Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_12g0141000 | OGI:12005410 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr12:1986251-1989200 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AAGAAAACAAGCACCTGACTAGCAAAGCAAATACTTCAGATTTATACGCGTATGAGGGTACTAATGGTTGACGGTGACGCCTGGCGGCGAGCTCCGGCGCCGGCCACCTCACCGGCAGCGGAGGAGGCGGAGTTCCTCTGGGAGCTCCGCAAGTACGTCCTGCTTCTGGCCACGCTCGCCGCCACGGTCACCTACACGGCGGGGCTGGACCCGCCGGGCGGGTTCTGGACGGACAACGTGGGCGAGCTCCTCGCCGGCGACCCGGTGCTCCAGAAGACCTACCCTGGCCGCTACAAGGCCTTCTTCTACTGCAACGCTACCGCGTTCGTCGCCTCCCTCGTCATCGTCAACCTCCTCCTCGTCCGCTTCCTGTGCCGCCGCCGGTGGTGGCTGCGCGCGCTCCAGGCCGCGATGATACTCGACATGTTCGGCCTCATGGGGGCCTACGCCGCCGGCAGCAGCAGGGAGGCGGCCATGTCCGCCTACATCCTCGTTCTCGTCATCTTGGTCTGCTCCTACGTCTCCGCCCATGTCCTGCTCTACGGGCTGACGACGGCGCAGGTGAGCGCGCCGGACGCGCCGGAGCGGGTGGAGCGCGCGCGCAAGTACCTGCTCATCTTCGCGACTCTGGCGGCGACCGTGGCGTACCAAGCCGGGCTGAGCACGCCGGGCGGATTCTGGCTAGGCAGCCTTGAGAACCAGCACCTCGCCGGCGACCCCATGCTCCGCGGCAACCACCCGTACTGATTCATGGTGTTCTTCTACTTCAACACCACGGCGTTCGTCGCGTCGCTGGTCACCATCATGCTGCTCATGAGCAGGACCGTGTCGCGCCACGGGTTCAGGTCGAGCGCGCTCTGGGTGTGCGTGGGCGCGGCCATGGTCGGGCTCATGGGCGCCTTCGCCGCCGGCAGCTGCCGCAGCTTCAAGACGTCCATCTACGTCATCGCGTTGGTGGGCGCCGTCCTGCTCTACATTGCTATCCAGTTCATGGTGTTCATCAGCGAGCCCGTGAAGGATTGGCTCCACCGTGCTGGAGAGACGCTGCAAAAGTGCTTGAAATTGGATGAACTGGAGCAGCGAAATCAGCAGCAGATCACACTATCCAACCAAGGCAATGGCGACGCCTACCTTCTTCTCAAGAAATCTCGCATGTACTTGCTCCTGCTTGGGATTCTCGCGGCGAGCGTCACATACCAAGCAGGACTGAACCCGCCGGGAGGCTTCTGGCAAAGCGATGGCACCGACGGATACCGCCATTACCTCGCCGGCGATCCGGTTCTTCACATCACGTATCACCGGCGATACATGGTGTTCTTCTACTCCAACGCCACCGCCTTCATCGCGTCGCTGGTCATCCTCATCCTCCTCTTGAGCAACATGATCAGCACGCAGGGGATCAAGTACTGTGCGCTGCAGGTCGCCATGATTCTGAACTTGTTTGGCCTGATCGGAGCTTACGCCGCTGGGAGCTGCAGGCAGGCGTCCAAATCCGTGTACGTCTCGGTTCTTGTTTTGCCGGTGTTTCTCTATGTTGGTATCCATGTCTTGGTGTTCATGCTCGAAGTGTCTCCGACATGGGCGACATGGCGAGTAGAAGTGAGGGAGAAGCTGAAGCAATGTATGCCTGAATGGCTCAAGAATCTGCTTGAGTTGGAGAAGCATGTCGAGGAGGAAGAGGAAGAGTGGAAGCTGGAGAAGAGGCGAAAGCTCCTACTCCTCGTTGCGATTCTTGCAGCAAGCCTCACCTACGAAGCAGGCATGAACCCACCGGGTGGTTTCTGGCAGGAGAAGAAGTCCGGCCATGTCGGTGACCCGGTGCTCAACAACGACAACTACCGGCACCGCTACCTGGCGTTCTTCTTCTGCAACACCACGGCGTTCGTCGCGTCCTTGGCCATCATCATGCTGCTGGTGAACCGGAAGCTCTCGGCGAGAGGAATCCGGTCGTACGCGCTGCGGGTGTGCGTGATCCTTGTCCTCGTCGGGCTCATGGGGGCCTTCGCCGCCGGCAGCTGCAGGAAGGTGAAGACGTCCATCTATGTCTTCGTCTTGGTCCTCGCCGTTCTGCTCTGCATCGCGTTCCAGGTCGCACTGGTCGTGTCGGGGTCGCTGCGACGTCTCGTCAACAGCCTCCTCTCCAAGCTAGGGGCGCCGCTTGAGGAGGACGCCGGTGAGCGGCTGCCGCACACGGCCGCCGACGGCGGCGACGGCGAGCCTCGCGATCTCTGGGACGAGAAGCTCCCCAAATACTTGCTGCTCCTCGCAGCGCTCGCGGCGGCCGTCACCTACCAAGCCGCGATGAGCCCGCCCGGTGGCCTCTGGGATGACGGCCAAACCGAGCACATCGTCGGTGACCCTGTTCTCCTGACCAACTATGCACGTCGCTACAAGGTCTTCTTCTACTGCAACGCGACGTCGTTCATGGCGTCGCTGGTGATAATGGTGTTGCTGCTGATCAAGAGGGTGAGCAACACCCAGCCGGCGCTCCTGGCGCTGCACGCCGCCATGATACTGGACCTGTTCGGCCTCATGGGCGTGTACGCCGCCGGGAGCTGCAGGAGGGTGACGACGTCGGCTTACATCTTGGCACTGCTCGTCGGGGTTTCGGCGTACATTGTTGTTCTTGTGGTGGTGTCCGTTGGTGTGGCGAGATGGATGAAGAAGGTGATGGACAAGGTGGGGGAGAAGCTCACACACTGCTTCTCCTTTGAAGATTTGTAGAGCCAAAGCCTGACTCGATGGCCCTGATGGATGGTGATCCTCTTTGTACAGTCACAACTCTGCCTGCAGAAGGAGGGTTTTTCCTAGGATTTGTACATAGTTCTATGTTGAATTTGATTTCCATATGTGTAGGAATTTCTAGTTTACTTGGTTTTTTTCATGTACATTGTAGTTTGTTTTTGAATTGTTGACAGCTTCTAGTTGCAATGCATGGAACCTTTTGTAC
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| CDS seq | ATGAGGGTACTAATGGTTGACGGTGACGCCTGGCGGCGAGCTCCGGCGCCGGCCACCTCACCGGCAGCGGAGGAGGCGGAGTTCCTCTGGGAGCTCCGCAAGTACGTCCTGCTTCTGGCCACGCTCGCCGCCACGGTCACCTACACGGCGGGGCTGGACCCGCCGGGCGGGTTCTGGACGGACAACGTGGGCGAGCTCCTCGCCGGCGACCCGGTGCTCCAGAAGACCTACCCTGGCCGCTACAAGGCCTTCTTCTACTGCAACGCTACCGCGTTCGTCGCCTCCCTCGTCATCGTCAACCTCCTCCTCGTCCGCTTCCTGTGCCGCCGCCGGTGGTGGCTGCGCGCGCTCCAGGCCGCGATGATACTCGACATGTTCGGCCTCATGGGGGCCTACGCCGCCGGCAGCAGCAGGGAGGCGGCCATGTCCGCCTACATCCTCGTTCTCGTCATCTTGGTCTGCTCCTACGTCTCCGCCCATGTCCTGCTCTACGGGCTGACGACGGCGCAGGTGAGCGCGCCGGACGCGCCGGAGCGGGTGGAGCGCGCGCGCAAGTACCTGCTCATCTTCGCGACTCTGGCGGCGACCGTGGCGTACCAAGCCGGGCTGAGCACGCCGGGCGGATTCTGGCTAGGCAGCCTTGAGAACCAGCACCTCGCCGGCGACCCCATGCTCCGCGGCAACCACCCGTACTGA
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| Protein seq | MRVLMVDGDAWRRAPAPATSPAAEEAEFLWELRKYVLLLATLAATVTYTAGLDPPGGFWTDNVGELLAGDPVLQKTYPGRYKAFFYCNATAFVASLVIVNLLLVRFLCRRRWWLRALQAAMILDMFGLMGAYAAGSSREAAMSAYILVLVILVCSYVSAHVLLYGLTTAQVSAPDAPERVERARKYLLIFATLAATVAYQAGLSTPGGFWLGSLENQHLAGDPMLRGNHPY |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0141000 | OsNip_12t0141000-01 | Chr12 | 1986251 | 1989200 | + | RAP2018-11-26 | ||
| CDS seq | ATGAGGGTACTAATGGTTGACGGTGACGCCTGGCGGCGAGCTCCGGCGCCGGCCACCTCACCGGCAGCGGAGGAGGCGGAGTTCCTCTGGGAGCTCCGCAAGTACGTCCTGCTTCTGGCCACGCTCGCCGCCACGGTCACCTACACGGCGGGGCTGGACCCGCCGGGCGGGTTCTGGACGGACAACGTGGGCGAGCTCCTCGCCGGCGACCCGGTGCTCCAGAAGACCTACCCTGGCCGCTACAAGGCCTTCTTCTACTGCAACGCTACCGCGTTCGTCGCCTCCCTCGTCATCGTCAACCTCCTCCTCGTCCGCTTCCTGTGCCGCCGCCGGTGGTGGCTGCGCGCGCTCCAGGCCGCGATGATACTCGACATGTTCGGCCTCATGGGGGCCTACGCCGCCGGCAGCAGCAGGGAGGCGGCCATGTCCGCCTACATCCTCGTTCTCGTCATCTTGGTCTGCTCCTACGTCTCCGCCCATGTCCTGCTCTACGGGCTGACGACGGCGCAGGTGAGCGCGCCGGACGCGCCGGAGCGGGTGGAGCGCGCGCGCAAGTACCTGCTCATCTTCGCGACTCTGGCGGCGACCGTGGCGTACCAAGCCGGGCTGAGCACGCCGGGCGGATTCTGGCTAGGCAGCCTTGAGAACCAGCACCTCGCCGGCGACCCCATGCTCCGCGGCAACCACCCGTACTGA
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| Protein seq | MRVLMVDGDAWRRAPAPATSPAAEEAEFLWELRKYVLLLATLAATVTYTAGLDPPGGFWTDNVGELLAGDPVLQKTYPGRYKAFFYCNATAFVASLVIVNLLLVRFLCRRRWWLRALQAAMILDMFGLMGAYAAGSSREAAMSAYILVLVILVCSYVSAHVLLYGLTTAQVSAPDAPERVERARKYLLIFATLAATVAYQAGLSTPGGFWLGSLENQHLAGDPMLRGNHPY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.165247 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0144900 | RBH | 0.0 | 0.300726 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g04830 | SBH | 0.0 | 0.197982 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0141000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0002820 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0003040 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0003050 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0002840 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0003070 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0035300 | RBH | 0.182355 | 5.048063 | 0.032585 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0003050 | RBH | 0.0 | 0.040534 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0037600 | RBH | 0.422836 | 11.104747 | 0.050288 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0002830 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0003050 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0003080 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0003010 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0002960 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G002870 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0003100 | RBH | 0.0 | 0.0 | 0.0 |
