Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_12g0230100 | OGI:12018220 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr12:7095860-7101608 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AAGATCCCTCTACCATATGAAATTATTGTTAATAAAAAAAAAGGTGTCCCAAACATGAGAAACCAGGAATCAGCTGGTGTTTCCTCCTCCTTTGATTTGTATATACTATATATACAGTTATGCTAAGTTGCTAACTATGCAGAAATATATCTGAATGAAAAGCACTGCATCTCTTAACACTCTGCAGTATATATGAACTACTACACAGTGACAGCCGGAGTTGAAAGCTCAGGCAACCCACTTTGGCCATTCAGTACAATCACCTTCCCCTCGGAATCCACATCGACAATGGCAGAATCACCCTCCTTCACCTCCCCAGCTAGCATCTTCTCCGCGAGGCTGTCCTCCAGGAGCCTCATGATGGCCCTCCTTAGCGGCCTCGCACCATAGCTCGGGTTGAAGCCTTCGTCAACGATACGCTCCTTGAACTTCTCGGTGACCTGGAGGTCAATGTCCTTGGCCTTGAGCCTGTCAAAGACCTCCTTGAGCATGATCTCGGCGATCTCCTTGACCTCCAGCTTGGTGAGTTGCCTGAAGACGATCATCTCGTCGAGACGGTTGAGGAACTCGGGGCGGAAGTACTGCTTCATCTCCTCGACGACAAGGCTCTTGATCCTGCTGTAGCTGCTGTCCTTCTCATCGTAATCGAGATCGAAACCTATCTTCCGACCACCCTTCTCGATGACGCTGCTTCCGACGTTCGAAGTCATTATGAGAAGTGTGTTCTTGAAGTCCACTGTTCTTCCCTTGCTGTCAGTCAGCCTTCCATCTTCCAAGATCTGGAGCATCATGTTGAATACATCTGGATGCGCCTTTTCGATCTCGTCGAAAAGCACGACTGTGTATGGCCTGCGTCGAACTGCCTCAGTCAGCTGTCCACCCTCCGTGTACCCAACATACCCTGGGGGTGAACCAATCAACTTGGATACAGTGTGCCTCTCCATGAATTCACTCATATCAAGCCTGATCATGGCCTCCTCAGATCCAAAGTAATATGCTGCAAGTGCTTTTGCGAGCTCGGATTTACCAACACCGGTTGGACCTGCGAAAATGAAGCTTGCAATCGGCCTGTTCGGGTTCTTGAGGCCCACACGAGCACGGCGGATGGAGCGACTTATGGCTTTCACAGCCTCATCTTGACCAATGACACGCTGATGCAAAGTCTCTTCCATCTTAAGAAGCTTATCGGACTCGTCACTTGATACCTTCTCTACTGGAATACCAGTCCACGAGGATACAATGTGCTGGATATCTGCTTCATTGACCAGTGGCCCTGTCTCCCCTGATTCAGTCTCTGCTTTGCTCATCTCCTTGCTCTTGTCAATGAGAGCTGTTATCTGGGCCTTCAATTCCATTTCACGATCACGTAACTCTCCAGCCTAATGTCAACAAATTCAAATATATCCAACCAATTATAAGTTATCATTTCTATCAAACAAAAGGCAAATTGACAAGCATTGACTTATGTATATGGGCGAAGTAATGGGAAGGCAATATGCACAGACACTACTACTTGGATAGAATTTCAAGAAACAGTTTGATGAACAGTAGACAGTCATCAACTTAAATAGAAACTTTGTTTTGATGGAATGTACAAAGAATTCCTAGATGACCTTAATTAACTATGCCATGTATGAATTATAATTGTCATTTCACATAACAACGGATAGTAATTCAGTAAGCATTTAAACAGTTAAGTTGCTTTACGAACTTGAAGACAGATAAAAATCTAGTAGCTCATCCATAGGCAGTTACCTTTTCGAAGTCCTGGCTACGGACAGCTTCATTCTTATCTTTTGTGATTTGCTTGAGCTCCTTGTCAAGCTCTCTAGCTTCTTCAGGAACCTGTAGAAATGGCTGGACTCAGATATTGTGTAGAGCATGCAAGAAATTGCAAAATGTGTGGAACATCCAAACAAATGGTAGCATATGACCAAATTCAATACCTGGGCATGTCGAAGCCTTACACGTGAACCTGCTTCATCAATCAAATCAATTGCTTTATCTGGGAGGAAACGATCACTGCAAACAAAATAATGTGTCAGATAAATAAAATCTGAATGATATATATAGTAGTCAAGCTATATTTTATTCAATAGACAGTTGAGTTGTTGACTCTGATAGTAACATATGTCCTGTTCAATAATTTAATCTTTCAACTGGGAAACTCCTCACAAACATTTTATTGAAATGCTACAGAAGGTCCACGAACAATATGCGCGCTCAACGAGGTGATATTTTATAGCTTATAACCAAGTAATTCACACACCTGATGTATTGATAAGATAGCTTGGCAGCTGAAATCAGAGCATCATCAGTGTAACGAAGTTTATGATGGATCTCATATCGTTCCCGAAGCCCTCTGAGAATTTCTATGGTTTCATCAACTGTTGGCTCTGGCACTCTTACAGGCTGGAAACGTCTTTCTAATGCTGGGTCTTTCTCAATATGCTTCCTGTATTCATCAAGTGTGGTGGCTCCAATACACTGAAATCAAACAAAGAGAATATATTGTGAGACATTATAGTAACTAAGAAGACATCAAGAGGTTCAGCATGACACAATGATGGTAGATAGTGCATATATTAAACAACAAATAGACCAGAGTACCATCCACATACCTGTAGTTCTCCTCTTGCTAATGCTGGCTTTAAAATGTTAGCAGCGTCAATAGCACCCTCAGCTGCTCCTGCTCCTATGAGAGTGTGGACTTCATCAATAAATAGTATTATCTCATCACTCTGCTTGATTTCTTCCATCAGCTTCTTTAATCTTTCTTCAAATTCTCCACGGTATTTTGTACCAGCAACAAGAAGTCCCATATCAAGGGTAATGACCTGCAGTAAATAAGTTCAAATAAATATGAGATAATTTTCTCACTAATTACACAAAAGCCCAAGCAAGAGAGCACAGAAAGACCTAACACATAAAGGGGCCACAATCAAGCCTACGCTAAGATGTTTACAACTCACAGAGGAAATATAAGGATTAATGCATATGGTATTGGGTATATCATGAACAATTAAAGAAACAAAGTATACCTTCTTTCCTTCAATTGTTTCAGGCACATCACCAGTAGAAATGCGTTGAGCAAGGCCTTCTGCAATTGCTGTCTTTCCAACACCAGGCTCTCCAATTAAGCATGGGTTGTTCTTTGTTCGTCTGCCCAGAATTTGTACGACACGCTCAATCTGGGGTTGCCTTCCAACAACAGGATCTAGCTTTCCCTACAGAGATTATCAGAGTTAACAATTATGCATGCACAAGTGCTACTATGTTGCAATAGGACAAAAACATTACCTCCTCTGCTAATTTTGTTAAATTAGTTCCGTACTCCTCAAGTGTTGGCATTTTATTGCCACTACTCCCTCCTCCAACTCCTGCACCAACAGCTTCTGTAGTCTCGCCAATCATTCGGATAACCTAGATGCATGTTATGTTCGTTATAAATGCTAAAGAAAAACAAAGACTACTCGTACAGAGAGGAGAAAAAATTCAGATATATGCACATCATTTACCTGCGTGCGAATATTGCTAGGATCGGCTCCAAGGCTTTCGAGCACACGGGCTGCTACACCTTCACCCTCACGGAGCAGTCCAAGAAGCAAGTGCTCAGATCCAATATAGTTGTGTCCTGGAAACATAAGGGCATCAAGTCTGGAAAACCAATGATCTTCTATGTCATACACTCATATGTTGAAATATAATAAGAAAATCAGATGCATCACATCACGGCATACAAAATCCATAGTGATATAAAAGTTTCTTTTGTTAACATGTGAACAGTCAGCAGCTTAGCAACCATGTATTCAATATGAGTAACACCGATAAGCCAATGAATACACCAATGCGAAGGGAATAGTTCCCATAATGAATAAGAGAATTCCAAACAATACAAGAACAACAGATGTGGCAAACCAAATTAACAAGGTACATAATCATGCAACTAGTCCATTGTAACTCGTCTTTTTACTTTTACTTTACCGTAAGAGGAGAAGTTAGCACTTTTAGTAGTACATATTTAACAAGAATATGATGTCTTGAAGTATATGTTGGTGACTTCCAATTCAGCCCATTTAGAAAGCAACATGTTGGTTAGGGCCAAAAGTGTGACAGCAACAATAACCAACTACTATTTATGAAAGTCACTACCCTTCTGATTAGGTTCAGTTTCATCACCAAACCAGAGTGATCCATGGATTGTTGGTAATTAGTGAGTGAGAATGATTGGATAGCTAAGCAATACACATTGAGACTTTTTGATACATAGATGTCACTGTCCGTCTATTGGATTTCAATTTTTGAAGTGTGATTAGGTACAATAAAAACAAAAATTAGTGATAAAATCAAATCAATCAAAATGCAAGACATACCTAGCTGACGAGCTTCTTCCAATGAAAGCTCCAAAACACGTTTTGCACGTGGTGTGAATGGTATTTCGACAGCAACGAAACCATTGCCCCTCCCAATGATCTTCTCCACTTCCACACGTGCATCCTTGAGATTTATGCCCATTGACTTGAGCACCTTAGCAGCAATACCAGTCCCTTCTCCAATCAGACCCAAGAGAATTTGCTCAGTACCGACAAAGTTGTGGCCCAACCGCCTTGCCTCTTCTTGCGCAAGCATTATAACCTTAATAGCTTTCTCAGTGAACCTCTCAAACATCGATCTGGTTACAAAGCGAGCACGCCTTCCCCGTCTTGATCTGTAAGATGCAACCGTCGATCTGAAGTTGGTGACAGGCGTGACTGAGAAGCTATGCACCGATCTCAGACCGACAAATGCGGCCATCTTAACTGGGCGGCTCAAGGACATCGCCAACATTGAGGGAGGCCTCCTTGTGCCATGAGACTTCCATCGCTGACCACTTACACGGCCTGCAAAAGTTGTTCCGAGGGCAACCGGCTGGAGCAGGGTGCCTGCCATGGTCAGAAGTAGCTTCCCCAAACCTGTTCGGGACCAACAATTCTGATATAGTTAGAAACTAATCTAGATACTTGATCCCCAATGGAAGTAAGCTAAATGCTCAGAGATAAGCACAATGGAGAGTATGGAATCTACAATAACACTACAAAACATGCTCTGCTTATTATTCTTTCGTTTCTAAACCAAAGATACTGTGCTTCATCTTCTTCACTAAATTTGCACATCATCTAAAAAGATATTCATTAAATTGCAAATCATAAATAGCTATTTCTCCAGTATATATTTGTTTCCTCTTCTTTCTACTCTATGATTAGTTCAGAAGGAAATTGCACTGCTACAAAACTCCCAGCAAAAAGAACTACCACTCCCATCTGTTCAATCACTGAACCACACACCCAAGATAGAGAATTGGATAAAGATCACCGATACAACACAGCATCCCTATCCACAAACATCCTCACAACACCAACACCCAAACAAACAAAAGAAAAGTAATCTTTATTCCCATACAGGAAAGAGATAACATCTCTAGGGATCGCCAATACCAAGAACTAAAAAAAAAAGATCGCTAATCCATCCAAGAACTCAAATTTTCCGCACCACAATCCCCCCCACCCGGCAGCCAACAACAGGAACCAACCAAGAACGATATAATTTACAGAGAGAAAACGAGCTAGGATGGACGCCATGGGGATAGGGGGGGAGAAGCTTTACCTTACCTCGGAGGAGAGGAGAGAGACAAAAGGTGCGTTCTTGTTATTTTTCTTTCCTCCCTAGAGATAAGGGGGAAGAAGAGAGACTAGGGAGAAGACGGGCCTCC
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| CDS seq | ATGGCAGGCACCCTGCTCCAGCCGGTTGCCCTCGGAACAACTTTTGCAGGCCGTGTAAGTGGTCAGCGATGGAAGTCTCATGGCACAAGGAGGCCTCCCTCAATGTTGGCGATGTCCTTGAGCCGCCCAGTTAAGATGGCCGCATTTGTCGGTCTGAGATCGGTGCATAGCTTCTCAGTCACGCCTGTCACCAACTTCAGATCGACGGTTGCATCTTACAGATCAAGACGGGGAAGGCGTGCTCGCTTTGTAACCAGATCGATGTTTGAGAGGTTCACTGAGAAAGCTATTAAGGTTATAATGCTTGCGCAAGAAGAGGCAAGGCGGTTGGGCCACAACTTTGTCGGTACTGAGCAAATTCTCTTGGGTCTGATTGGAGAAGGGACTGGTATTGCTGCTAAGGTGCTCAAGTCAATGGGCATAAATCTCAAGGATGCACGTGTGGAAGTGGAGAAGATCATTGGGAGGGGCAATGGTTTCGTTGCTGTCGAAATACCATTCACACCACGTGCAAAACGTGTTTTGGAGCTTTCATTGGAAGAAGCTCGTCAGCTAGGACACAACTATATTGGATCTGAGCACTTGCTTCTTGGACTGCTCCGTGAGGGTGAAGGTGTAGCAGCCCGTGTGCTCGAAAGCCTTGGAGCCGATCCTAGCAATATTCGCACGCAGGTTATCCGAATGATTGGCGAGACTACAGAAGCTGTTGGTGCAGGAGTTGGAGGAGGGAGTAGTGGCAATAAAATGCCAACACTTGAGGAGTACGGAACTAATTTAACAAAATTAGCAGAGGAGGGAAAGCTAGATCCTGTTGTTGGAAGGCAACCCCAGATTGAGCGTGTCGTACAAATTCTGGGCAGACGAACAAAGAACAACCCATGCTTAATTGGAGAGCCTGGTGTTGGAAAGACAGCAATTGCAGAAGGCCTTGCTCAACGCATTTCTACTGGTGATGTGCCTGAAACAATTGAAGGAAAGAAGGTCATTACCCTTGATATGGGACTTCTTGTTGCTGGTACAAAATACCGTGGAGAATTTGAAGAAAGATTAAAGAAGCTGATGGAAGAAATCAAGCAGAGTGATGAGATAATACTATTTATTGATGAAGTCCACACTCTCATAGGAGCAGGAGCAGCTGAGGGTGCTATTGACGCTGCTAACATTTTAAAGCCAGCATTAGCAAGAGGAGAACTACAGTGTATTGGAGCCACCACACTTGATGAATACAGGAAGCATATTGAGAAAGACCCAGCATTAGAAAGACGTTTCCAGCCTGTAAGAGTGCCAGAGCCAACAGTTGATGAAACCATAGAAATTCTCAGAGGGCTTCGGGAACGATATGAGATCCATCATAAACTTCGTTACACTGATGATGCTCTGATTTCAGCTGCCAAGCTATCTTATCAATACATCAGTGATCGTTTCCTCCCAGATAAAGCAATTGATTTGATTGATGAAGCAGGTTCACGTGTAAGGCTTCGACATGCCCAGGTTCCTGAAGAAGCTAGAGAGCTTGACAAGGAGCTCAAGCAAATCACAAAAGATAAGAATGAAGCTGTCCGTAGCCAGGACTTCGAAAAGGCTGGAGAGTTACGTGATCGTGAAATGGAATTGAAGGCCCAGATAACAGCTCTCATTGACAAGAGCAAGGAGATGAGCAAAGCAGAGACTGAATCAGGGGAGACAGGGCCACTGGTCAATGAAGCAGATATCCAGCACATTGTATCCTCGTGGACTGGTATTCCAGTAGAGAAGGTATCAAGTGACGAGTCCGATAAGCTTCTTAAGATGGAAGAGACTTTGCATCAGCGTGTCATTGGTCAAGATGAGGCTGTGAAAGCCATAAGTCGCTCCATCCGCCGTGCTCGTGTGGGCCTCAAGAACCCGAACAGGCCGATTGCAAGCTTCATTTTCGCAGGTCCAACCGGTGTTGGTAAATCCGAGCTCGCAAAAGCACTTGCAGCATATTACTTTGGATCTGAGGAGGCCATGATCAGGCTTGATATGAGTGAATTCATGGAGAGGCACACTGTATCCAAGTTGATTGGTTCACCCCCAGGGTATGTTGGGTACACGGAGGGTGGACAGCTGACTGAGGCAGTTCGACGCAGGCCATACACAGTCGTGCTTTTCGACGAGATCGAAAAGGCGCATCCAGATGTATTCAACATGATGCTCCAGATCTTGGAAGATGGAAGGCTGACTGACAGCAAGGGAAGAACAGTGGACTTCAAGAACACACTTCTCATAATGACTTCGAACGTCGGAAGCAGCGTCATCGAGAAGGGTGGTCGGAAGATAGGTTTCGATCTCGATTACGATGAGAAGGACAGCAGCTACAGCAGGATCAAGAGCCTTGTCGTCGAGGAGATGAAGCAGTACTTCCGCCCCGAGTTCCTCAACCGTCTCGACGAGATGATCGTCTTCAGGCAACTCACCAAGCTGGAGGTCAAGGAGATCGCCGAGATCATGCTCAAGGAGGTCTTTGACAGGCTCAAGGCCAAGGACATTGACCTCCAGGTCACCGAGAAGTTCAAGGAGCGTATCGTTGACGAAGGCTTCAACCCGAGCTATGGTGCGAGGCCGCTAAGGAGGGCCATCATGAGGCTCCTGGAGGACAGCCTCGCGGAGAAGATGCTAGCTGGGGAGGTGAAGGAGGGTGATTCTGCCATTGTCGATGTGGATTCCGAGGGGAAGGTGATTGTACTGAATGGCCAAAGTGGGTTGCCTGAGCTTTCAACTCCGGCTGTCACTGTGTAG
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| Protein seq | MAGTLLQPVALGTTFAGRVSGQRWKSHGTRRPPSMLAMSLSRPVKMAAFVGLRSVHSFSVTPVTNFRSTVASYRSRRGRRARFVTRSMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGNGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLESLGADPSNIRTQVIRMIGETTEAVGAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRISTGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVRVPEPTVDETIEILRGLRERYEIHHKLRYTDDALISAAKLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQVPEEARELDKELKQITKDKNEAVRSQDFEKAGELRDREMELKAQITALIDKSKEMSKAETESGETGPLVNEADIQHIVSSWTGIPVEKVSSDESDKLLKMEETLHQRVIGQDEAVKAISRSIRRARVGLKNPNRPIASFIFAGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRKIGFDLDYDEKDSSYSRIKSLVVEEMKQYFRPEFLNRLDEMIVFRQLTKLEVKEIAEIMLKEVFDRLKAKDIDLQVTEKFKERIVDEGFNPSYGARPLRRAIMRLLEDSLAEKMLAGEVKEGDSAIVDVDSEGKVIVLNGQSGLPELSTPAVTV |
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| Function | Chaperone protein ClpC2, chloroplastic [UniProtKB/Swiss-Prot:Q2QVG9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0230100 | OsNip_12t0230100-01 | Chr12 | 7095860 | 7101608 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCAGGCACCCTGCTCCAGCCGGTTGCCCTCGGAACAACTTTTGCAGGCCGTGTAAGTGGTCAGCGATGGAAGTCTCATGGCACAAGGAGGCCTCCCTCAATGTTGGCGATGTCCTTGAGCCGCCCAGTTAAGATGGCCGCATTTGTCGGTCTGAGATCGGTGCATAGCTTCTCAGTCACGCCTGTCACCAACTTCAGATCGACGGTTGCATCTTACAGATCAAGACGGGGAAGGCGTGCTCGCTTTGTAACCAGATCGATGTTTGAGAGGTTCACTGAGAAAGCTATTAAGGTTATAATGCTTGCGCAAGAAGAGGCAAGGCGGTTGGGCCACAACTTTGTCGGTACTGAGCAAATTCTCTTGGGTCTGATTGGAGAAGGGACTGGTATTGCTGCTAAGGTGCTCAAGTCAATGGGCATAAATCTCAAGGATGCACGTGTGGAAGTGGAGAAGATCATTGGGAGGGGCAATGGTTTCGTTGCTGTCGAAATACCATTCACACCACGTGCAAAACGTGTTTTGGAGCTTTCATTGGAAGAAGCTCGTCAGCTAGGACACAACTATATTGGATCTGAGCACTTGCTTCTTGGACTGCTCCGTGAGGGTGAAGGTGTAGCAGCCCGTGTGCTCGAAAGCCTTGGAGCCGATCCTAGCAATATTCGCACGCAGGTTATCCGAATGATTGGCGAGACTACAGAAGCTGTTGGTGCAGGAGTTGGAGGAGGGAGTAGTGGCAATAAAATGCCAACACTTGAGGAGTACGGAACTAATTTAACAAAATTAGCAGAGGAGGGAAAGCTAGATCCTGTTGTTGGAAGGCAACCCCAGATTGAGCGTGTCGTACAAATTCTGGGCAGACGAACAAAGAACAACCCATGCTTAATTGGAGAGCCTGGTGTTGGAAAGACAGCAATTGCAGAAGGCCTTGCTCAACGCATTTCTACTGGTGATGTGCCTGAAACAATTGAAGGAAAGAAGGTCATTACCCTTGATATGGGACTTCTTGTTGCTGGTACAAAATACCGTGGAGAATTTGAAGAAAGATTAAAGAAGCTGATGGAAGAAATCAAGCAGAGTGATGAGATAATACTATTTATTGATGAAGTCCACACTCTCATAGGAGCAGGAGCAGCTGAGGGTGCTATTGACGCTGCTAACATTTTAAAGCCAGCATTAGCAAGAGGAGAACTACAGTGTATTGGAGCCACCACACTTGATGAATACAGGAAGCATATTGAGAAAGACCCAGCATTAGAAAGACGTTTCCAGCCTGTAAGAGTGCCAGAGCCAACAGTTGATGAAACCATAGAAATTCTCAGAGGGCTTCGGGAACGATATGAGATCCATCATAAACTTCGTTACACTGATGATGCTCTGATTTCAGCTGCCAAGCTATCTTATCAATACATCAGTGATCGTTTCCTCCCAGATAAAGCAATTGATTTGATTGATGAAGCAGGTTCACGTGTAAGGCTTCGACATGCCCAGGTTCCTGAAGAAGCTAGAGAGCTTGACAAGGAGCTCAAGCAAATCACAAAAGATAAGAATGAAGCTGTCCGTAGCCAGGACTTCGAAAAGGCTGGAGAGTTACGTGATCGTGAAATGGAATTGAAGGCCCAGATAACAGCTCTCATTGACAAGAGCAAGGAGATGAGCAAAGCAGAGACTGAATCAGGGGAGACAGGGCCACTGGTCAATGAAGCAGATATCCAGCACATTGTATCCTCGTGGACTGGTATTCCAGTAGAGAAGGTATCAAGTGACGAGTCCGATAAGCTTCTTAAGATGGAAGAGACTTTGCATCAGCGTGTCATTGGTCAAGATGAGGCTGTGAAAGCCATAAGTCGCTCCATCCGCCGTGCTCGTGTGGGCCTCAAGAACCCGAACAGGCCGATTGCAAGCTTCATTTTCGCAGGTCCAACCGGTGTTGGTAAATCCGAGCTCGCAAAAGCACTTGCAGCATATTACTTTGGATCTGAGGAGGCCATGATCAGGCTTGATATGAGTGAATTCATGGAGAGGCACACTGTATCCAAGTTGATTGGTTCACCCCCAGGGTATGTTGGGTACACGGAGGGTGGACAGCTGACTGAGGCAGTTCGACGCAGGCCATACACAGTCGTGCTTTTCGACGAGATCGAAAAGGCGCATCCAGATGTATTCAACATGATGCTCCAGATCTTGGAAGATGGAAGGCTGACTGACAGCAAGGGAAGAACAGTGGACTTCAAGAACACACTTCTCATAATGACTTCGAACGTCGGAAGCAGCGTCATCGAGAAGGGTGGTCGGAAGATAGGTTTCGATCTCGATTACGATGAGAAGGACAGCAGCTACAGCAGGATCAAGAGCCTTGTCGTCGAGGAGATGAAGCAGTACTTCCGCCCCGAGTTCCTCAACCGTCTCGACGAGATGATCGTCTTCAGGCAACTCACCAAGCTGGAGGTCAAGGAGATCGCCGAGATCATGCTCAAGGAGGTCTTTGACAGGCTCAAGGCCAAGGACATTGACCTCCAGGTCACCGAGAAGTTCAAGGAGCGTATCGTTGACGAAGGCTTCAACCCGAGCTATGGTGCGAGGCCGCTAAGGAGGGCCATCATGAGGCTCCTGGAGGACAGCCTCGCGGAGAAGATGCTAGCTGGGGAGGTGAAGGAGGGTGATTCTGCCATTGTCGATGTGGATTCCGAGGGGAAGGTGATTGTACTGAATGGCCAAAGTGGGTTGCCTGAGCTTTCAACTCCGGCTGTCACTGTGTAG
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| Protein seq | MAGTLLQPVALGTTFAGRVSGQRWKSHGTRRPPSMLAMSLSRPVKMAAFVGLRSVHSFSVTPVTNFRSTVASYRSRRGRRARFVTRSMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGNGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLESLGADPSNIRTQVIRMIGETTEAVGAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRISTGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVRVPEPTVDETIEILRGLRERYEIHHKLRYTDDALISAAKLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQVPEEARELDKELKQITKDKNEAVRSQDFEKAGELRDREMELKAQITALIDKSKEMSKAETESGETGPLVNEADIQHIVSSWTGIPVEKVSSDESDKLLKMEETLHQRVIGQDEAVKAISRSIRRARVGLKNPNRPIASFIFAGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRKIGFDLDYDEKDSSYSRIKSLVVEEMKQYFRPEFLNRLDEMIVFRQLTKLEVKEIAEIMLKEVFDRLKAKDIDLQVTEKFKERIVDEGFNPSYGARPLRRAIMRLLEDSLAEKMLAGEVKEGDSAIVDVDSEGKVIVLNGQSGLPELSTPAVTV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 132.861511 | 118.688248 | 32.891201 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0397100 | RBH | 69.505684 | 79.215240 | 47.178692 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g12850 | RBH | 89.858047 | 79.418655 | 8.391642 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0230100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0007310 | RBH | 49.894817 | 14.363753 | 16.712576 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0007400 | RBH | 22.276886 | 1.528861 | 21.966953 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0007460 | RBH | 81.818626 | 11.897626 | 73.991936 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0007470 | RBH | 7.822100 | 0.265575 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0007270 | RBH | 511.735779 | 16.343996 | 60.717880 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0099600 | RBH | 83.0985605 | 8.730696 | 31.47573 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0007240 | RBH | 17.547451 | 0.315163 | 5.946641 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0104700 | RBH | 106.4886325 | 12.113864 | 18.0127675 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0007100 | RBH | 16.942116 | 0.106730 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0007400 | RBH | 34.589542 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0007240 | RBH | 387.090088 | 4.780136 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0007270 | RBH | 60.185024 | 0.0 | 14.966127 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0007260 | RBH | 20.841961 | 1.978041 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G007180 | RBH | 39.448444 | 1.123553 | 18.610737 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0007220 | RBH | 106.196609 | 26.395229 | 58.739685 |
