Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_12g0210000 | OGI:12014990 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr12:5752504-5754821 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CCCAAGATCGACAGTATATGCTAGTACATTAATTTCTAACAAGATTTTTAGCACAGTAGTATTACCTGACAAGATTTTTTTAAGAGAGAGAGCTACGAAACCAAACTATTGATTACACCCTGACTAATTTGGGTTCTACAATTGAAATAACACAATGAACCCAACCCTAAATCAAAATCACCAGTCGTCAGATATCACCTTTTTCATCCTCACAACTACAAAGGGAGCAACCTCACTGTTAAAATTCTCACTTCGATCAATAGTCCAATTTTTCTTTACTCTTTATATATATTTTTTTGAGGGCTTTGTTTACTCTTTATATTCTTGTGAAGATAAATGGCGTCCTCTGCTTCCTCGATTGCATCCCTAAGCTTCCAGAACCACCGATCCAACATTACGCTGTGGTCCTTGAAGTGATCTGGGTTGACAACATCAAGCACCGCTTGGATGTGCAGCATCCCTTCCCCAAGCTTGTTCTTCATCTCTTCCATGCTTTTAGCGCTGATTTAGCCATCAAGGTAGTTTAAGGCCCTGGTGATAATCTCCCCGATGACAGGAGCTGCCACGGATTTCCCTGCAAACACCACTGCAGCCGAAGTAGCCATGGCAGCGTGGAGAACTGCTGGTTGCTAGGGCTGTTGAAGCTGCAGAAGTAGCTATGAGTGGAGATAATGTAGAGAGAGAGAAAACAAACACAGGTGATGCTTAAACCACTTTCCTCTTTGAAATGGATTGAATAAAGTTTTATACTCAGTTTGTGGTTGTTTTCTTCTGCCGTGTTGTGCTTATTCTTTTAATTGTTGTATAAAAAGGAGTTATAATTGATGTAATCTGTTTTACAGATAAAAACGCTTAGATATAATATGTTATTATCCAACTATCATGTCTCTTCTAACTGTTTCATATTTTCATACATAATAATATCATCATTTGCAACATAGATTAGAACAAAAGTCATTTGCCAAATAGCCAAAAGCTGTTGCACTAAACAAGGTTATCATAATGCAACATAATACGAAACAAAGGCCTTGTTTAGTTCCCAAATTTTTTTTCCCAAAAATATCACATCGAATATTTGGACACATGCATGGAGCATTAAATATGGACGAAAAGATCAACTAATTCCACAGTTTGCATGGAAATCGCGAGACGAATCTTTTGAGCCTAATTAGTCCATGATTAGCCATAAGTGCTACAGTAACCCACATGTGCTAATGACAGATTAATTAGGCTTAATTAATTCGTCTCGCGGTTTCCAGACGAGTTATGAAATTAGTTTTTTCATTCGCGTCCGGAAACTCCTTCCGACATCCGGTTAAACGTCTGATGTGATAACCAAAAATTTTCATTTCGCGAACCACACCCAAAGGCACAAAAGAGAAAAAGGGGGGCAGGAAGCTTCACATCGATTTTCAGTTGTCCCCATCCATCTTGTGGGGACCAAGCAAATGAGACACAGACAAGCGTTTATTTAAGCAGAACCCCATTGGTTGGCCAAGATCTGATTATTACAAGCCATAACAGCCTATTAGCGACAAAAAATAATAATTTATACTTAAGTGTCTTTAGCGACTTAAAACCAACGTTGAAAAAGAAACTACACCAAAAATATCATAAAATCAATCTCTGCAATTCACATGGAAAAGTCACCACGTCACTTTTCTATTGAATTAGTAGTACATACCCCCAGATTACTTGTTCACATGGTCGCTCTCCCAGCTGAGTTCAGTGCTAATCAATTAGTCTCTCAAGTCAAGTTTTATAGTAGGGGTGGTTGCCACATCTAATCTTATGTGACATGTTTAGTTTAGGGGCAATTCATCTAGCATTATAGTACTTGCCCTCATGCGACATCTGCAGCATCATTTCACTTTTGGGTCAAGGGATGTTGAAGCATTGCAATCAGTGAACACATAATTTTTTTTAAAACCAACATTCTTCCTATGCATGATCGAAAACCACGAGAAGAATGCTACAACAAAAAAAAACAATAAAAGAAAAAGGAAACCACGAGGAGAAATCGAGGGAATCCATCCAGGGTCCGGATTTAATTCAACCGATGCATACGGAGAGAGAGCACCTGGTTGTCGCGGATCGGATCGAGGCACGCAGCGGCGGCGTGGATGTCGTCAGCAGCCGTAGCCACGATTGGGGATGGATCCAGTCTTGACTTCTCCCCCTTCGCTAGGTCCGGCGAAGAGTGCGGGGGCATGCGCTAGATCGGACGGGAGCCAGCGGCGGCGGTGGTGGCTGTTGGAGGTTGGGGGCGCAGAGCAGCGGTGGCTCCGGCAATGGCGCACGACGGCGGCGACCATCGC
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| CDS seq | ATCAGCGCTAAAAGCATGGAAGAGATGAAGAACAAGCTTGGGGAAGGGATGCTGCACATCCAAGCGGTGCTTGATGTTGTCAACCCAGATCACTTCAAGGACCACAGCGTAATGTTGGATCGGTGGTTCTGGAAGCTTAGGGATGCAATCGAGGAAGCAGAGGACGCCATTTATCTTCACAAGAATATAAAGAGTAAACAAAGCCCTCAAAAAAATATATATAAAGAGTAA |
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| Protein seq | ISAKSMEEMKNKLGEGMLHIQAVLDVVNPDHFKDHSVMLDRWFWKLRDAIEEAEDAIYLHKNIKSKQSPQKNIYKE |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0210000 | OsNip_12t0210000-01 | Chr12 | 5752504 | 5754821 | - | RAP2018-11-26 | ||
| CDS seq | ATCAGCGCTAAAAGCATGGAAGAGATGAAGAACAAGCTTGGGGAAGGGATGCTGCACATCCAAGCGGTGCTTGATGTTGTCAACCCAGATCACTTCAAGGACCACAGCGTAATGTTGGATCGGTGGTTCTGGAAGCTTAGGGATGCAATCGAGGAAGCAGAGGACGCCATTTATCTTCACAAGAATATAAAGAGTAAACAAAGCCCTCAAAAAAATATATATAAAGAGTAA
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| Protein seq | ISAKSMEEMKNKLGEGMLHIQAVLDVVNPDHFKDHSVMLDRWFWKLRDAIEEAEDAIYLHKNIKSKQSPQKNIYKE |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.105325 | 0.0 | 0.772282 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g10710 | SBH | 7.322405 | 5.316416 | 1.880508 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0210000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0006860 | RBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0006940 | SBH | 1.235062 | 2.145403 | 7.958333 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0006920 | SBH | 7.314071 | 9.342802 | 25.476358 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0006810 | SBH | 0.898889 | 0.404332 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0006670 | RBH | 13.962980 | 11.342574 | 28.481133 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0085700 | RBH | 0.518548 | 2.1452245 | 2.7213625 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0006650 | RBH | 0.040031 | 0.0 | 0.452840 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0091400 | SBH | 10.8015765 | 16.1393895 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0006550 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0006810 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0006670 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0006700 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0006570 | SBH | 0.636942 | 12.695457 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G006710 | SBH | 2.978663 | 1.063882 | 4.188571 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0006680 | SBH | 2.904938 | 43.218353 | 4.945467 |
