGALSPLGLPIKPDQPVCTYYGRYGVCKFGPACAYNHPFNFSPVPAAGPPLLPAQYPTPGNYTL |
||||||||||
| Function | Zinc finger CCCH domain-containing protein 65 [UniProtKB/Swiss-Prot:Q2QTY2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0278800 | OsNip_12t0278800-01 | Chr12 | 10436107 | 10444026 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCGGACGCCGACGCGAGGGCCCCGCCCAAATCGGACCCCGGCGCCACGCCGATCGGTTCGATCTCCCCTTCCTCCGCCGCCCCCGCCGCCGGGGAGGACGAGGTGGAGGTCGAGGTGGAGGTGGAGGAGCAGCTCGCCGGACTCGCCATCGCCGATCAGGGGGAGGAGCTGCTGCTTCCCAAGCCCACCGGCTGGGAGGATGGCCCTGTTGTTGTTGCTGGAGATGAGGTCTCCGGTGGTGAGAAGCTGCCGGGTGAGGTGGCGGCGGCGGTGGGGGTGGAGGGTGCTGCGGCGGATTCGAGGCCGCGGTTCCCGAGGCGACCCGGGGAGCCGGACTGCACCTACTACGTCAAGTTCGGGAGCTGCCGCTTTGGGATGAAGTGCAAGTTCAATCATCCGGCGAGGAAGAAGAAGAGTAGGGTGAAAGGTAGTAACGGTGGTAGTGGCAGCGGCGGGAGCAACAGCAGCAGTAACAAAGCCTCCTCGCCTGATGATGAGCAGCAGGCTCCAAAAGAGGAATACGGAAGCTATGTTCCAGATATTTCACCTGAAGTTGATTCTTTGGGATTTGCTGACAAGGGGAGTGCGTCTAACTTAGAAAACTTTAAGAAATATTCTTATGAGATTATCGATGTGAAGAAGGGAAGAGTGGAGCCAAAGGAACTTAAGGTTGCCAAAGAGAAAAGGAAGGAATTTATTTCAGAAGGTAGTTCCCAGGAGGAATGCAAGTATTATTCAACACCTGGAGGATGCAAATTTGGTAAAGCTTGTAAATACCTCCACCGTGATGGAAAAGAAGGGAAAACAGACGCTGAAAAGGTTGACCTGAACTTTCTCGGTCTTCCACTTCGTCCAGGGGAAAAGGAGTGTCCCTACTACATGCGTACTGGGAGCTGCAAGTACGCCACTAACTGCAAGTTTCACCATCCTGATCCTTCTAATGTTGCTTCTAAAGATCCACAGTTGGAGCATGAGAATGGGGATGCTCCACAGCAAGATGTTCAAGGATCATCGTCTCAGCCAAATGCTTCAATTTGGCCCGATCAGAGAACAGTGAATGAGCATCATGTTCCGTTTATAGCTCCATCTCCATCGTACAGTGCAGGGATGCTTCCTCCTCAAGGAATGTATCCACCTCCTGAATGGAATGGGTATCATCAGGTTCCGTTGAATCCATATTATCCTCCTGGAGTCCCTTTCCAACATTTTCCAGCTGCTCCTATAAATCATCCTATGTACAAGGCACCAGAAATACCTGGACATCAGCAGGTTCCTTCCGAGGAATACCCAGAGAGACCTGGCCAACCTGAATGTCAGCATTTTGTGAAGAGTGGTTTTTGCAAATTTAGGATGAAGTGCAAATATCACCACCCAAGGTCACCGGTGCCTCCAGCAGGAGCTCTTAGCCCTCTTGGCTTGCCTATAAAACCTGATCAGCCTGTGTGCACATACTATGGTCGCTATGGGGTCTGCAAATTTGGGCCAGCTTGCGCATACAATCACCCCTTCAATTTTAGCCCTGTACCTGCAGCGGGACCTCCTCTCCTCCCTGCTCAATACCCAACTCCAGGAAACTACACTCTCTGA
More
|
|||||||
| Protein seq | MADADARAPPKSDPGATPIGSISPSSAAPAAGEDEVEVEVEVEEQLAGLAIADQGEELLLPKPTGWEDGPVVVAGDEVSGGEKLPGEVAAAVGVEGAAADSRPRFPRRPGEPDCTYYVKFGSCRFGMKCKFNHPARKKKSRVKGSNGGSGSGGSNSSSNKASSPDDEQQAPKEEYGSYVPDISPEVDSLGFADKGSASNLENFKKYSYEIIDVKKGRVEPKELKVAKEKRKEFISEGSSQEECKYYSTPGGCKFGKACKYLHRDGKEGKTDAEKVDLNFLGLPLRPGEKECPYYMRTGSCKYATNCKFHHPDPSNVASKDPQLEHENGDAPQQDVQGSSSQPNASIWPDQRTVNEHHVPFIAPSPSYSAGMLPPQGMYPPPEWNGYHQVPLNPYYPPGVPFQHFPAAPINHPMYKAPEIPGHQQVPSEEYPERPGQPECQHFVKSGFCKFRMKCKYHHPRSPVPPAGALSPLGLPIKPDQPVCTYYGRYGVCKFGPACAYNHPFNFSPVPAAGPPLLPAQYPTPGNYTL
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0278800 | OsNip_12t0278800-02 | Chr12 | 10436132 | 10443970 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCGGACGCCGACGCGAGGGCCCCGCCCAAATCGGACCCCGGCGCCACGCCGATCGGTTCGATCTCCCCTTCCTCCGCCGCCCCCGCCGCCGGGGAGGACGAGGTGGAGGTCGAGGTGGAGGTGGAGGAGCAGCTCGCCGGACTCGCCATCGCCGATCAGGGGGAGGAGCTGCTGCTTCCCAAGCCCACCGGCTGGGAGGATGGCCCTGTTGTTGTTGCTGGAGATGAGGTCTCCGGTGGTGAGAAGCTGCCGGGTGAGGTGGCGGCGGCGGTGGGGGTGGAGGGTGCTGCGGCGGATTCGAGGCCGCGGTTCCCGAGGCGACCCGGGGAGCCGGACTGCACCTACTACGTCAAGTTCGGGAGCTGCCGCTTTGGGATGAAGTGCAAGTTCAATCATCCGGCGAGGAAGAAGAAGAGTAGGGTGAAAGGTAGTAACGGTGGTAGTGGCAGCGGCGGGAGCAACAGCAGCAGTAACAAAGCCTCCTCGCCTGATGATGAGCAGGCTCCAAAAGAGGAATACGGAAGCTATGTTCCAGATATTTCACCTGAAGTTGATTCTTTGGGATTTGCTGACAAGGGGAGTGCGTCTAACTTAGAAAACTTTAAGAAATATTCTTATGAGATTATCGATGTGAAGAAGGGAAGAGTGGAGCCAAAGGAACTTAAGGTTGCCAAAGAGAAAAGGAAGGAATTTATTTCAGAAGGTAGTTCCCAGGAGGAATGCAAGTATTATTCAACACCTGGAGGATGCAAATTTGGTAAAGCTTGTAAATACCTCCACCGTGATGGAAAAGAAGGGAAAACAGACGCTGAAAAGGTTGACCTGAACTTTCTCGGTCTTCCACTTCGTCCAGGGGAAAAGGAGTGTCCCTACTACATGCGTACTGGGAGCTGCAAGTACGCCACTAACTGCAAGTTTCACCATCCTGATCCTTCTAATGTTGCTTCTAAAGATCCACAGTTGGAGCATGAGAATGGGGATGCTCCACAGCAAGATGTTCAAGGATCATCGTCTCAGCCAAATGCTTCAATTTGGCCCGATCAGAGAACAGTGAATGAGCATCATGTTCCGTTTATAGCTCCATCTCCATCGTACAGTGCAGGGATGCTTCCTCCTCAAGGAATGTATCCACCTCCTGAATGGAATGGGTATCATCAGGTTCCGTTGAATCCATATTATCCTCCTGGAGTCCCTTTCCAACATTTTCCAGCTGCTCCTATAAATCATCCTATGTACAAGGCACCAGAAATACCTGGACATCAGCAGGTTCCTTCCGAGGAATACCCAGAGAGACCTGGCCAACCTGAATGTCAGCATTTTGTGAAGAGTGGTTTTTGCAAATTTAGGATGAAGTGCAAATATCACCACCCAAGGTCACCGGTGCCTCCAGCAGGAGCTCTTAGCCCTCTTGGCTTGCCTATAAAACCTGATCAGCCTGTGTGCACATACTATGGTCGCTATGGGGTCTGCAAATTTGGGCCAGCTTGCGCATACAATCACCCCTTCAATTTTAGCCCTGTACCTGCAGCGGGACCTCCTCTCCTCCCTGCTCAATACCCAACTCCAGGAAACTACACTCTCTGA
More
|
|||||||
| Protein seq | MADADARAPPKSDPGATPIGSISPSSAAPAAGEDEVEVEVEVEEQLAGLAIADQGEELLLPKPTGWEDGPVVVAGDEVSGGEKLPGEVAAAVGVEGAAADSRPRFPRRPGEPDCTYYVKFGSCRFGMKCKFNHPARKKKSRVKGSNGGSGSGGSNSSSNKASSPDDEQAPKEEYGSYVPDISPEVDSLGFADKGSASNLENFKKYSYEIIDVKKGRVEPKELKVAKEKRKEFISEGSSQEECKYYSTPGGCKFGKACKYLHRDGKEGKTDAEKVDLNFLGLPLRPGEKECPYYMRTGSCKYATNCKFHHPDPSNVASKDPQLEHENGDAPQQDVQGSSSQPNASIWPDQRTVNEHHVPFIAPSPSYSAGMLPPQGMYPPPEWNGYHQVPLNPYYPPGVPFQHFPAAPINHPMYKAPEIPGHQQVPSEEYPERPGQPECQHFVKSGFCKFRMKCKYHHPRSPVPPAGALSPLGLPIKPDQPVCTYYGRYGVCKFGPACAYNHPFNFSPVPAAGPPLLPAQYPTPGNYTL
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0278800 | OsNip_12t0278800-03 | Chr12 | 10436138 | 10443948 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCGGACGCCGACGCGAGGGCCCCGCCCAAATCGGACCCCGGCGCCACGCCGATCGGTTCGATCTCCCCTTCCTCCGCCGCCCCCGCCGCCGGGGAGGACGAGGTGGAGGTCGAGGTGGAGGTGGAGGAGCAGCTCGCCGGACTCGCCATCGCCGATCAGGGGGAGGAGCTGCTGCTTCCCAAGCCCACCGGCTGGGAGGATGGCCCTGTTGTTGTTGCTGGAGATGAGGTCTCCGGTGGTGAGAAGCTGCCGGGTGAGGTGGCGGCGGCGGTGGGGGTGGAGGGTGCTGCGGCGGATTCGAGGCCGCGGTTCCCGAGGCGACCCGGGGAGCCGGACTGCACCTACTACGTCAAGTTCGGGAGCTGCCGCTTTGGGATGAAGTGCAAGTTCAATCATCCGGCGAGGAAGAAGAAGAGTAGGGTGAAAGGTAGTAACGGTGGTAGTGGCAGCGGCGGGAGCAACAGCAGCAGTAACAAAGCCTCCTCGCCTGATGATGAGCAGCAGGCTCCAAAAGAGGAATACGGAAGCTATGTTCCAGATATTTCACCTGAAGTTGATTCTTTGGGATTTGCTGACAAGGGGAGTGCGTCTAACTTAGAAAACTTTAAGAAATATTCTTATGAGATTATCGATGTGAAGAAGGGAAGAGTGGAGCCAAAGGAACTTAAGGTTGCCAAAGAGAAAAGGAAGGAATTTATTTCAGAAGGTAGTTCCCAGGAGGAATGCAAGTATTATTCAACACCTGGAGGATGCAAATTTGGTAAAGCTTGTAAATACCTCCACCGTGATGGAAAAGAAGGGAAAACAGACGCTGAAAAGGTTGACCTGAACTTTCTCGGTCTTCCACTTCGTCCAGGGGAAAAGGAGTGTCCCTACTACATGCGTACTGGGAGCTGCAAGTACGCCACTAACTGCAAGTTTCACCATCCTGATCCTTCTAATGTTGCTTCTAAAGATCCACAGTTGGAGCATGAGAATGGGGATGCTCCACAGCAAGATGTTCAAGGATCATCGTCTCAGCCAAATGCTTCAATTTGGCCCGATCAGAGAACAGTGAATGAGCATCATGTTCCGTTTATAGCTCCATCTCCATCGTACAGTGCAGGGATGCTTCCTCCTCAAGGAATGTATCCACCTCCTGAATGGAATGGGTATCATCAGGTTCCGTTGAATCCATATTATCCTCCTGGAGTCCCTTTCCAACATTTTCCAGCTGCTCCTATAAATCATCCTATGTACAAGGCACCAGAAATACCTGGACATCAGCAGGTTCCTTCCGAGGAATACCCAGAGAGACCTGGCCAACCTGAATGTCAGCATTTTGTGAAGAGTGGTTTTTGCAAATTTAGGATGAAGTGCAAATATCACCACCCAAGGTCACCGGTGCCTCCAGCAGGAGCTCTTAGCCCTCTTGGCTTGCCTATAAAACCTGATCAGCCTGTGTGCACATACTATGGTCGCTATGGGGTCTGCAAATTTGGGCCAGCTTGCGCATACAATCACCCCTTCAATTTTAGCCCTGTACCTGCAGCGGGACCTCCTCTCCTCCCTGCTCAATACCCAACTCCAGGAAACTACACTCTCTGA
More
|
|||||||
| Protein seq | MADADARAPPKSDPGATPIGSISPSSAAPAAGEDEVEVEVEVEEQLAGLAIADQGEELLLPKPTGWEDGPVVVAGDEVSGGEKLPGEVAAAVGVEGAAADSRPRFPRRPGEPDCTYYVKFGSCRFGMKCKFNHPARKKKSRVKGSNGGSGSGGSNSSSNKASSPDDEQQAPKEEYGSYVPDISPEVDSLGFADKGSASNLENFKKYSYEIIDVKKGRVEPKELKVAKEKRKEFISEGSSQEECKYYSTPGGCKFGKACKYLHRDGKEGKTDAEKVDLNFLGLPLRPGEKECPYYMRTGSCKYATNCKFHHPDPSNVASKDPQLEHENGDAPQQDVQGSSSQPNASIWPDQRTVNEHHVPFIAPSPSYSAGMLPPQGMYPPPEWNGYHQVPLNPYYPPGVPFQHFPAAPINHPMYKAPEIPGHQQVPSEEYPERPGQPECQHFVKSGFCKFRMKCKYHHPRSPVPPAGALSPLGLPIKPDQPVCTYYGRYGVCKFGPACAYNHPFNFSPVPAAGPPLLPAQYPTPGNYTL
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr12 | 10442565 | 10443165 | - | OsNip_12t0278800-01,OsNip_12t0278800-03 | OsNip_12t0278800-03,OsNip_12t0278800-01,OsNip_12t0278800-02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.506750 | 2.495512 | 9.135221 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g18120 | RBH | 1.617368 | 1.652717 | 2.281104 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0278800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0009360 | RBH | 0.928889 | 36.448795 | 10.386044 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0009550 | RBH | 0.320203 | 8.957328 | 5.253174 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0009490 | RBH | 1.373430 | 17.793621 | 16.993647 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0009300 | RBH | 0.173123 | 0.562818 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0009180 | RBH | 2.843123 | 24.408726 | 27.904825 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0144200 | RBH | 6.3802015 | 34.90144 | 53.9172785 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0009200 | RBH | 0.238887 | 1.923993 | 1.761842 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0158900 | RBH | 8.753215 | 41.3736705 | 30.062002 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0009120 | RBH | 0.388382 | 0.535800 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0009330 | RBH | 0.713117 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0009320 | RBH | 2.537036 | 92.188194 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0009280 | RBH | 0.889040 | 0.0 | 2.489697 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0009410 | RBH | 0.087716 | 14.511694 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G009170 | RBH | 0.154652 | 6.433628 | 5.526873 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0009070 | RBH | 1.272519 | 28.773783 | 11.796848 |
