Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_12g0139300 | OGI:12005150 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr12:1906051-1909152 | ||||||||
| Gene Symbol | CPD2, OsCPD2, CYP90A4, CYP90A4/OsCPD2 | ||||||||||
| DNA seq | GCTTGTAACCGGTATCCACAGCATTTTAGGTCATTTTACAAGCAGCACAACTCTGCTGCCTACTGTTTACATACCAGGTTACAGATCAACAAAAAAGAGGGAAATGCACTACCTATGCGAGAACTATTTTTCTATAAATTTATCTATGTTTAGTCTTTCTTCCAAGATAAGAGCAGCTGCAAAACAATCTAACGTCAGCAAATTGATTCTGAAAGCAGCCGAAGATTGATAGGGTATCCTTTGAGAGTTCGTGTGGTGGGGAAGAAGACAAGTCTATCTTCTTCGGTTTCTTCCCAGCTGCAAATTGATTGGTCAAGTTGTTATGGAATCAGACTGGTGTCCAATTTGGATCACAATTGTGGAAAATTCATTTGCAGATTATCTACACCTTTCTGGCTAGCAAGATAGCGATTGAATTAGAGAGATTAAGGTGGCTCACCTAAAGCGCGTTACAAGATGATGGAGGAAGATAGAAACGACAACCCGGGCAAGCTCATAGCCAGGACACAACCGAGGTCCACCACCAAATGGAGTAAATATATTGGCCCCTACCGCATTCTGAAGTTTATTGTTGATCTGCACAGGAACAAATTTGTTGCAGATATCTTCAGCGTGCATTTTACTTTTGTAGCACAGGACATAATTGAATAAGTAGACCCAATAGCAATAACACAGAGCCCCTAGGAGTACCTGCCATCTCCAAGGGTTAAATGTCCGAGCATTCTCGTAGTGTTCATTATTAAGGTGCACAGCTCGGAATGAAGCAAAAATCTTGCATCCCTTTGGAATTGTGTAATCTAAGAAACAAAGAAAAATGCCATACATAATGAGCATTTCTGATGAAAAATGTATGGGGACTTCTTTTAGATAATGAATAAAATGTACGTGGGCTTAGTATAGTTTATATTGAAATACCTTTATAATGAATATCAGTGTTTGCTCGCCTGAATACTCCACTAATAATGTTACCCACACGGAGTGTCTCATTTATCACCTGAAGAAATGTTAACCCTTCATTTAATCATGATGTGAGTAAACCAACTGTACTGTCTCAAAGGTTCAGTTAAGAGATGCCATTTACACTAGATGGATTCGTGCTGTTGGCATGATATTTTTAGGAGTAGCTAATTTTTAAGAAAACAAGGGCTTTCCAACTTACACATTGAGTAAATGGCATGGACTTGTAATCGCTCCACTCTAATGGTTGGTTTTTCCCTTTCATATCCCTGATATTGGCATGCTCTTCCTGTAAAATCAGCAAGATATCTGGAATCAGTTACACATGTAGTGAAGTAAAAAATACCACTTGGACCAATCTTGAGGACTCTCAAAGCTTAACATATTGGAAACAAAACTTGTACCAGGAAAAGTCATAAAGTTCAGATTTCTAAGATTTGGACCTATTGTGATATTATTGCTACGATTCTCTCACTTTGTTGTTAGACTGAGGAACCTAGCACTCATCAATGCAAGTAAATAAAATGAGAAAAAAAAAAAAGGAAACCAGAGTACTGACTGAAGTGAAGATTCATTCTTACACAGTTAAACTAAAAGAAGTCAGGACTCAAGAACATAAATGATTCGAGTCAATAATAAATTAATACTCAGGATCAAGTATTCAAGTCAATAACAAACCAGGAACAAAGCTGTAGTTGAACTTGACTAAAAACAACAGACCGGAAATAGAAAGTAGAAACTTCTCTTTTGGACAGAATTGGTGTGAAAGATAGTCTAACAACCATATTTTTAACAATTAACACCCAACTATAATAAATGAAATTCCTTCCTATTTCAGCCGTTATTTGACAATTGACAGCACCTGGTACCTACTACCGCACGTGTATACAAGAATTGACAATTACCAAACAACTAATTTGAATAGTTTTATACCTTGAGCTCAGCTAGCGCAGCAGGCGTCTCAGTGAGGAACTTGACCGCGAGCGTCATGAGCACGGACGTAGTCTCATACCCAGCCACCAGCAGAGAAAGGCAGAAATCCACCATCTCTTCCTCCGAGAAGCTGCCACCCTCCGCCTGAAGAAGCTCCTCCACCATGTCCTTCTTCTCCTTCTTCCCCTCATCATCCCCAATGGAGCCACCATTCTCCGCTTTCTCCTCCATCCTCTTCTTTATCACCTCCCGCAGTGCACCGGCCACCTTCTTCCTCGCCTGCAGGAATCAAATCGTGCAATGCCACATTTTTATGAGAGATATAGGAGTACATCAATAGCTTACGCCAATTTGTTGTTAGGCAAGATGCATAGGGAAAGAAAAAAAAATGAATGGAGGCAAAAGGACGAGCACCTTGAGGGCCTGGCCGTAGGTGGTAAAAGGGAGGAAGTAGGCGAGAGGAAAGGGGATGGAGAAGAAGCCGTCGATGAGCTTGACGTACTCGCGGCGGAGGCTCTCGGTCCACGGTCCCGGCTCGATGCTGACGAGCTGCTTGACGGTGAGGTTGAAGGTGATCTTCTTGGCCTCGTCCATGAGGCGGACGGTGGCGGCGGGCTCCCACTGGCGCATGGTGGCGAGCACGAGGCGGTCGATGTGCGCGAGGAGGGGCGGCGACGCGGGGCGGCCGAGGCGGGTGAGGGTGAGGGAGTGGAGCCGCTTGTGCGCGGCGCCGCGGGTGAGGAGCAGGGAGCGCGCGCCGAGGAGCGTGGCGATGGAGGACGGGTAGCTGGAGTGGACGGCGCGGCCCTCGGCGGCGAGGAGGAGGCGGTTGAAGGCCGGGTCGGCGGAGAACACGGTGCGCTCGCCGAAGACGTGGGTGGTGAACACGCCGCCGTGGCGCGCCACGCGCTCGTCGATGAACGGCTCCGGGTTGGGCGTCTTGTACGCCGAGATGAGCCGCAGCGTCTCGCCAATCAGAGGCAGGCCCGTGCTCCCCGGCGGCATCCGCGCCCTCTTCCCCAGCCTCCCGGCGGCGGGGCCCCCGAGGAGGAGGAGCCATCTGAGCGCCATGGCAACCACGACGGCGGCGGCGGCCGCGGCGAGGAGGAGCAGCGCGGCCGCGGCCATGGCGGCGTGGCCGTGCGCGTCGTGGGCAAGGAGCGAGTGAGAATGAGTGAGATTGATGAGGCTCCGACAACCAGAGGATCTGCT
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| CDS seq | ATGGCCGCGGCCGCGCTGCTCCTCCTCGCCGCGGCCGCCGCCGCCGTCGTGGTTGCCATGGCGCTCAGATGGCTCCTCCTCCTCGGGGGCCCCGCCGCCGGGAGGCTGGGGAAGAGGGCGCGGATGCCGCCGGGGAGCACGGGCCTGCCTCTGATTGGCGAGACGCTGCGGCTCATCTCGGCGTACAAGACGCCCAACCCGGAGCCGTTCATCGACGAGCGCGTGGCGCGCCACGGCGGCGTGTTCACCACCCACGTCTTCGGCGAGCGCACCGTGTTCTCCGCCGACCCGGCCTTCAACCGCCTCCTCCTCGCCGCCGAGGGCCGCGCCGTCCACTCCAGCTACCCGTCCTCCATCGCCACGCTCCTCGGCGCGCGCTCCCTGCTCCTCACCCGCGGCGCCGCGCACAAGCGGCTCCACTCCCTCACCCTCACCCGCCTCGGCCGCCCCGCGTCGCCGCCCCTCCTCGCGCACATCGACCGCCTCGTGCTCGCCACCATGCGCCAGTGGGAGCCCGCCGCCACCGTCCGCCTCATGGACGAGGCCAAGAAGATCACCTTCAACCTCACCGTCAAGCAGCTCGTCAGCATCGAGCCGGGACCGTGGACCGAGAGCCTCCGCCGCGAGTACGTCAAGCTCATCGACGGCTTCTTCTCCATCCCCTTTCCTCTCGCCTACTTCCTCCCTTTTACCACCTACGGCCAGGCCCTCAAGGCGAGGAAGAAGGTGGCCGGTGCACTGCGGGAGGTGATAAAGAAGAGGATGGAGGAGAAAGCGGAGAATGGTGGCTCCATTGGGGATGATGAGGGGAAGAAGGAGAAGAAGGACATGGTGGAGGAGCTTCTTCAGGCGGAGGGTGGCAGCTTCTCGGAGGAAGAGATGGTGGATTTCTGCCTTTCTCTGCTGGTGGCTGGGTATGAGACTACGTCCGTGCTCATGACGCTCGCGGTCAAGTTCCTCACTGAGACGCCTGCTGCGCTAGCTGAGCTCAAGGAAGAGCATGCCAATATCAGGGATATGAAAGGGAAAAACCAACCATTAGAGTGGAGCGATTACAAGTCCATGCCATTTACTCAATGTGTGATAAATGAGACACTCCGTGTGGGTAACATTATTAGTGGAGTATTCAGGCGAGCAAACACTGATATTCATTATAAAGATTACACAATTCCAAAGGGATGCAAGATTTTTGCTTCATTCCGAGCTGTGCACCTTAATAATGAACACTACGAGAATGCTCGGACATTTAACCCTTGGAGATGGCAGATCAACAATAAACTTCAGAATGCGGTAGGGGCCAATATATTTACTCCATTTGGTGGTGGACCTCGGTTGTGTCCTGGCTATGAGCTTGCCCGGGTTGTCGTTTCTATCTTCCTCCATCATCTTGTAACGCGCTTTAGCTGGGAAGAAACCGAAGAAGATAGACTTGTCTTCTTCCCCACCACACGAACTCTCAAAGGATACCCTATCAATCTTCGGCTGCTTTCAGAATCAATTTGCTGA
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| Protein seq | MAAAALLLLAAAAAAVVVAMALRWLLLLGGPAAGRLGKRARMPPGSTGLPLIGETLRLISAYKTPNPEPFIDERVARHGGVFTTHVFGERTVFSADPAFNRLLLAAEGRAVHSSYPSSIATLLGARSLLLTRGAAHKRLHSLTLTRLGRPASPPLLAHIDRLVLATMRQWEPAATVRLMDEAKKITFNLTVKQLVSIEPGPWTESLRREYVKLIDGFFSIPFPLAYFLPFTTYGQALKARKKVAGALREVIKKRMEEKAENGGSIGDDEGKKEKKDMVEELLQAEGGSFSEEEMVDFCLSLLVAGYETTSVLMTLAVKFLTETPAALAELKEEHANIRDMKGKNQPLEWSDYKSMPFTQCVINETLRVGNIISGVFRRANTDIHYKDYTIPKGCKIFASFRAVHLNNEHYENARTFNPWRWQINNKLQNAVGANIFTPFGGGPRLCPGYELARVVVSIFLHHLVTRFSWEETEEDRLVFFPTTRTLKGYPINLRLLSESIC |
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| Function | Cytochrome P450 90A4 [UniProtKB/Swiss-Prot:Q5CCK1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0139300 | OsNip_12t0139300-01 | Chr12 | 1906051 | 1909152 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCCGCGGCCGCGCTGCTCCTCCTCGCCGCGGCCGCCGCCGCCGTCGTGGTTGCCATGGCGCTCAGATGGCTCCTCCTCCTCGGGGGCCCCGCCGCCGGGAGGCTGGGGAAGAGGGCGCGGATGCCGCCGGGGAGCACGGGCCTGCCTCTGATTGGCGAGACGCTGCGGCTCATCTCGGCGTACAAGACGCCCAACCCGGAGCCGTTCATCGACGAGCGCGTGGCGCGCCACGGCGGCGTGTTCACCACCCACGTCTTCGGCGAGCGCACCGTGTTCTCCGCCGACCCGGCCTTCAACCGCCTCCTCCTCGCCGCCGAGGGCCGCGCCGTCCACTCCAGCTACCCGTCCTCCATCGCCACGCTCCTCGGCGCGCGCTCCCTGCTCCTCACCCGCGGCGCCGCGCACAAGCGGCTCCACTCCCTCACCCTCACCCGCCTCGGCCGCCCCGCGTCGCCGCCCCTCCTCGCGCACATCGACCGCCTCGTGCTCGCCACCATGCGCCAGTGGGAGCCCGCCGCCACCGTCCGCCTCATGGACGAGGCCAAGAAGATCACCTTCAACCTCACCGTCAAGCAGCTCGTCAGCATCGAGCCGGGACCGTGGACCGAGAGCCTCCGCCGCGAGTACGTCAAGCTCATCGACGGCTTCTTCTCCATCCCCTTTCCTCTCGCCTACTTCCTCCCTTTTACCACCTACGGCCAGGCCCTCAAGGCGAGGAAGAAGGTGGCCGGTGCACTGCGGGAGGTGATAAAGAAGAGGATGGAGGAGAAAGCGGAGAATGGTGGCTCCATTGGGGATGATGAGGGGAAGAAGGAGAAGAAGGACATGGTGGAGGAGCTTCTTCAGGCGGAGGGTGGCAGCTTCTCGGAGGAAGAGATGGTGGATTTCTGCCTTTCTCTGCTGGTGGCTGGGTATGAGACTACGTCCGTGCTCATGACGCTCGCGGTCAAGTTCCTCACTGAGACGCCTGCTGCGCTAGCTGAGCTCAAGGAAGAGCATGCCAATATCAGGGATATGAAAGGGAAAAACCAACCATTAGAGTGGAGCGATTACAAGTCCATGCCATTTACTCAATGTGTGATAAATGAGACACTCCGTGTGGGTAACATTATTAGTGGAGTATTCAGGCGAGCAAACACTGATATTCATTATAAAGATTACACAATTCCAAAGGGATGCAAGATTTTTGCTTCATTCCGAGCTGTGCACCTTAATAATGAACACTACGAGAATGCTCGGACATTTAACCCTTGGAGATGGCAGATCAACAATAAACTTCAGAATGCGGTAGGGGCCAATATATTTACTCCATTTGGTGGTGGACCTCGGTTGTGTCCTGGCTATGAGCTTGCCCGGGTTGTCGTTTCTATCTTCCTCCATCATCTTGTAACGCGCTTTAGCTGGGAAGAAACCGAAGAAGATAGACTTGTCTTCTTCCCCACCACACGAACTCTCAAAGGATACCCTATCAATCTTCGGCTGCTTTCAGAATCAATTTGCTGA
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| Protein seq | MAAAALLLLAAAAAAVVVAMALRWLLLLGGPAAGRLGKRARMPPGSTGLPLIGETLRLISAYKTPNPEPFIDERVARHGGVFTTHVFGERTVFSADPAFNRLLLAAEGRAVHSSYPSSIATLLGARSLLLTRGAAHKRLHSLTLTRLGRPASPPLLAHIDRLVLATMRQWEPAATVRLMDEAKKITFNLTVKQLVSIEPGPWTESLRREYVKLIDGFFSIPFPLAYFLPFTTYGQALKARKKVAGALREVIKKRMEEKAENGGSIGDDEGKKEKKDMVEELLQAEGGSFSEEEMVDFCLSLLVAGYETTSVLMTLAVKFLTETPAALAELKEEHANIRDMKGKNQPLEWSDYKSMPFTQCVINETLRVGNIISGVFRRANTDIHYKDYTIPKGCKIFASFRAVHLNNEHYENARTFNPWRWQINNKLQNAVGANIFTPFGGGPRLCPGYELARVVVSIFLHHLVTRFSWEETEEDRLVFFPTTRTLKGYPINLRLLSESIC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.463477 | 1.837187 | 1.838546 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0143200 | RBH | 0.138876 | 0.589741 | 0.339429 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g04480 | RBH | 0.284217 | 1.195328 | 0.424925 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0139300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0002650 | RBH | 0.051591 | 0.000000 | 2.866550 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0002880 | RBH | 0.129176 | 4.586803 | 1.691222 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0002890 | RBH | 0.211036 | 5.912539 | 7.850230 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0002680 | RBH | 0.087364 | 0.225610 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0002920 | RBH | 2.024029 | 11.755780 | 2.752731 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0033700 | RBH | 6.180498 | 4.148709 | 1.824454 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0002900 | RBH | 0.296119 | 0.160317 | 0.257169 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0035700 | RBH | 4.8138805 | 1.5230725 | 5.5046845 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0002680 | RBH | 0.297230 | 0.110961 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0002900 | RBH | 0.091705 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0002930 | RBH | 3.552785 | 9.533342 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0002860 | RBH | 0.375868 | 0.0 | 0.438137 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0002840 | RBH | 0.495588 | 5.051036 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G002740 | RBH | 0.330559 | 4.901138 | 1.338020 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0002980 | RBH | 0.330237 | 2.981189 | 3.443192 |
