Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_12g0136600 | OGI:12004850 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr12:1776606-1777703 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GAATTTTGACAATAGGGTATAACTAGATATTCTAGCAAATGAAGACCCTGCGGCTTAACATGGAGTTAATAACAAGGACAGATACTTGGTTCACTGTCATGACAAGACTGTAGGAAAATAATACATAGTAATAGATTTTCAGTCTACCAAGATACTATGTTGTAAGACAATGTAATCAACAATCAGCGCGTTAGAACAGTAAACCACAAAAAAATATACGCATGTTCCTCTACTTTTGTAGAAAGAAAAGATAGGTGGTACTGAATTTCCTGGAAGGCATAGGCTCTCCTGAAATTGATCATGTGCTAATTTTTTTTCTACCGGTCACTAGAATTACAGAGCTCCACCAAAATGCCATGAAAGTGCTTGTTTTTCCAGATTTCTTGGAGGAACTCCAAGTTTATGAGCCCACTGCGCGCATCACAATATCCACAAACATTGTGTTTGGTTCATTGCTTCAACTTGCCACACCGTACTTTAGGCTGCCACACCTCCTTAGCCTTGGCAATGTTAGTTAAGAACCAAACAGCCCCTAAAATCACATGAATGAAGAAACATCACCTGAACTCAGGCCCTTCATACTTGTCTTCCCCAGCGTCGCCAGCAAACGGGTGATAACAAGCATTAGTAACATCATAGTCAGCAGAGCCGCCATCACCTTCATCTGCAAACGCGCGGCAGTCGAACCGCATCACCGGCTTCACATCAGGCTTACTGACGAACACCTTCATGAGCGCGTCCCTGGGCAGGGGCTCCTCCCCTTCGAACCGCAGCGGCTCGAGCACCGCCGACACGAGGACCTCCTCGGAAGCATCCCGGCGGCGCAGGAGCACTTCCTGCCCGCGCGGCGGGTCCGACACGGTGGCGAAGTCGGGAATGTCCTGCGAGAACCAGGGGGAAGTGAGTGGCGCTGGATTGGGGGCGGGAGGATGCGGTGGTGGGTACCTGGGATTGGAGCGACGGGGGAGAGGAGGGGGTGGAGGAGGAGAGCTCATGCGCGATCTCGGCGCGGACGGCGGCCAGGACGCCGCCGTTGGCGCCGCCACGGCGGAGGGCGGACGCGGCCAGGCGGCGCAGCAACATCACGCCGGAATCATT
More
|
||||||||||
| CDS seq | ATGAGCTCTCCTCCTCCACCCCCTCCTCTCCCCCGTCGCTCCAATCCCAGGTACCCACCACCGCATCCTCCCGCCCCCAATCCAGCGCCACTCACTTCCCCCTGGTTCTCGCAGGACATTCCCGACTTCGCCACCGTGTCGGACCCGCCGCGCGGGCAGGAAGTGCTCCTGCGCCGCCGGGATGCTTCCGAGGAGGTCCTCGTGTCGGCGGTGCTCGAGCCGCTGCGGTTCGAAGGGGAGGAGCCCCTGCCCAGGGACGCGCTCATGAAGGTGTTCGTCAGTAAGCCTGATGTGAAGCCGGTGATGCGGTTCGACTGCCGCGCGTTTGCAGATGAAGGTGATGGCGGCTCTGCTGACTATGATGTTACTAATGCTTGTTATCACCCGTTTGCTGGCGACGCTGGGGAAGACAAGTATGAAGGGCCTGAGTTCAGGTGA
More
|
||||||||||
| Protein seq | MSSPPPPPPLPRRSNPRYPPPHPPAPNPAPLTSPWFSQDIPDFATVSDPPRGQEVLLRRRDASEEVLVSAVLEPLRFEGEEPLPRDALMKVFVSKPDVKPVMRFDCRAFADEGDGGSADYDVTNACYHPFAGDAGEDKYEGPEFR |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0136600 | OsNip_12t0136600-01 | Chr12 | 1776606 | 1777703 | - | RAP2018-11-26 | ||
| CDS seq | ATGAGCTCTCCTCCTCCACCCCCTCCTCTCCCCCGTCGCTCCAATCCCAGGTACCCACCACCGCATCCTCCCGCCCCCAATCCAGCGCCACTCACTTCCCCCTGGTTCTCGCAGGACATTCCCGACTTCGCCACCGTGTCGGACCCGCCGCGCGGGCAGGAAGTGCTCCTGCGCCGCCGGGATGCTTCCGAGGAGGTCCTCGTGTCGGCGGTGCTCGAGCCGCTGCGGTTCGAAGGGGAGGAGCCCCTGCCCAGGGACGCGCTCATGAAGGTGTTCGTCAGTAAGCCTGATGTGAAGCCGGTGATGCGGTTCGACTGCCGCGCGTTTGCAGATGAAGGTGATGGCGGCTCTGCTGACTATGATGTTACTAATGCTTGTTATCACCCGTTTGCTGGCGACGCTGGGGAAGACAAGTATGAAGGGCCTGAGTTCAGGTGA
More
|
|||||||
| Protein seq | MSSPPPPPPLPRRSNPRYPPPHPPAPNPAPLTSPWFSQDIPDFATVSDPPRGQEVLLRRRDASEEVLVSAVLEPLRFEGEEPLPRDALMKVFVSKPDVKPVMRFDCRAFADEGDGGSADYDVTNACYHPFAGDAGEDKYEGPEFR |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0140100 | RBH | 1.141637 | 0.169573 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g04210 | RBH | 0.173766 | 0.174827 | 0.162203 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0136600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0002450 | RBH | 0.202966 | 2.803566 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0002660 | RBH | 0.0 | 0.0 | 0.341483 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0002690 | RBH | 0.0 | 0.0 | 1.470543 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0002480 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0002750 | RBH | 0.0 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0031100 | RBH | 1.313535 | 2.026694 | 3.053372 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0002720 | RBH | 0.0 | 0.309752 | 0.167838 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0033100 | RBH | 1.329769 | 1.430393 | 7.405526 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0002510 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0002730 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0002750 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0002680 | RBH | 0.000000 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0002660 | RBH | 0.000000 | 2.578671 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G002560 | RBH | 0.167325 | 1.423844 | 1.116040 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0002810 | RBH | 0.000000 | 0.0 | 0.0 |
