Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_12g0269100 | OGI:12025840 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr12:9686915-9687610 | ||||||||
| Gene Symbol | Prol-24, pro13a.3 | ||||||||||
| DNA seq | ATCATTCTCACAACTCAAACATTACAGCAAAAGCATAAGAACTAGAAACCCACCACAATGAAGATCATTTTCTTCTTTGCTCTCCTTGCTATTGCTGCATGCAGCGCCTCTACGCAGTTTGATGCTGTTACTCATGTTTACAGGCAATATCAGCTGCAGCCGCATCTCATGCTGCAGCAACAGATGCTTAGCCCATGCGGTGAGTTCGTAAGGCAGCAGTGCAGCACAGTGGAAATCCCCTTCTTCCAATCACCCGTGTTTCAGCTGAGAAACTGCCAAGTCATGCAGCAGCAGTGCTGCCAACAGCTCAGGATGATCGCGCAACAGTCTCACTGCCAGGCCGTTAGCAGTGTTCAGGTGATTGTGCAGCAGCTACAGCTACAACAGTTTACTGGCATCAACTTCGATCAGACTCAAGCTCTAGCCCAAGCTATGTTGGCCCTAAACTTGCCGTTAATATGCAGTATCTACCCAAGCTACAACACTGCTCCCTGTAGCATTCGCACGGTCGGTGGTATCTGGTACTGAATTGTAGCAGTATAGTAGTACAGGAGAGAGTAATAAAGTCATACATCATCGTGTGTGACAAGTTGAAACATCGAGGCGATACAAATCTGAATGAAAATGTCATGCAAGTTTAAACATAATGCCTCTGTAAGGATAAATCCTAGTACATTGTTGAAATTAATTATCATC
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| CDS seq | ATGAAGATCATTTTCTTCTTTGCTCTCCTTGCTATTGCTGCATGCAGCGCCTCTACGCAGTTTGATGCTGTTACTCATGTTTACAGGCAATATCAGCTGCAGCCGCATCTCATGCTGCAGCAACAGATGCTTAGCCCATGCGGTGAGTTCGTAAGGCAGCAGTGCAGCACAGTGGAAATCCCCTTCTTCCAATCACCCGTGTTTCAGCTGAGAAACTGCCAAGTCATGCAGCAGCAGTGCTGCCAACAGCTCAGGATGATCGCGCAACAGTCTCACTGCCAGGCCGTTAGCAGTGTTCAGGTGATTGTGCAGCAGCTACAGCTACAACAGTTTACTGGCATCAACTTCGATCAGACTCAAGCTCTAGCCCAAGCTATGTTGGCCCTAAACTTGCCGTTAATATGCAGTATCTACCCAAGCTACAACACTGCTCCCTGTAGCATTCGCACGGTCGGTGGTATCTGGTACTGA
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| Protein seq | MKIIFFFALLAIAACSASTQFDAVTHVYRQYQLQPHLMLQQQMLSPCGEFVRQQCSTVEIPFFQSPVFQLRNCQVMQQQCCQQLRMIAQQSHCQAVSSVQVIVQQLQLQQFTGINFDQTQALAQAMLALNLPLICSIYPSYNTAPCSIRTVGGIWY |
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| Function | Prolamin PPROL 17D [UniProtKB/Swiss-Prot:P20698] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0269100 | OsNip_12t0269100-01 | Chr12 | 9686915 | 9687610 | + | RAP2018-11-26 | ||
| CDS seq | ATGAAGATCATTTTCTTCTTTGCTCTCCTTGCTATTGCTGCATGCAGCGCCTCTACGCAGTTTGATGCTGTTACTCATGTTTACAGGCAATATCAGCTGCAGCCGCATCTCATGCTGCAGCAACAGATGCTTAGCCCATGCGGTGAGTTCGTAAGGCAGCAGTGCAGCACAGTGGAAATCCCCTTCTTCCAATCACCCGTGTTTCAGCTGAGAAACTGCCAAGTCATGCAGCAGCAGTGCTGCCAACAGCTCAGGATGATCGCGCAACAGTCTCACTGCCAGGCCGTTAGCAGTGTTCAGGTGATTGTGCAGCAGCTACAGCTACAACAGTTTACTGGCATCAACTTCGATCAGACTCAAGCTCTAGCCCAAGCTATGTTGGCCCTAAACTTGCCGTTAATATGCAGTATCTACCCAAGCTACAACACTGCTCCCTGTAGCATTCGCACGGTCGGTGGTATCTGGTACTGA
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| Protein seq | MKIIFFFALLAIAACSASTQFDAVTHVYRQYQLQPHLMLQQQMLSPCGEFVRQQCSTVEIPFFQSPVFQLRNCQVMQQQCCQQLRMIAQQSHCQAVSSVQVIVQQLQLQQFTGINFDQTQALAQAMLALNLPLICSIYPSYNTAPCSIRTVGGIWY |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.325228 | 0.0 | 0.080908 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0269700 | SBH | 0.0 | 0.0 | 1.852968 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g16880 | RBH | 0.219936 | 0.0 | 0.020827 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0269100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0008900 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0009010 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0009010 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0008840 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0008670 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0132100 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0008690 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0148000 | SBH | 0.0471185 | 0.0981915 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0008630 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0008890 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0008800 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0008810 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0008920 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G008700 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0008630 | RBH | 0.0 | 0.0 | 0.0 |
