Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_12g0125000 | OGI:12003600 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr12:1200746-1201965 | ||||||||
| Gene Symbol | MYB11, OsMyb11, Myb11, OsMYB60, MYB60, DLN254, R2R3-MYB, OsDLN254, OsMYB2 | ||||||||||
| DNA seq | ACGTATCGAATGTGACAGTGTTTTCTTTCATTACTTGAGCTAATTAAAACATCATTGGGACGGAGCAGCAACCGTCGGAGAGGTCCATGAGGTCGGCGACCTGCTCCGCCGCCGCCTCGTCGAACAGCCACTTCTCGATCGATGACAGCGGCGGCGCTGCCTGGTTCATCAGCTGCTGCTTGCTCTCGTCGCCGTAGCCGCCGCCATAGCCGCCGTACTCCATGAACGACGCCGGCTGCTGCTGCTGGTGCTGCTGATGAACGTCGAAGCAGCAGTCCAGGTCGGCGCCGGACATGCAGTCGAAGGACGACAGCAAGGGGTTGCCGCCGACATCGACGGCGGGCTTGACGTCGTCGTAATAGCCGCTGTCATAGTGCTGCAGCGGTGGCGGCGGCGGCGACGGGGAGTTGGTCTTCATGAAGCCGTCGAGCAGCTTGGAGATGTTGTCCATGCTGGAGGCGTATGAGGAGGATGGGCAGTCGGCGAAGGGGGAGCGCCTAGCAATGGCTGCCATCTGGGTGACATCGGAGTTGCTGCTCACCGTGTAGCTACCGCCGGCGGCGGAGGGGAAGGTGGCGTCGGCGAAGATGGGGTGGCGGTTGGAGGATGAAGTGGAGTTGGCGGCGGCGGCGAGCTTCTTCTTGAGGTGGGTGTTCCAGTAGTTCTTGATGTCGTTGTCGGTGCGCTGGGGGAGGTAGGAGGCGATGGCGGCCCAGCGGTTGCCGAGAAGCGACTGGAGGTGGACGATGATCCCCTCCTCGTGCGCCGTGAAGTTGCCGCGCTTTATCCCCGGCCGCAGGTAGTTCGTCCACCGCAGCCTGCAGCTCTTGCTGCACCTCATCAGCCCTGCATCCATCCATCCACCCACAGCTTCAGCTTCTTCTCAGTTCATCATCGATCACCATGGCTACTTGGCTAGCTATAGTTCATCTACAAAAGAAAGTAAGAAACTACACAGAATTGGGGAATTAGGACGTACCAGTGTTGATGGGAACCGATCTCCAGTTGCCGGGGCCGTGTTCTTGGATGTAGGAGACGAGGATGATGTCCTCCTCGGGCGTCCATGGCCCCTTCTTGATCCCCTCCTTGTCGCAGCACGGCGGCCGGCCCATGGCTACAATTCCTCACTCACTAATTAACTCTGATCCTTCCCGGATCGATCGATCGAGCTAACTACTCTTTCTGGAAGCTGCAGCTAGCTGATCGATCGATCGGTCGTC
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| CDS seq | ATGGGCCGGCCGCCGTGCTGCGACAAGGAGGGGATCAAGAAGGGGCCATGGACGCCCGAGGAGGACATCATCCTCGTCTCCTACATCCAAGAACACGGCCCCGGCAACTGGAGATCGGTTCCCATCAACACTGGGCTGATGAGGTGCAGCAAGAGCTGCAGGCTGCGGTGGACGAACTACCTGCGGCCGGGGATAAAGCGCGGCAACTTCACGGCGCACGAGGAGGGGATCATCGTCCACCTCCAGTCGCTTCTCGGCAACCGCTGGGCCGCCATCGCCTCCTACCTCCCCCAGCGCACCGACAACGACATCAAGAACTACTGGAACACCCACCTCAAGAAGAAGCTCGCCGCCGCCGCCAACTCCACTTCATCCTCCAACCGCCACCCCATCTTCGCCGACGCCACCTTCCCCTCCGCCGCCGGCGGTAGCTACACGGTGAGCAGCAACTCCGATGTCACCCAGATGGCAGCCATTGCTAGGCGCTCCCCCTTCGCCGACTGCCCATCCTCCTCATACGCCTCCAGCATGGACAACATCTCCAAGCTGCTCGACGGCTTCATGAAGACCAACTCCCCGTCGCCGCCGCCGCCACCGCTGCAGCACTATGACAGCGGCTATTACGACGACGTCAAGCCCGCCGTCGATGTCGGCGGCAACCCCTTGCTGTCGTCCTTCGACTGCATGTCCGGCGCCGACCTGGACTGCTGCTTCGACGTTCATCAGCAGCACCAGCAGCAGCAGCCGGCGTCGTTCATGGAGTACGGCGGCTATGGCGGCGGCTACGGCGACGAGAGCAAGCAGCAGCTGATGAACCAGGCAGCGCCGCCGCTGTCATCGATCGAGAAGTGGCTGTTCGACGAGGCGGCGGCGGAGCAGGTCGCCGACCTCATGGACCTCTCCGACGGTTGCTGCTCCGTCCCAATGATGTTTTAA
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| Protein seq | MGRPPCCDKEGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIKRGNFTAHEEGIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLAAAANSTSSSNRHPIFADATFPSAAGGSYTVSSNSDVTQMAAIARRSPFADCPSSSYASSMDNISKLLDGFMKTNSPSPPPPPLQHYDSGYYDDVKPAVDVGGNPLLSSFDCMSGADLDCCFDVHQQHQQQQPASFMEYGGYGGGYGDESKQQLMNQAAPPLSSIEKWLFDEAAAEQVADLMDLSDGCCSVPMMF |
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| Function | Transcription factor MYB60 [UniProtKB/Swiss-Prot:B3VTV7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0125000 | OsNip_12t0125000-01 | Chr12 | 1200746 | 1201965 | - | RAP2018-11-26 | ||
| CDS seq | ATGGGCCGGCCGCCGTGCTGCGACAAGGAGGGGATCAAGAAGGGGCCATGGACGCCCGAGGAGGACATCATCCTCGTCTCCTACATCCAAGAACACGGCCCCGGCAACTGGAGATCGGTTCCCATCAACACTGGGCTGATGAGGTGCAGCAAGAGCTGCAGGCTGCGGTGGACGAACTACCTGCGGCCGGGGATAAAGCGCGGCAACTTCACGGCGCACGAGGAGGGGATCATCGTCCACCTCCAGTCGCTTCTCGGCAACCGCTGGGCCGCCATCGCCTCCTACCTCCCCCAGCGCACCGACAACGACATCAAGAACTACTGGAACACCCACCTCAAGAAGAAGCTCGCCGCCGCCGCCAACTCCACTTCATCCTCCAACCGCCACCCCATCTTCGCCGACGCCACCTTCCCCTCCGCCGCCGGCGGTAGCTACACGGTGAGCAGCAACTCCGATGTCACCCAGATGGCAGCCATTGCTAGGCGCTCCCCCTTCGCCGACTGCCCATCCTCCTCATACGCCTCCAGCATGGACAACATCTCCAAGCTGCTCGACGGCTTCATGAAGACCAACTCCCCGTCGCCGCCGCCGCCACCGCTGCAGCACTATGACAGCGGCTATTACGACGACGTCAAGCCCGCCGTCGATGTCGGCGGCAACCCCTTGCTGTCGTCCTTCGACTGCATGTCCGGCGCCGACCTGGACTGCTGCTTCGACGTTCATCAGCAGCACCAGCAGCAGCAGCCGGCGTCGTTCATGGAGTACGGCGGCTATGGCGGCGGCTACGGCGACGAGAGCAAGCAGCAGCTGATGAACCAGGCAGCGCCGCCGCTGTCATCGATCGAGAAGTGGCTGTTCGACGAGGCGGCGGCGGAGCAGGTCGCCGACCTCATGGACCTCTCCGACGGTTGCTGCTCCGTCCCAATGATGTTTTAA
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| Protein seq | MGRPPCCDKEGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIKRGNFTAHEEGIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLAAAANSTSSSNRHPIFADATFPSAAGGSYTVSSNSDVTQMAAIARRSPFADCPSSSYASSMDNISKLLDGFMKTNSPSPPPPPLQHYDSGYYDDVKPAVDVGGNPLLSSFDCMSGADLDCCFDVHQQHQQQQPASFMEYGGYGGGYGDESKQQLMNQAAPPLSSIEKWLFDEAAAEQVADLMDLSDGCCSVPMMF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0128500 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g03150 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0125000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0001610 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0001830 | RBH | 0.0 | 1.157404 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0001840 | RBH | 0.0 | 0.0 | 0.477704 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0001640 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0001770 | RBH | 0.0 | 1.459116 | 0.461487 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0021700 | RBH | 2.565839 | 1.167163 | 0.7170785 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0001760 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0022800 | RBH | 2.516024 | 1.133834 | 0.257158 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0001650 | RBH | 0.0 | 0.051196 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0001810 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0001790 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0001760 | RBH | 0.224924 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0001830 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G001780 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0001750 | SBH | 0.0 | 0.0 | 0.0 |
