Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_12g0152600 | OGI:12007100 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr12:2592552-2594898 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTTGCAAAGAAATATGCATTTATGGGATGTCCTTACAGGGATTTCCACCAAACAAGTTCACACGGTACATCTTTCTTAAGGACCTGTCTATGCACCCAAAACAACATTCTCCATGTACTGAATTGCATGTTTTGACTGGCCTTCATCAAATCCCTTAAACAAGGCATTATGTGTGCAGTGATCTGGATGGATACCATGCTGATGCATTTCAGAATACAGCCTTATAGCCTCTTCCCAGTTACCTTCTTTACAGTTCCCATCAATCAGCAAAGTGTACGTGTATTTGTTTGGCGACAATCCTCTTTCCAGCATCTCATGAAAATGCTGATAAGCTAAGTTAGTTCTCCCCATCCTGCAAAGTGCATGTATGAGCACATTATATGTTACTTCATTAGGTCGCACTCCTTCCTCCAGCATCTTTTGAAACCAACCATATGCTGAGTAAAGATTTCCTCTTCTACAGTATGCATGAATGAAAACAGTATAGGTCACAGCCGAAGGTGGCAACCCACTTACAAGCATTCCATCAAAAATATCCCTTGCTTCTCTCAGACGCCCCCTTTCACAATGTGCGTGAATCAAGCATGTGTACGTGATGCAGTCAGGCTGTAAACCGTCACTGACCATCTTCATCCACAACACATAGGCATCTTTCAAGTTACCAGATTTGCACAATCCATCAAGGAAAATATTGTATGTTACTGTATCAGAAGAAATTCCTCTTGAAATCATCACCTCTGTCAGCTGAAATGCCTCAGAAGTAGAACCTAGAATCAGCTCTGCAGAAATCCTTGTATTATAGGCAAAGCAATCTGGCTGCAAACCTTTGCTCAACATTTCATCAAAGAACTCTCTTACCATCGCAAGATTCCTCACCTTACGAGACCCATTCATGAGAATCGTGTATGTAGAAACATCAGGCTGACAGCCCTGCTCTACCATTTCCTGCTTGAATCTCCTAGCTTCCTCTAAATCACCTAATCTACAATAACCATCTAAAAGAATGTTATATGTCAAAACTGATGGGGCTAACCCCGCACGCTTCAAATCACCAAATAACCAAAGTGCCTCCTTCAAATTCCCTGCCTTACAATACCCATTTATTAAAGAATTGTATGTAATCAAATCTGGAAGTAATCCCATTGCTCTCATTTCCACAAACTTCATCCGAGCTGCCTCCACATTACCACTTCTAAACATTCCATGAATAATTGTGTTATATGTCACCACCGTGGGTACAATGCCCTCATTCTCCATCTCCAACTGCAATGCTCCAGCCTTTTCAACAGAACCCCTTGCAAAATACCCAGTAATAAGTGGATTAAACGTGAAAGCTGACGCCTTCTTGGACATCCGCATTCTGTCAACCAGCTGAGCTGCCTTCTCCAGCTCACCTTTCCTGGCCAACCCATTAATCACCACATTGTATGTGACATCACTCGGCAAGCATCCACCAGGCCGGGCCTCCATCTCTCTGAGCAACTTGGCAGCCTGATCCACCCTACCCTCCCTGAAGAAAGAATCCAACAACGTGTTGTATGTGACAATGCTCGGCTCGATTCCAAGCTGAAGCATCTCTGCATACACCGAGCGCATGTCATCCCACCTGGCTTCATCACGCAGCGCACGGAGCACGAGGTTGCATTCCTTGATGAAAGGGGGAACTCCGTGGTGCGCCATCTCACGGAAAGCGGCAAGGCATAGCGTCGAACAGGTGGAGGGCGCAGGGTTGCGAGCTCGGGTATTGAACTTGGTGGACAGGCGCAGGAGGAGGTTGAGGAGGTAGTGGAGGGAGACGGTGGTAGGAAAGGAGAGGAGGAGGGAGACAAGGGGGAGGAGAAGGCCGAGGTGGATGGCGCGGACGGAGACGGGGTGGGCGGCGTGGAGGTGCTTGGCCTCGGCGAGCGGGACGAGGACGGCGGCGTACGCGGAGGCGCAGCGCGGGAAGCCGCGCGGGGTGGCCTCCGCCCACCGGAACAGCTGGCGCGCGAGGCCCGGGAGGCCGCGGAGCGCGGCGTGGACGTCGCCAGCGGCGAGCACCTCTCGGAGCGCCTCGGGTGGTGGGGGATCAGACGCGAGCAGCGACGCGAACGGGCTCTCCTCTGTCCGAGGCGGGGGAATCAGCGCCGTCGACGACGACGACGACGACGAGGAGACGAAGCGGAGGCCGGAGATGGCGGCGGCGGCGGCGGATGCGGCAGGAGCTTGGGATTTGCAGGGGTGGATGGAGAAGAGCATGGGTTAATGTTCGAGTCCTCCCCGGCGGCGCCTCGCCATGAATGGCTGCGGCGGCGGGCGGAGGCGGCGCCGGCGGCGGGGAGGAGGAGGGGAGAGGAGGGAGTTCGAT
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| CDS seq | ATGCTCTTCTCCATCCACCCCTGCAAATCCCAAGCTCCTGCCGCATCCGCCGCCGCCGCCGCCATCTCCGGCCTCCGCTTCGTCTCCTCGTCGTCGTCGTCGTCGTCGACGGCGCTGATTCCCCCGCCTCGGACAGAGGAGAGCCCGTTCGCGTCGCTGCTCGCGTCTGATCCCCCACCACCCGAGGCGCTCCGAGAGGTGCTCGCCGCTGGCGACGTCCACGCCGCGCTCCGCGGCCTCCCGGGCCTCGCGCGCCAGCTGTTCCGGTGGGCGGAGGCCACCCCGCGCGGCTTCCCGCGCTGCGCCTCCGCGTACGCCGCCGTCCTCGTCCCGCTCGCCGAGGCCAAGCACCTCCACGCCGCCCACCCCGTCTCCGTCCGCGCCATCCACCTCGGCCTTCTCCTCCCCCTTGTCTCCCTCCTCCTCTCCTTTCCTACCACCGTCTCCCTCCACTACCTCCTCAACCTCCTCCTGCGCCTGTCCACCAAGTTCAATACCCGAGCTCGCAACCCTGCGCCCTCCACCTGTTCGACGCTATGCCTTGCCGCTTTCCGTGAGATGGCGCACCACGGAGTTCCCCCTTTCATCAAGGAATGCAACCTCGTGCTCCGTGCGCTGCGTGATGAAGCCAGGTGGGATGACATGCGCTCGGTGTATGCAGAGATGCTTCAGCTTGGAATCGAGCCGAGCATTGTCACATACAACACGTTGTTGGATTCTTTCTTCAGGGAGGGTAGGGTGGATCAGGCTGCCAAGTTGCTCAGAGAGATGGAGGCCCGGCCTGGTGGATGCTTGCCGAGTGATGTCACATACAATGTGGTGATTAATGGGTTGGCCAGGAAAGGTGAGCTGGAGAAGGCAGCTCAGCTGGTTGACAGAATGCGGATGTCCAAGAAGGCGTCAGCTTTCACGTTTAATCCACTTATTACTGGGTATTTTGCAAGGGGTTCTGTTGAAAAGGCTGGAGCATTGCAGTTGGAGATGGAGAATGAGGGCATTGTACCCACGGTGGTGACATATAACACAATTATTCATGGAATGTTTAGAAGTGGTAATGTGGAGGCAGCTCGGATGAAGTTTGTGGAAATGAGAGCAATGGGATTACTTCCAGATTTGATTACATACAATTCTTTAATAAATGGGTATTGTAAGGCAGGGAATTTGAAGGAGGCACTTTGGTTATTTGGTGATTTGAAGCGTGCGGGGTTAGCCCCATCAGTTTTGACATATAACATTCTTTTAGATGGTTATTGTAGATTAGGTGATTTAGAGGAAGCTAGGAGATTCAAGCAGGAAATGGTAGAGCAGGGCTGTCAGCCTGATGTTTCTACATACACGATTCTCATGAATGGGTCTCGTAAGGTGAGGAATCTTGCGATGGTAAGAGAGTTCTTTGATGAAATGTTGAGCAAAGGTTTGCAGCCAGATTGCTTTGCCTATAATACAAGGATTTCTGCAGAGCTGATTCTAGGTTCTACTTCTGAGGCATTTCAGCTGACAGAGGTGATGATTTCAAGAGGAATTTCTTCTGATACAGTAACATACAATATTTTCCTTGATGGATTGTGCAAATCTGGTAACTTGAAAGATGCCTATGTGTTGTGGATGAAGATGGTCAGTGACGGTTTACAGCCTGACTGCATCACGTACACATGCTTGATTCACGCACATTGTGAAAGGGGGCGTCTGAGAGAAGCAAGGGATATTTTTGATGGAATGCTTGTAAGTGGGTTGCCACCTTCGGCTGTGACCTATACTGTTTTCATTCATGCATACTGTAGAAGAGGAAATCTTTACTCAGCATATGGTTGGTTTCAAAAGATGCTGGAGGAAGGAGTGCGACCTAATGAAGTAACATATAATGTGCTCATACATGCACTTTGCAGGATGGGGAGAACTAACTTAGCTTATCAGCATTTTCATGAGATGCTGGAAAGAGGATTGTCGCCAAACAAATACACGTACACTTTGCTGATTGATGGGAACTGTAAAGAAGGTAACTGGGAAGAGGCTATAAGGCTGTATTCTGAAATGCATCAGCATGGTATCCATCCAGATCACTGCACACATAATGCCTTGTTTAAGGGATTTGATGAAGGCCAGTCAAAACATGCAATTCAGTACATGGAGAATGTTGTTTTGGGTGCATAG
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| Protein seq | MLFSIHPCKSQAPAASAAAAAISGLRFVSSSSSSSSTALIPPPRTEESPFASLLASDPPPPEALREVLAAGDVHAALRGLPGLARQLFRWAEATPRGFPRCASAYAAVLVPLAEAKHLHAAHPVSVRAIHLGLLLPLVSLLLSFPTTVSLHYLLNLLLRLSTKFNTRARNPAPSTCSTLCLAAFREMAHHGVPPFIKECNLVLRALRDEARWDDMRSVYAEMLQLGIEPSIVTYNTLLDSFFREGRVDQAAKLLREMEARPGGCLPSDVTYNVVINGLARKGELEKAAQLVDRMRMSKKASAFTFNPLITGYFARGSVEKAGALQLEMENEGIVPTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELILGSTSEAFQLTEVMISRGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCERGRLREARDIFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGVRPNEVTYNVLIHALCRMGRTNLAYQHFHEMLERGLSPNKYTYTLLIDGNCKEGNWEEAIRLYSEMHQHGIHPDHCTHNALFKGFDEGQSKHAIQYMENVVLGA |
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| Function | Pentatricopeptide repeat-containing protein At1g22960, mitochondrial [UniProtKB/Swiss-Prot:P0C7Q9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0152600 | OsNip_12t0152600-01 | Chr12 | 2592552 | 2594898 | - | RAP2018-11-26 | ||
| CDS seq | ATGCTCTTCTCCATCCACCCCTGCAAATCCCAAGCTCCTGCCGCATCCGCCGCCGCCGCCGCCATCTCCGGCCTCCGCTTCGTCTCCTCGTCGTCGTCGTCGTCGTCGACGGCGCTGATTCCCCCGCCTCGGACAGAGGAGAGCCCGTTCGCGTCGCTGCTCGCGTCTGATCCCCCACCACCCGAGGCGCTCCGAGAGGTGCTCGCCGCTGGCGACGTCCACGCCGCGCTCCGCGGCCTCCCGGGCCTCGCGCGCCAGCTGTTCCGGTGGGCGGAGGCCACCCCGCGCGGCTTCCCGCGCTGCGCCTCCGCGTACGCCGCCGTCCTCGTCCCGCTCGCCGAGGCCAAGCACCTCCACGCCGCCCACCCCGTCTCCGTCCGCGCCATCCACCTCGGCCTTCTCCTCCCCCTTGTCTCCCTCCTCCTCTCCTTTCCTACCACCGTCTCCCTCCACTACCTCCTCAACCTCCTCCTGCGCCTGTCCACCAAGTTCAATACCCGAGCTCGCAACCCTGCGCCCTCCACCTGTTCGACGCTATGCCTTGCCGCTTTCCGTGAGATGGCGCACCACGGAGTTCCCCCTTTCATCAAGGAATGCAACCTCGTGCTCCGTGCGCTGCGTGATGAAGCCAGGTGGGATGACATGCGCTCGGTGTATGCAGAGATGCTTCAGCTTGGAATCGAGCCGAGCATTGTCACATACAACACGTTGTTGGATTCTTTCTTCAGGGAGGGTAGGGTGGATCAGGCTGCCAAGTTGCTCAGAGAGATGGAGGCCCGGCCTGGTGGATGCTTGCCGAGTGATGTCACATACAATGTGGTGATTAATGGGTTGGCCAGGAAAGGTGAGCTGGAGAAGGCAGCTCAGCTGGTTGACAGAATGCGGATGTCCAAGAAGGCGTCAGCTTTCACGTTTAATCCACTTATTACTGGGTATTTTGCAAGGGGTTCTGTTGAAAAGGCTGGAGCATTGCAGTTGGAGATGGAGAATGAGGGCATTGTACCCACGGTGGTGACATATAACACAATTATTCATGGAATGTTTAGAAGTGGTAATGTGGAGGCAGCTCGGATGAAGTTTGTGGAAATGAGAGCAATGGGATTACTTCCAGATTTGATTACATACAATTCTTTAATAAATGGGTATTGTAAGGCAGGGAATTTGAAGGAGGCACTTTGGTTATTTGGTGATTTGAAGCGTGCGGGGTTAGCCCCATCAGTTTTGACATATAACATTCTTTTAGATGGTTATTGTAGATTAGGTGATTTAGAGGAAGCTAGGAGATTCAAGCAGGAAATGGTAGAGCAGGGCTGTCAGCCTGATGTTTCTACATACACGATTCTCATGAATGGGTCTCGTAAGGTGAGGAATCTTGCGATGGTAAGAGAGTTCTTTGATGAAATGTTGAGCAAAGGTTTGCAGCCAGATTGCTTTGCCTATAATACAAGGATTTCTGCAGAGCTGATTCTAGGTTCTACTTCTGAGGCATTTCAGCTGACAGAGGTGATGATTTCAAGAGGAATTTCTTCTGATACAGTAACATACAATATTTTCCTTGATGGATTGTGCAAATCTGGTAACTTGAAAGATGCCTATGTGTTGTGGATGAAGATGGTCAGTGACGGTTTACAGCCTGACTGCATCACGTACACATGCTTGATTCACGCACATTGTGAAAGGGGGCGTCTGAGAGAAGCAAGGGATATTTTTGATGGAATGCTTGTAAGTGGGTTGCCACCTTCGGCTGTGACCTATACTGTTTTCATTCATGCATACTGTAGAAGAGGAAATCTTTACTCAGCATATGGTTGGTTTCAAAAGATGCTGGAGGAAGGAGTGCGACCTAATGAAGTAACATATAATGTGCTCATACATGCACTTTGCAGGATGGGGAGAACTAACTTAGCTTATCAGCATTTTCATGAGATGCTGGAAAGAGGATTGTCGCCAAACAAATACACGTACACTTTGCTGATTGATGGGAACTGTAAAGAAGGTAACTGGGAAGAGGCTATAAGGCTGTATTCTGAAATGCATCAGCATGGTATCCATCCAGATCACTGCACACATAATGCCTTGTTTAAGGGATTTGATGAAGGCCAGTCAAAACATGCAATTCAGTACATGGAGAATGTTGTTTTGGGTGCATAG
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| Protein seq | MLFSIHPCKSQAPAASAAAAAISGLRFVSSSSSSSSTALIPPPRTEESPFASLLASDPPPPEALREVLAAGDVHAALRGLPGLARQLFRWAEATPRGFPRCASAYAAVLVPLAEAKHLHAAHPVSVRAIHLGLLLPLVSLLLSFPTTVSLHYLLNLLLRLSTKFNTRARNPAPSTCSTLCLAAFREMAHHGVPPFIKECNLVLRALRDEARWDDMRSVYAEMLQLGIEPSIVTYNTLLDSFFREGRVDQAAKLLREMEARPGGCLPSDVTYNVVINGLARKGELEKAAQLVDRMRMSKKASAFTFNPLITGYFARGSVEKAGALQLEMENEGIVPTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELILGSTSEAFQLTEVMISRGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCERGRLREARDIFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGVRPNEVTYNVLIHALCRMGRTNLAYQHFHEMLERGLSPNKYTYTLLIDGNCKEGNWEEAIRLYSEMHQHGIHPDHCTHNALFKGFDEGQSKHAIQYMENVVLGA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.299608 | 1.304521 | 3.049276 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0133200 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g05640 | RBH | 0.729639 | 0.765704 | 0.651666 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0152600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0003520 | RBH | 0.403171 | 1.454596 | 1.392289 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0003760 | RBH | 0.047265 | 2.756526 | 0.947107 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0003770 | RBH | 0.463814 | 4.905252 | 1.843361 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0003590 | RBH | 0.026238 | 0.093995 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0003780 | RBH | 1.925748 | 7.601694 | 4.756740 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0045800 | RBH | 1.8306635 | 6.409914 | 4.0575495 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0003770 | RBH | 0.177755 | 0.500634 | 0.608991 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0050000 | RBH | 1.8422035 | 5.931136 | 7.537072 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0003550 | RBH | 0.091641 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0003770 | RBH | 0.268656 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0003780 | RBH | 2.586819 | 3.397943 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0003730 | RBH | 0.203225 | 0.0 | 0.253814 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0003670 | RBH | 0.129505 | 2.282364 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G003590 | RBH | 0.115431 | 1.303171 | 0.651614 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0003830 | RBH | 0.512397 | 5.075940 | 3.845910 |
