Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0700500 | OGI:11083310 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:28703901-28705315 | ||||||||
| Gene Symbol | MYBAS1, OsMYBAS1 | ||||||||||
| DNA seq | ATTTTTAACCTTATAATCTGTTACTTGATCAATAAACTATACCATTCATACAAAGTGGTATTGTGTTCCATACTGTCAAAGGTAAGTCACACAAGCTATGTTGCACATTAGATTCTACATACATACATACATAATACATACATCATGAGCACACCAATAATGTTATAGTAGATCTGTAAATATTGAGACCCATAGTAACACAAATATAACCACATAAGTACTGCAAATCTGGAAAGCACATATGTAGCTTAGAAACCTGGCCTATATCTTGATGTATGGCTTTATCCTTCAATAGCATGGCCCTCATTTTCCATAACCAGATTGTGTAGCCAACATCCTTGTTTCTTCATTGTCAATCTTCCAGAATACCTCAGGGCAGCTGTAGTCTGACATGGTAGATGTCAGAAGTGGACATGGGAGATTGCTGCATGCTTTGTCTTTCCCTTCATCTATACCCAGCAAGGAAGGTGCCCCTGGCGCCTCAATTTCTTTCCATATCTGATCCATGGTATATCCATCCATGACACTCTGAGTGCTTTTGAGGACTCTTGCCATGCAGCTGCGATCATCATGAATGTCTCCTCCATCCATACTGATGATTGGCACAGTATCTAGGAGGCAGGATTGGTATACCAGTGACGACGAGGAGGACGAGGGTGACATGTCACCCCTTCTCTCCTGGGCTTTCTTCCTCATGTGTGTCCTCCAGTAGTTCTTGATCTCATTGTCTGTGCGCCCTGGCAGCCTCCGTGCTATCCTAGACCACCTGTGTATACAGTGAATATCTGTTACATTGAACTGCAAAAGCTTAGAGAAGTTTCTTGTACAGAGTATCTTTTTTATCATACCTGTTACCCCAACGAGCATGGAGCTCAATAATAAGATGTTCCTCTTTTGGTGACATGCGCCCATGCTTGAGGCCAGGGTGGAGGTAGTTCACCCAACGGAGGCGGCAGCTCTTGCCTGTCCTATTGAGCCCTTCATGGACATAGTGAGGATGAAGTATGAAGATATTGGATTAGAGACCAAGACATTTCTGCTTGCGACTTTGCGCCAAGGATTGCAAAATAGCTACCTAATTTGCAGGTCCCCACCCCTCAAACCTGATACTTTGGCAACGAAATCCCAACGGCGGTCACCGAACAGGCGGACAGTGCATACCAGTTGCAGGTCCTCCTGCTCTGTCCATGGTCCCTTGCGCATCTCCTCTCTCACTGTCACCATATTGGGGCTTGGGATGTTGCAATGCTAACGTTGTTCACTTCTACCTTGGATAGGATGGGAGCCACTCTCCGTGTTCTTCTTCCTCTTTGAGTTTGTTGGCTCCAGCTTCACGTTTAGAGCCTTGATCAACTCCAGACCAACTGGAAGGTTGCTATTAGGGAGAGAGGAAGCCACTTTGTCTTGGCTGTGGT
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| CDS seq | ATGGTGACAGTGAGAGAGGAGATGCGCAAGGGACCATGGACAGAGCAGGAGGACCTGCAACTGGTATGCACTGTCCGCCTGTTCGGTGACCGCCGTTGGGATTTCGTTGCCAAAGTATCAGGGCTCAATAGGACAGGCAAGAGCTGCCGCCTCCGTTGGGTGAACTACCTCCACCCTGGCCTCAAGCATGGGCGCATGTCACCAAAAGAGGAACATCTTATTATTGAGCTCCATGCTCGTTGGGGTAACAGGTGGTCTAGGATAGCACGGAGGCTGCCAGGGCGCACAGACAATGAGATCAAGAACTACTGGAGGACACACATGAGGAAGAAAGCCCAGGAGAGAAGGGGTGACATGTCACCCTCGTCCTCCTCGTCGTCACTGGTATACCAATCCTGCCTCCTAGATACTGTGCCAATCATCAGTATGGATGGAGGAGACATTCATGATGATCGCAGCTGCATGGCAAGAGTCCTCAAAAGCACTCAGAGTGTCATGGATGGATATACCATGGATCAGATATGGAAAGAAATTGAGGCGCCAGGGGCACCTTCCTTGCTGGGTATAGATGAAGGGAAAGACAAAGCATGCAGCAATCTCCCATGTCCACTTCTGACATCTACCATGTCAGACTACAGCTGCCCTGAGGTATTCTGGAAGATTGACAATGAAGAAACAAGGATGTTGGCTACACAATCTGGTTATGGAAAATGA
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| Protein seq | MVTVREEMRKGPWTEQEDLQLVCTVRLFGDRRWDFVAKVSGLNRTGKSCRLRWVNYLHPGLKHGRMSPKEEHLIIELHARWGNRWSRIARRLPGRTDNEIKNYWRTHMRKKAQERRGDMSPSSSSSSLVYQSCLLDTVPIISMDGGDIHDDRSCMARVLKSTQSVMDGYTMDQIWKEIEAPGAPSLLGIDEGKDKACSNLPCPLLTSTMSDYSCPEVFWKIDNEETRMLATQSGYGK |
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| Function | Myb-related protein MYBAS1 [UniProtKB/Swiss-Prot:Q53NK6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0700500 | OsNip_11t0700500-01 | Chr11 | 28703901 | 28705306 | - | RAP2018-11-26 | ||
| CDS seq | ATGGTGACAGTGAGAGAGGAGATGCGCAAGGGACCATGGACAGAGCAGGAGGACCTGCAACTGGTATGCACTGTCCGCCTGTTCGGTGACCGCCGTTGGGATTTCGTTGCCAAAGTATCAGGGCTCAATAGGACAGGCAAGAGCTGCCGCCTCCGTTGGGTGAACTACCTCCACCCTGGCCTCAAGCATGGGCGCATGTCACCAAAAGAGGAACATCTTATTATTGAGCTCCATGCTCGTTGGGGTAACAGGTGGTCTAGGATAGCACGGAGGCTGCCAGGGCGCACAGACAATGAGATCAAGAACTACTGGAGGACACACATGAGGAAGAAAGCCCAGGAGAGAAGGGGTGACATGTCACCCTCGTCCTCCTCGTCGTCACTGGTATACCAATCCTGCCTCCTAGATACTGTGCCAATCATCAGTATGGATGGAGGAGACATTCATGATGATCGCAGCTGCATGGCAAGAGTCCTCAAAAGCACTCAGAGTGTCATGGATGGATATACCATGGATCAGATATGGAAAGAAATTGAGGCGCCAGGGGCACCTTCCTTGCTGGGTATAGATGAAGGGAAAGACAAAGCATGCAGCAATCTCCCATGTCCACTTCTGACATCTACCATGTCAGACTACAGCTGCCCTGAGGTATTCTGGAAGATTGACAATGAAGAAACAAGGATGTTGGCTACACAATCTGGTTATGGAAAATGA
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| Protein seq | MVTVREEMRKGPWTEQEDLQLVCTVRLFGDRRWDFVAKVSGLNRTGKSCRLRWVNYLHPGLKHGRMSPKEEHLIIELHARWGNRWSRIARRLPGRTDNEIKNYWRTHMRKKAQERRGDMSPSSSSSSLVYQSCLLDTVPIISMDGGDIHDDRSCMARVLKSTQSVMDGYTMDQIWKEIEAPGAPSLLGIDEGKDKACSNLPCPLLTSTMSDYSCPEVFWKIDNEETRMLATQSGYGK
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0700500 | OsNip_11t0700500-02 | Chr11 | 28703973 | 28705315 | - | IsoSeq | ||
| CDS seq | CACAGCCAAGACAAAGTGGCTTCCTCTCTCCCTAATAGCAACCTTCCAGTTGGTCTGGAGTTGATCAAGGCTCTAAACGTGAAGCTGGAGCCAACAAACTCAAAGAGGAAGAAGAACACGGAGAGTGGCTCCCATCCTATCCAAGGTAGAAGTGAACAA |
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| Protein seq | HSQDKVASSLPNSNLPVGLELIKALNVKLEPTNSKRKKNTESGSHPIQGRSEQ |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr11 | 28704878 | 28705004 | - | OsNip_11t0700500-02 | OsNip_11t0700500-02,OsNip_11t0700500-01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.953559 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g47460 | RBH | 0.0 | 0.0 | 0.246346 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0700500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0024730 | RBH | 0.281902 | 20.267368 | 1.921913 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0024720 | RBH | 0.090405 | 10.582605 | 0.893615 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0024240 | RBH | 0.589427 | 15.565393 | 1.389989 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0024250 | RBH | 0.000000 | 0.434542 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0024550 | RBH | 1.583391 | 48.063736 | 7.171098 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0448000 | RBH | 1.5310045 | 56.351309 | 0.090796 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0025080 | RBH | 0.372918 | 0.860142 | 0.161085 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0444200 | RBH | 3.5914665 | 54.2665215 | 0.863053 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0024870 | RBH | 0.0 | 1.626706 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0024980 | RBH | 0.258724 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0024360 | RBH | 1.742406 | 100.793808 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0024070 | RBH | 0.128336 | 0.0 | 0.322710 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0024460 | RBH | 0.082812 | 14.286705 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G024450 | RBH | 0.515038 | 1.886517 | 1.694717 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0024660 | RBH | 2.972747 | 130.608505 | 0.607347 |
