Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0680200 | OGI:11079790 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:27495679-27498080 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTATAGTAATCTATACCCTTGTCTACTAGACCAGCATGACTACAAGCTGAGAGTAGAGCAACAAACGTTACATAGTCTGGCTTTCTACCCGTTGCAACCATTTGCTTAAATGTTTCCTCAGCTTCCTTGAAATACCCATATTTTGCATAACCAGATATCAGCGTATTCCAGCATTGTTGAGGTCGAATGGCTTGGTCAGGAACCACTTGCAACATTTCATCCATCTTTCCACATTTCCCATACATATCCATTGCAGCATTAACAACGTATGAGTCTGAATCCAGCCCAGATTTCATACCAAGACCATGTAGCTGCATGCCTTCTTCTAATGATGCGAGGCTTGCACAGGATGACAGACATTCAGCTAGGCAAACACGATCAAGTTTGTTTCCAGCATGCTGCATATCAATGAAGAGCTTTAGAGCTTCCTCTCCATGGCCAAGTTGGACATTCGCTGCTATTATGGCATTCCATGAAACAATGTTTTTGTTGGTGATACTATTGAATATATTAGTGCTTGACTCTAAATTGCCACATTTTGCATACATTGTGATTAGAGAGTTAGCAACATACTCATCTGACAAAAATCCAGTGCGTATTATGTATGCATGTAAGGGCCTTCCATAATTATGCAGATCATTTGAAGATGCGAAAGAACCATGGATATTTATCATTGTAATGTAATTTGGCTTTATCCCTGCACTTCTCATCCAAGAAAATACTTGCATTGCCTTTGTACCATCCTCAAGTACTGCGTAGCCACCAATAAGTACATTGTAGCTGACAATATCATGAGTCGGCATGGACTGAAAAACTTTCTCAGCATCTTCCATAGAATTGCATTTCCCATACATCGTGATGAGAGAATTACCAACCAGTAGATTTCTCTGAAGACTCAACTGCAATACGATGGCATGAACCATTTTGCCATCTATCAAGGCTCCTGGACTTGAACATGCTCCTAGAGCACTGGAAAATGTCAGGTGATTTGGGCTTTCATTTGTATGAAATAACTGACCTAGTGTCTTCAACGCGTCGGTGCTATTACAGTTCTGCACATAGGATGAAATCATAGTGTTCCATGATATTAGGTCCCTTCTACTCATGTTCCAGAACAGAAACTCAGCATCACTCAATTTTCCAGCAGCAGAGTACATATTAACCAGAGCATTAATTACTGTTACTGATGAATCCAGACTGCTCCTGAGACACAGGGAATGAATTCCACTTCCATGGCTGAAATGATCTGAGGAGGCACAGACAGACATCAAGCTGCACAGGGTTGTTGCATCAGGCCTTAATCCATGATGACGCATATCTGAAAACACCAGAAAACATTTGCTGCAGATTCCTTGATGTGAGTACATCGATATCATCGCGTTCCATGAAATAGTATCATGTTCCTCCATTCGATCAAAGAGCTTCTCAGCATCATGCACCCTTCCCAAGTTGCCAAACATGGTAATCAACGAATTCGCCACAGAGACCTGGTTTTGGAGTCCAGAGACAATGACCTGGGAAGCAACCTGAAGCCCAGGCACCTCATTCTCGAGCGATCCACACAAGCTGACCACTGTCGCGAACGCATTTGCATTGCATGGGACCCCATCCCTCCTCATCTGACGGTAAGCTCTCAATGCCTCTTCCAGGTAACCATTGGATGACAATGCCACCATCAGTGCTGTCCACGACACGACATTCCTCTCGGGCATCTCCCAGAACAACCTCTGCGCATCGGACACGATCCCACGGGAGCCATACAAGTGCAGGAGCGCCGTGCCGATGTAGACGTTGCCCATGAGCCCGGCCCTGTGGGTGAGCGCGTGGATGGCGGCGCCGCACGCGATGCCCTCGTCCCGGCCCCGGCGCTCGCACGCGGTGACGAGGCTGGCGAGCGCGAACCCGCTGAGCGGGACGCCACGCTCCCGCATACCGCGGAGCATCTCGAAGGCCGTCCCGTCGCGTCCGCAGCGGACGCAGCCGGAGACGGCGGTGTACCAGGTGGATGGGGTCCGGTCGGCCATTTCGTCGAACAGGTGGAGCGCGGCGGCGGCGGCGGAGGCATCCCGTTGGCGGAAGTAGAAGGCGAGGAGGGTGTTGCGGTGGAAGGCGCTGAGCGGGAGTGCGAGGCGGACGGCGAGGCCGTGGATGGCGCGGGCGAGGAGGGGGTGGTCGCCGAGGCGGGAGAAGCCGGCGCGCGGGAACTCCGCGACGGCCGGGTGCGGGTGGTCGGCGAGGAGGGCGAGAGTAGATGGAGGGCATTGTTGCGTGGAGGCGGTAGTGGTTACGCGGCAGGAGGAGGAAGTGGTGGCGAGGAGGAGGCGTGGCGGCGGCCGGTGGATGCGACGGCGGTGGATGGCCGGCGGCCGGGTGCGCCGAGGAAGGAGAGAGAGAAACAGCAT
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| CDS seq | ATGCTGTTTCTCTCTCTCCTTCCTCGGCGCACCCGGCCGCCGGCCATCCACCGCCGTCGCATCCACCGGCCGCCGCCACGCCTCCTCCTCGCCACCACTTCCTCCTCCTGCCGCGTAACCACTACCGCCTCCACGCAACAATGCCCTCCATCTACTCTCGCCCTCCTCGCCGACCACCCGCACCCGGCCGTCGCGGAGTTCCCGCGCGCCGGCTTCTCCCGCCTCGGCGACCACCCCCTCCTCGCCCGCGCCATCCACGGCCTCGCCGTCCGCCTCGCACTCCCGCTCAGCGCCTTCCACCGCAACACCCTCCTCGCCTTCTACTTCCGCCAACGGGATGCCTCCGCCGCCGCCGCCGCGCTCCACCTGTTCGACGAAATGGCCGACCGGACCCCATCCACCTGGTACACCGCCGTCTCCGGCTGCGTCCGCTGCGGACGCGACGGGACGGCCTTCGAGATGCTCCGCGGTATGCGGGAGCGTGGCGTCCCGCTCAGCGGGTTCGCGCTCGCCAGCCTCGTCACCGCGTGCGAGCGCCGGGGCCGGGACGAGGGCATCGCGTGCGGCGCCGCCATCCACGCGCTCACCCACAGGGCCGGGCTCATGGGCAACGTCTACATCGGCACGGCGCTCCTGCACTTGTATGGCTCCCGTGGGATCGTGTCCGATGCGCAGAGGTTGTTCTGGGAGATGCCCGAGAGGAATGTCGTGTCGTGGACAGCACTGATGGTGGCATTGTCATCCAATGGTTACCTGGAAGAGGCATTGAGAGCTTACCGTCAGATGAGGAGGGATGGGGTCCCATGCAATGCAAATGCGTTCGCGACAGTGGTCAGCTTGTGTGGATCGCTCGAGAATGAGGTGCCTGGGCTTCAGGTTGCTTCCCAGGTCATTGTCTCTGGACTCCAAAACCAGGTCTCTGTGGCGAATTCGTTGATTACCATGTTTGGCAACTTGGGAAGGGTGCATGATGCTGAGAAGCTCTTTGATCGAATGGAGGAACATGATACTATTTCATGGAACGCGATGATATCGATGTACTCACATCAAGGAATCTGCAGCAAATGTTTTCTGGTGTTTTCAGATATGCGTCATCATGGATTAAGGCCTGATGCAACAACCCTGTGCAGCTTGATGTCTGTCTGTGCCTCCTCAGATCATTTCAGCCATGGAAGTGGAATTCATTCCCTGTGTCTCAGGAGCAGTCTGGATTCATCAGTAACAGTAATTAATGCTCTGGTTAATATGTACTCTGCTGCTGGAAAATTGAGTGATGCTGAGTTTCTGTTCTGGAACATGAGTAGAAGGGACCTAATATCATGGAACACTATGATTTCATCCTATGTGCAGAACTGTAATAGCACCGACGCGTTGAAGACACTAGGTCAGTTATTTCATACAAATGAAAGCCCAAATCACCTGACATTTTCCAGTGCTCTAGGAGCATGTTCAAGTCCAGGAGCCTTGATAGATGGCAAAATGGTTCATGCCATCGTATTGCAGTTGAGTCTTCAGAGAAATCTACTGGTTGGTAATTCTCTCATCACGATGTATGGGAAATGCAATTCTATGGAAGATGCTGAGAAAGTTTTTCAGTCCATGCCGACTCATGATATTGTCAGCTACAATGTACTTATTGGTGGCTACGCAGTACTTGAGGATGGTACAAAGGCAATGCAAGTATTTTCTTGGATGAGAAGTGCAGGGATAAAGCCAAATTACATTACAATGATAAATATCCATGGTTCTTTCGCATCTTCAAATGATCTGCATAATTATGGAAGGCCCTTACATGCATACATAATACGCACTGGATTTTTGTCAGATGAGTATGTTGCTAACTCTCTAATCACAATGTATGCAAAATGTGGCAATTTAGAGTCAAGCACTAATATATTCAATAGTATCACCAACAAAAACATTGTTTCATGGAATGCCATAATAGCAGCGAATGTCCAACTTGGCCATGGAGAGGAAGCTCTAAAGCTCTTCATTGATATGCAGCATGCTGGAAACAAACTTGATCGTGTTTGCCTAGCTGAATGTCTGTCATCCTGTGCAAGCCTCGCATCATTAGAAGAAGGCATGCAGCTACATGGTCTTGGTATGAAATCTGGGCTGGATTCAGACTCATACGTTGTTAATGCTGCAATGGATATGTATGGGAAATGTGGAAAGATGGATGAAATGTTGCAAGTGGTTCCTGACCAAGCCATTCGACCTCAACAATGCTGGAATACGCTGATATCTGGTTATGCAAAATATGGGTATTTCAAGGAAGCTGAGGAAACATTTAAGCAAATGGTTGCAACGGGTAGAAAGCCAGACTATGTAACACAAGGGTATAGATTACTATAA
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| Protein seq | MLFLSLLPRRTRPPAIHRRRIHRPPPRLLLATTSSSCRVTTTASTQQCPPSTLALLADHPHPAVAEFPRAGFSRLGDHPLLARAIHGLAVRLALPLSAFHRNTLLAFYFRQRDASAAAAALHLFDEMADRTPSTWYTAVSGCVRCGRDGTAFEMLRGMRERGVPLSGFALASLVTACERRGRDEGIACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTALMVALSSNGYLEEALRAYRQMRRDGVPCNANAFATVVSLCGSLENEVPGLQVASQVIVSGLQNQVSVANSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDIVSYNVLIGGYAVLEDGTKAMQVFSWMRSAGIKPNYITMINIHGSFASSNDLHNYGRPLHAYIIRTGFLSDEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANVQLGHGEEALKLFIDMQHAGNKLDRVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMDEMLQVVPDQAIRPQQCWNTLISGYAKYGYFKEAEETFKQMVATGRKPDYVTQGYRLL |
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| Function | Pentatricopeptide repeat-containing protein At3g09040, mitochondrial [UniProtKB/Swiss-Prot:Q9SS83] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0680200 | OsNip_11t0680200-00 | Chr11 | 27495679 | 27498080 | - | RAP2018-11-26 | ||
| CDS seq | ATGCTGTTTCTCTCTCTCCTTCCTCGGCGCACCCGGCCGCCGGCCATCCACCGCCGTCGCATCCACCGGCCGCCGCCACGCCTCCTCCTCGCCACCACTTCCTCCTCCTGCCGCGTAACCACTACCGCCTCCACGCAACAATGCCCTCCATCTACTCTCGCCCTCCTCGCCGACCACCCGCACCCGGCCGTCGCGGAGTTCCCGCGCGCCGGCTTCTCCCGCCTCGGCGACCACCCCCTCCTCGCCCGCGCCATCCACGGCCTCGCCGTCCGCCTCGCACTCCCGCTCAGCGCCTTCCACCGCAACACCCTCCTCGCCTTCTACTTCCGCCAACGGGATGCCTCCGCCGCCGCCGCCGCGCTCCACCTGTTCGACGAAATGGCCGACCGGACCCCATCCACCTGGTACACCGCCGTCTCCGGCTGCGTCCGCTGCGGACGCGACGGGACGGCCTTCGAGATGCTCCGCGGTATGCGGGAGCGTGGCGTCCCGCTCAGCGGGTTCGCGCTCGCCAGCCTCGTCACCGCGTGCGAGCGCCGGGGCCGGGACGAGGGCATCGCGTGCGGCGCCGCCATCCACGCGCTCACCCACAGGGCCGGGCTCATGGGCAACGTCTACATCGGCACGGCGCTCCTGCACTTGTATGGCTCCCGTGGGATCGTGTCCGATGCGCAGAGGTTGTTCTGGGAGATGCCCGAGAGGAATGTCGTGTCGTGGACAGCACTGATGGTGGCATTGTCATCCAATGGTTACCTGGAAGAGGCATTGAGAGCTTACCGTCAGATGAGGAGGGATGGGGTCCCATGCAATGCAAATGCGTTCGCGACAGTGGTCAGCTTGTGTGGATCGCTCGAGAATGAGGTGCCTGGGCTTCAGGTTGCTTCCCAGGTCATTGTCTCTGGACTCCAAAACCAGGTCTCTGTGGCGAATTCGTTGATTACCATGTTTGGCAACTTGGGAAGGGTGCATGATGCTGAGAAGCTCTTTGATCGAATGGAGGAACATGATACTATTTCATGGAACGCGATGATATCGATGTACTCACATCAAGGAATCTGCAGCAAATGTTTTCTGGTGTTTTCAGATATGCGTCATCATGGATTAAGGCCTGATGCAACAACCCTGTGCAGCTTGATGTCTGTCTGTGCCTCCTCAGATCATTTCAGCCATGGAAGTGGAATTCATTCCCTGTGTCTCAGGAGCAGTCTGGATTCATCAGTAACAGTAATTAATGCTCTGGTTAATATGTACTCTGCTGCTGGAAAATTGAGTGATGCTGAGTTTCTGTTCTGGAACATGAGTAGAAGGGACCTAATATCATGGAACACTATGATTTCATCCTATGTGCAGAACTGTAATAGCACCGACGCGTTGAAGACACTAGGTCAGTTATTTCATACAAATGAAAGCCCAAATCACCTGACATTTTCCAGTGCTCTAGGAGCATGTTCAAGTCCAGGAGCCTTGATAGATGGCAAAATGGTTCATGCCATCGTATTGCAGTTGAGTCTTCAGAGAAATCTACTGGTTGGTAATTCTCTCATCACGATGTATGGGAAATGCAATTCTATGGAAGATGCTGAGAAAGTTTTTCAGTCCATGCCGACTCATGATATTGTCAGCTACAATGTACTTATTGGTGGCTACGCAGTACTTGAGGATGGTACAAAGGCAATGCAAGTATTTTCTTGGATGAGAAGTGCAGGGATAAAGCCAAATTACATTACAATGATAAATATCCATGGTTCTTTCGCATCTTCAAATGATCTGCATAATTATGGAAGGCCCTTACATGCATACATAATACGCACTGGATTTTTGTCAGATGAGTATGTTGCTAACTCTCTAATCACAATGTATGCAAAATGTGGCAATTTAGAGTCAAGCACTAATATATTCAATAGTATCACCAACAAAAACATTGTTTCATGGAATGCCATAATAGCAGCGAATGTCCAACTTGGCCATGGAGAGGAAGCTCTAAAGCTCTTCATTGATATGCAGCATGCTGGAAACAAACTTGATCGTGTTTGCCTAGCTGAATGTCTGTCATCCTGTGCAAGCCTCGCATCATTAGAAGAAGGCATGCAGCTACATGGTCTTGGTATGAAATCTGGGCTGGATTCAGACTCATACGTTGTTAATGCTGCAATGGATATGTATGGGAAATGTGGAAAGATGGATGAAATGTTGCAAGTGGTTCCTGACCAAGCCATTCGACCTCAACAATGCTGGAATACGCTGATATCTGGTTATGCAAAATATGGGTATTTCAAGGAAGCTGAGGAAACATTTAAGCAAATGGTTGCAACGGGTAGAAAGCCAGACTATGTAACACAAGGGTATAGATTACTATAA
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| Protein seq | MLFLSLLPRRTRPPAIHRRRIHRPPPRLLLATTSSSCRVTTTASTQQCPPSTLALLADHPHPAVAEFPRAGFSRLGDHPLLARAIHGLAVRLALPLSAFHRNTLLAFYFRQRDASAAAAALHLFDEMADRTPSTWYTAVSGCVRCGRDGTAFEMLRGMRERGVPLSGFALASLVTACERRGRDEGIACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTALMVALSSNGYLEEALRAYRQMRRDGVPCNANAFATVVSLCGSLENEVPGLQVASQVIVSGLQNQVSVANSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDIVSYNVLIGGYAVLEDGTKAMQVFSWMRSAGIKPNYITMINIHGSFASSNDLHNYGRPLHAYIIRTGFLSDEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANVQLGHGEEALKLFIDMQHAGNKLDRVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMDEMLQVVPDQAIRPQQCWNTLISGYAKYGYFKEAEETFKQMVATGRKPDYVTQGYRLL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.155308 | 0.212362 | 0.759182 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g45410 | RBH | 0.082469 | 0.224121 | 0.153453 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0680200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0023960 | SBH | 0.155718 | 0.0 | 0.173995 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0023700 | SBH | 0.0 | 0.0 | 0.250996 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0023340 | SBH | 0.281213 | 0.471981 | 1.510199 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0023290 | SBH | 0.029227 | 0.017876 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0023920 | RBH | 0.000000 | 1.370273 | 0.894455 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0425000 | RBH | 0.7609405 | 2.1233635 | 0.695573 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0024230 | RBH | 0.0 | 0.055242 | 0.202486 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0434300 | RBH | 0.744611 | 2.051825 | 6.8991375 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0023970 | SBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0023950 | SBH | 0.062940 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0023530 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0023240 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0023440 | SBH | 0.000000 | 0.940202 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G023500 | RBH | 0.072770 | 0.920478 | 0.460464 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0023980 | SBH | 0.000000 | 0.000000 | 1.107522 |
