Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_12g0109633 | OGI:12001360 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr12:521291-522682 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCAACGGCGACGATGCAGCCTTCTCTCTCCAAAGGCGCCATCGCCGCCTCCTCCTCCTCCTCCTCGCCACCTTTGGCGTACAGCACGTCCTCCTCCACGTCGTACAGGTTGGTCGTCCTCACCTCCTGCGCCAGCGCGCACGGCGCGCAGCACAGCCACTTGCCGTAGTCCGCCGCCGTTGCCCGCCCGCCGCACATGGACCAGTGGTGCGCCGGCAGCCCGAAGCGCCTCCGCATCTGCGCGCGCCAGAACCCGCCGTACGTGAGGCCCAGCACGGACAGCAAGGCGCCCGCGGCGCCCACGACGAACCGCAGCGTGTCGTCGTGGACGTTGAGCGCGGCCACCGCGAACACCAGCACCGGCGCCGCGCACAGCAGCGCGAACGTGAAGACGTGCACGTACATGTTGCCGAGCCCCAGGCGCTCCATGTTCCACCCGAACACGCAGAACGTGCACGACAGCGACAGCGCGCGCCACCGTCGGGTCGTCGCCGACGTCGAACAGCCCGCCGGCCCACTCCGGCTTCGCGACCACCGCCCTGTTTCTGTTGCTGTCACACTGCGCCGTCACCGCGATCGCGTTGGCCTCGTCGACCTGCGATTTCACGTTCTCGTCGTCGGTGGACGCCGGGATCAGCACGATCTTCCGGCCGAGCGGGCCGTACACCATGTACAAGGCGGCGACGATGGGGAAGCCGAGGCCGAGCGCCATGCACAGGTTGACGGCCAAGTCCGGGCGGTTGTCTCTGCCGAAGAACCAGAAGAGCGCGCAGTAGCCGTACTGCGCGAAGCACGTGGCGTGGAGCAGGAGCACGACGACGGCCACGTGGAGGCGCTCGCGGCGCAGGCCGGCGGCGCCGTTCTTGCAGTAGAGGGCACGGAGCTCGGCGACGTCGGCGGCGCGCCATCGGAGGAGGAGCGCGAGGTGGTGGCAGAGCTTGGGATGCTGGTAGACGCACATGATGGTGAAGAGCGCGTTGAGCATCTGGTTGGCCACCTCGGTCCATCGGCGGCGGCGCGAGGCGTCGGGCACGGCGGAGTTGAGCGCGCCGGTCATGAGGAGGAAGACGAAGGCGACGCCGCCGGCGACGAAGGCGAGCCAGACGAGCAGAGCCGCGTTCATTGGGTGCTTGGCCCACGCGAGGCACTTGGCGCGGAGGGCGCGCCAGTCGACGGAGCGGACGAACGCCGGTAAGCGGCGGGAAGCTGCAGGGTTGTTTGTGGTGCGGAGGGAGGCGAGGCGGGTGAGGAAGGCGGCGCCGGAGAAGGAGAACCATGGTGTCTTGGACGGCGCCGCCCGGAGGAAGTCGAGGAGCCTCTCCTTCTCCTTGTGCTTCTTGTGCTGCTCCTGCTTGTGCTGTGCATCATCTTCATGCTGTTCTTGTGATTCCAT
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| CDS seq | ATGGAATCACAAGAACAGCATGAAGATGATGCACAGCACAAGCAGGAGCAGCACAAGAAGCACAAGGAGAAGGAGAGGCTCCTCGACTTCCTCCGGGCGGCGCCGTCCAAGACACCATGGTTCTCCTTCTCCGGCGCCGCCTTCCTCACCCGCCTCGCCTCCCTCCGCACCACAAACAACCCTGCAGCTTCCCGCCGCTTACCGGCGTTCGTCCGCTCCGTCGACTGGCGCGCCCTCCGCGCCAAGTGCCTCGCGTGGGCCAAGCACCCAATGAACGCGGCTCTGCTCGTCTGGCTCGCCTTCGTCGCCGGCGGCGTCGCCTTCGTCTTCCTCCTCATGACCGGCGCGCTCAACTCCGCCGTGCCCGACGCCTCGCGCCGCCGCCGATGGACCGAGGTGGCCAACCAGATGCTCAACGCGCTCTTCACCATCATGTGCGTCTACCAGCATCCCAAGCTCTGCCACCACCTCGCGCTCCTCCTCCGATGGCGCGCCGCCGACGTCGCCGAGCTCCGTGCCCTCTACTGCAAGAACGGCGCCGCCGGCCTGCGCCGCGAGCGCCTCCACGTGGCCGTCGTCGTGCTCCTGCTCCACGCCACGTGCTTCGCGCAGTACGGCTACTGCGCGCTCTTCTGGTTCTTCGGCAGAGACAACCGCCCGGACTTGGCCGTCAACCTGTGCATGGCGCTCGGCCTCGGCTTCCCCATCGTCGCCGCCTTGTACATGGTGTACGGCCCGCTCGGCCGGAAGATCGTGCTGATCCCGGCGTCCACCGACGACGAGAACGTGAAATCGCAGGTCGACGAGGCCAACGCGATCGCGGTGACGGCGCAGTGTGACAGCAACAGAAACAGGGCGGTGGTCGCGAAGCCGGAGTGGGCCGGCGGGCTGTTCGACGTCGGCGACGACCCGACGGTGGCGCGCGCTGTCGCTGTCGTGCACGTTCTGCGTGTTCGGGTGGAACATGGAGCGCCTGGGGCTCGGCAACATGTACGTGCACGTCTTCACGTTCGCGCTGCTGTGCGCGGCGCCGGTGCTGGTGTTCGCGGTGGCCGCGCTCAACGTCCACGACGACACGCTGCGGTTCGTCGTGGGCGCCGCGGGCGCCTTGCTGTCCGTGCTGGGCCTCACGTACGGCGGGTTCTGGCGCGCGCAGATGCGGAGGCGCTTCGGGCTGCCGGCGCACCACTGGTCCATGTGCGGCGGGCGGGCAACGGCGGCGGACTACGGCAAGTGGCTGTGCTGCGCGCCGTGCGCGCTGGCGCAGGAGGTGAGGACGACCAACCTGTACGACGTGGAGGAGGACGTGCTGTACGCCAAAGGTGGCGAGGAGGAGGAGGAGGAGGCGGCGATGGCGCCTTTGGAGAGAGAAGGCTGCATCGTCGCCGTTGA
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| Protein seq | MESQEQHEDDAQHKQEQHKKHKEKERLLDFLRAAPSKTPWFSFSGAAFLTRLASLRTTNNPAASRRLPAFVRSVDWRALRAKCLAWAKHPMNAALLVWLAFVAGGVAFVFLLMTGALNSAVPDASRRRRWTEVANQMLNALFTIMCVYQHPKLCHHLALLLRWRAADVAELRALYCKNGAAGLRRERLHVAVVVLLLHATCFAQYGYCALFWFFGRDNRPDLAVNLCMALGLGFPIVAALYMVYGPLGRKIVLIPASTDDENVKSQVDEANAIAVTAQCDSNRNRAVVAKPEWAGGLFDVGDDPTVARAVAVVHVLRVRVEHGAPGARQHVRARLHVRAAVRGAGAGVRGGRAQRPRRHAAVRRGRRGRLAVRAGPHVRRVLARADAEALRAAGAPLVHVRRAGNGGGLRQVAVLRAVRAGAGGEDDQPVRRGGGRAVRQRWRGGGGGGGDGAFGERRLHRRR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0109633 | OsNip_12t0109633-00 | Chr12 | 521291 | 522682 | - | RAP2018-11-26 | ||
| CDS seq | ATGGAATCACAAGAACAGCATGAAGATGATGCACAGCACAAGCAGGAGCAGCACAAGAAGCACAAGGAGAAGGAGAGGCTCCTCGACTTCCTCCGGGCGGCGCCGTCCAAGACACCATGGTTCTCCTTCTCCGGCGCCGCCTTCCTCACCCGCCTCGCCTCCCTCCGCACCACAAACAACCCTGCAGCTTCCCGCCGCTTACCGGCGTTCGTCCGCTCCGTCGACTGGCGCGCCCTCCGCGCCAAGTGCCTCGCGTGGGCCAAGCACCCAATGAACGCGGCTCTGCTCGTCTGGCTCGCCTTCGTCGCCGGCGGCGTCGCCTTCGTCTTCCTCCTCATGACCGGCGCGCTCAACTCCGCCGTGCCCGACGCCTCGCGCCGCCGCCGATGGACCGAGGTGGCCAACCAGATGCTCAACGCGCTCTTCACCATCATGTGCGTCTACCAGCATCCCAAGCTCTGCCACCACCTCGCGCTCCTCCTCCGATGGCGCGCCGCCGACGTCGCCGAGCTCCGTGCCCTCTACTGCAAGAACGGCGCCGCCGGCCTGCGCCGCGAGCGCCTCCACGTGGCCGTCGTCGTGCTCCTGCTCCACGCCACGTGCTTCGCGCAGTACGGCTACTGCGCGCTCTTCTGGTTCTTCGGCAGAGACAACCGCCCGGACTTGGCCGTCAACCTGTGCATGGCGCTCGGCCTCGGCTTCCCCATCGTCGCCGCCTTGTACATGGTGTACGGCCCGCTCGGCCGGAAGATCGTGCTGATCCCGGCGTCCACCGACGACGAGAACGTGAAATCGCAGGTCGACGAGGCCAACGCGATCGCGGTGACGGCGCAGTGTGACAGCAACAGAAACAGGGCGGTGGTCGCGAAGCCGGAGTGGGCCGGCGGGCTGTTCGACGTCGGCGACGACCCGACGGTGGCGCGCGCTGTCGCTGTCGTGCACGTTCTGCGTGTTCGGGTGGAACATGGAGCGCCTGGGGCTCGGCAACATGTACGTGCACGTCTTCACGTTCGCGCTGCTGTGCGCGGCGCCGGTGCTGGTGTTCGCGGTGGCCGCGCTCAACGTCCACGACGACACGCTGCGGTTCGTCGTGGGCGCCGCGGGCGCCTTGCTGTCCGTGCTGGGCCTCACGTACGGCGGGTTCTGGCGCGCGCAGATGCGGAGGCGCTTCGGGCTGCCGGCGCACCACTGGTCCATGTGCGGCGGGCGGGCAACGGCGGCGGACTACGGCAAGTGGCTGTGCTGCGCGCCGTGCGCGCTGGCGCAGGAGGTGAGGACGACCAACCTGTACGACGTGGAGGAGGACGTGCTGTACGCCAAAGGTGGCGAGGAGGAGGAGGAGGAGGCGGCGATGGCGCCTTTGGAGAGAGAAGGCTGCATCGTCGCCGTTGA
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| Protein seq | MESQEQHEDDAQHKQEQHKKHKEKERLLDFLRAAPSKTPWFSFSGAAFLTRLASLRTTNNPAASRRLPAFVRSVDWRALRAKCLAWAKHPMNAALLVWLAFVAGGVAFVFLLMTGALNSAVPDASRRRRWTEVANQMLNALFTIMCVYQHPKLCHHLALLLRWRAADVAELRALYCKNGAAGLRRERLHVAVVVLLLHATCFAQYGYCALFWFFGRDNRPDLAVNLCMALGLGFPIVAALYMVYGPLGRKIVLIPASTDDENVKSQVDEANAIAVTAQCDSNRNRAVVAKPEWAGGLFDVGDDPTVARAVAVVHVLRVRVEHGAPGARQHVRARLHVRAAVRGAGAGVRGGRAQRPRRHAAVRRGRRGRLAVRAGPHVRRVLARADAEALRAAGAPLVHVRRAGNGGGLRQVAVLRAVRAGAGGEDDQPVRRGGGRAVRQRWRGGGGGGGDGAFGERRLHRRR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.089934 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0109633 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g01890 | RBH | 0.0 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0109633 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0000580 | RBH | 0.0 | 0.0 | 1.446550 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0000770 | RBH | 0.0 | 0.0 | 0.079896 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0000740 | RBH | 0.0 | 0.0 | 1.142693 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0000600 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0000690 | SBH | 0.000000 | 0.000000 | 1.284173 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0008500 | SBH | 0 | 0.051911 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0000680 | SBH | 0.019240 | 0.061294 | 0.022284 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0008600 | SBH | 0 | 0.024089 | 0.012187 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0000600 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0000690 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0000690 | SBH | 0.0 | 1.255573 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0000710 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0000710 | SBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G000690 | SBH | 0.0 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0000660 | SBH | 0.151824 | 0.0 | 0.0 |
