Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0673000 | OGI:11077530 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:27198361-27199970 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CACAGTTCACTGACAATTATATCATGTATTTGTGAACTGAAACTCGGTTTCTTCGATTAAGCTCTGCCCTGGAGCCTTTTGCACACTCATCCTCCTCATCAGTCTCCTCGCATCCCCTGCCTCCTCCCATCGTCCTGTTTCCGCATAAAGATTGGCCAACAGGACATAGTTCCCTGAGTTCCATGGTTCAAGGTTAATAAGTTCTTTCAGTGCCACCTCAGCTATGCTAATCCCAGAATGAGCATGGCATGCGCTTAGCAGTGCACCCCATATCGCAGCATTAGGTCTCATTGGCATCCCTTGAATCAATGCATATGCCTCCTCAAGAAGGCCAGATCTTCCAAATAAATCTACCATACAACCATAATGCTCAATTACTGGCTCAATACCATGCTCTAGCTGCATGCTCTGGAAGATGTCCCTCCCAACATCCACAGCCCCAGCATGCGCACAGCAGCCAAGCACCCCCAGAAATGTCACTTCATTGGGCATCTCACCGTGTGTCCTCATCTCTCGGTAAAGCTCAATGCCCTCAATCCCATGGCCATTCAATGAAAATCCTGAAATCATGGTGTTCCAGCTCACCACACTCCGCTGTCGCATTCCCTTGAATACCTCCCTTGCACTATGAACATCACCACACTTGCAATACATATCCATCACTGCATTTGCAACATGTACTTTCCTGTCTAGCAACCCACTCTTACGTGCATGCTCATGTGCCCATCTCCCCACCCCGACATTCCCCAACCTCCCACAGACCGGCAGCACAGCAGCAAGGGTCCCATCATCCGGTGCCACCTCCCCCTCCCTGACCATCCTCTCAAAGCACAAGACCGCAATGTCATCCTTCTTGCACCAAGCACACCCCGCGATCATAACATTCCAAGAAACCACGCTCCTCCTGGAGCGCCTGTATCTCTGCATTTCGTCGAACAGGTGGCGTGCGGCACCAAGATCATCAGCTCGGAAACAGGCCGTGATGAGTGTGTTGTAGGCGACGGTGCACTTGTTCCTCTGCGTCATTTCGTCAAACAGGACGCGGGCGTAGTGGAGAGGATATGGCTTGAGGAGCGCGAGAGAGATGGCGTGATGTGAAAGGAAACCGAGGCGGAGAAGAAGCGCGTGGACTGCGGAGAGGAGAGAAAGGGACGATACGCAACCTAGGAGGGGCAGGAACGAGAGGCGGTCGGGCGCGTGGAGGCGGCGGAGAGAGGAGAGGAGCCGGAACGCGAGCGGCGGCGAGGAGGCCGAGAGGGCCTTGATGGCGGCGTTGAGGAGAGGCAGCGGAGGCGGCGCGTGAGGCGGGACGAGGCGGAGGAGCGGGAGAGCCGGCGGCGGCGGGGAGGAGAGGAGCAGCAGCGCGGCGAGGGAGTGGTGGTGCGGGGACGGCGGCGACGACGGGAGGCAGTGTCGGACGGCGAAGGCGAGGAGCTCGAGCGGCCGCCGCCGCGCGGGAGGGGAGTGGTGCAGGAGGTGGAGGAGGCGCCGCTCCGCCGTGCGCGGGTGCCACCCGTCCGGCGTCGTCACCGCGGCGGACAGCGCCGGCGGCTCGCCGTCGCCGGCCATCGGCGGCGCGCGGCGGAGGTCTGAACCGCGCGGCCACGTTT
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| CDS seq | ATGGCCGGCGACGGCGAGCCGCCGGCGCTGTCCGCCGCGGTGACGACGCCGGACGGGTGGCACCCGCGCACGGCGGAGCGGCGCCTCCTCCACCTCCTGCACCACTCCCCTCCCGCGCGGCGGCGGCCGCTCGAGCTCCTCGCCTTCGCCGTCCGACACTGCCTCCCGTCGTCGCCGCCGTCCCCGCACCACCACTCCCTCGCCGCGCTGCTGCTCCTCTCCTCCCCGCCGCCGCCGGCTCTCCCGCTCCTCCGCCTCGTCCCGCCTCACGCGCCGCCTCCGCTGCCTCTCCTCAACGCCGCCATCAAGGCCCTCTCGGCCTCCTCGCCGCCGCTCGCGTTCCGGCTCCTCTCCTCTCTCCGCCGCCTCCACGCGCCCGACCGCCTCTCGTTCCTGCCCCTCCTAGGTTGCGTATCGTCCCTTTCTCTCCTCTCCGCAGTCCACGCGCTTCTTCTCCGCCTCGGTTTCCTTTCACATCACGCCATCTCTCTCGCGCTCCTCAAGCCATATCCTCTCCACTACGCCCGCGTCCTGTTTGACGAAATGACGCAGAGGAACAAGTGCACCGTCGCCTACAACACACTCATCACGGCCTGTTTCCGAGCTGATGATCTTGGTGCCGCACGCCACCTGTTCGACGAAATGCAGAGATACAGGCGCTCCAGGAGGAGCGTGGTTTCTTGGAATGTTATGATCGCGGGGTGTGCTTGGTGCAAGAAGGATGACATTGCGGTCTTGTGCTTTGAGAGGATGGTCAGGGAGGGGGAGGTGGCACCGGATGATGGGACCCTTGCTGCTGTGCTGCCGGTCTGTGGGAGGTTGGGGAATGTCGGGGTGGGGAGATGGGCACATGAGCATGCACGTAAGAGTGGGTTGCTAGACAGGAAAGTACATGTTGCAAATGCAGTGATGGATATGTATTGCAAGTGTGGTGATGTTCATAGTGCAAGGGAGGTATTCAAGGGAATGCGACAGCGGAGTGTGGTGAGCTGGAACACCATGATTTCAGGATTTTCATTGAATGGCCATGGGATTGAGGGCATTGAGCTTTACCGAGAGATGAGGACACACGGTGAGATGCCCAATGAAGTGACATTTCTGGGGGTGCTTGGCTGCTGTGCGCATGCTGGGGCTGTGGATGTTGGGAGGGACATCTTCCAGAGCATGCAGCTAGAGCATGGTATTGAGCCAGTAATTGAGCATTATGGTTGTATGGTAGATTTATTTGGAAGATCTGGCCTTCTTGAGGAGGCATATGCATTGATTCAAGGGATGCCAATGAGACCTAATGCTGCGATATGGGGTGCACTGCTAAGCGCATGCCATGCTCATTCTGGGATTAGCATAGCTGAGGTGGCACTGAAAGAACTTATTAACCTTGAACCATGGAACTCAGGGAACTATGTCCTGTTGGCCAATCTTTATGCGGAAACAGGACGATGGGAGGAGGCAGGGGATGCGAGGAGACTGATGAGGAGGATGAGTGTGCAAAAGGCTCCAGGGCAGAGCTTAATCGAAGAAACCGAGTTTCAGTTCACAAATACATGA
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| Protein seq | MAGDGEPPALSAAVTTPDGWHPRTAERRLLHLLHHSPPARRRPLELLAFAVRHCLPSSPPSPHHHSLAALLLLSSPPPPALPLLRLVPPHAPPPLPLLNAAIKALSASSPPLAFRLLSSLRRLHAPDRLSFLPLLGCVSSLSLLSAVHALLLRLGFLSHHAISLALLKPYPLHYARVLFDEMTQRNKCTVAYNTLITACFRADDLGAARHLFDEMQRYRRSRRSVVSWNVMIAGCAWCKKDDIAVLCFERMVREGEVAPDDGTLAAVLPVCGRLGNVGVGRWAHEHARKSGLLDRKVHVANAVMDMYCKCGDVHSAREVFKGMRQRSVVSWNTMISGFSLNGHGIEGIELYREMRTHGEMPNEVTFLGVLGCCAHAGAVDVGRDIFQSMQLEHGIEPVIEHYGCMVDLFGRSGLLEEAYALIQGMPMRPNAAIWGALLSACHAHSGISIAEVALKELINLEPWNSGNYVLLANLYAETGRWEEAGDARRLMRRMSVQKAPGQSLIEETEFQFTNT |
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| Function | Pentatricopeptide repeat-containing protein At1g09190 [UniProtKB/Swiss-Prot:O80488] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0673000 | OsNip_11t0673000-00 | Chr11 | 27198361 | 27199970 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCCGGCGACGGCGAGCCGCCGGCGCTGTCCGCCGCGGTGACGACGCCGGACGGGTGGCACCCGCGCACGGCGGAGCGGCGCCTCCTCCACCTCCTGCACCACTCCCCTCCCGCGCGGCGGCGGCCGCTCGAGCTCCTCGCCTTCGCCGTCCGACACTGCCTCCCGTCGTCGCCGCCGTCCCCGCACCACCACTCCCTCGCCGCGCTGCTGCTCCTCTCCTCCCCGCCGCCGCCGGCTCTCCCGCTCCTCCGCCTCGTCCCGCCTCACGCGCCGCCTCCGCTGCCTCTCCTCAACGCCGCCATCAAGGCCCTCTCGGCCTCCTCGCCGCCGCTCGCGTTCCGGCTCCTCTCCTCTCTCCGCCGCCTCCACGCGCCCGACCGCCTCTCGTTCCTGCCCCTCCTAGGTTGCGTATCGTCCCTTTCTCTCCTCTCCGCAGTCCACGCGCTTCTTCTCCGCCTCGGTTTCCTTTCACATCACGCCATCTCTCTCGCGCTCCTCAAGCCATATCCTCTCCACTACGCCCGCGTCCTGTTTGACGAAATGACGCAGAGGAACAAGTGCACCGTCGCCTACAACACACTCATCACGGCCTGTTTCCGAGCTGATGATCTTGGTGCCGCACGCCACCTGTTCGACGAAATGCAGAGATACAGGCGCTCCAGGAGGAGCGTGGTTTCTTGGAATGTTATGATCGCGGGGTGTGCTTGGTGCAAGAAGGATGACATTGCGGTCTTGTGCTTTGAGAGGATGGTCAGGGAGGGGGAGGTGGCACCGGATGATGGGACCCTTGCTGCTGTGCTGCCGGTCTGTGGGAGGTTGGGGAATGTCGGGGTGGGGAGATGGGCACATGAGCATGCACGTAAGAGTGGGTTGCTAGACAGGAAAGTACATGTTGCAAATGCAGTGATGGATATGTATTGCAAGTGTGGTGATGTTCATAGTGCAAGGGAGGTATTCAAGGGAATGCGACAGCGGAGTGTGGTGAGCTGGAACACCATGATTTCAGGATTTTCATTGAATGGCCATGGGATTGAGGGCATTGAGCTTTACCGAGAGATGAGGACACACGGTGAGATGCCCAATGAAGTGACATTTCTGGGGGTGCTTGGCTGCTGTGCGCATGCTGGGGCTGTGGATGTTGGGAGGGACATCTTCCAGAGCATGCAGCTAGAGCATGGTATTGAGCCAGTAATTGAGCATTATGGTTGTATGGTAGATTTATTTGGAAGATCTGGCCTTCTTGAGGAGGCATATGCATTGATTCAAGGGATGCCAATGAGACCTAATGCTGCGATATGGGGTGCACTGCTAAGCGCATGCCATGCTCATTCTGGGATTAGCATAGCTGAGGTGGCACTGAAAGAACTTATTAACCTTGAACCATGGAACTCAGGGAACTATGTCCTGTTGGCCAATCTTTATGCGGAAACAGGACGATGGGAGGAGGCAGGGGATGCGAGGAGACTGATGAGGAGGATGAGTGTGCAAAAGGCTCCAGGGCAGAGCTTAATCGAAGAAACCGAGTTTCAGTTCACAAATACATGA
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| Protein seq | MAGDGEPPALSAAVTTPDGWHPRTAERRLLHLLHHSPPARRRPLELLAFAVRHCLPSSPPSPHHHSLAALLLLSSPPPPALPLLRLVPPHAPPPLPLLNAAIKALSASSPPLAFRLLSSLRRLHAPDRLSFLPLLGCVSSLSLLSAVHALLLRLGFLSHHAISLALLKPYPLHYARVLFDEMTQRNKCTVAYNTLITACFRADDLGAARHLFDEMQRYRRSRRSVVSWNVMIAGCAWCKKDDIAVLCFERMVREGEVAPDDGTLAAVLPVCGRLGNVGVGRWAHEHARKSGLLDRKVHVANAVMDMYCKCGDVHSAREVFKGMRQRSVVSWNTMISGFSLNGHGIEGIELYREMRTHGEMPNEVTFLGVLGCCAHAGAVDVGRDIFQSMQLEHGIEPVIEHYGCMVDLFGRSGLLEEAYALIQGMPMRPNAAIWGALLSACHAHSGISIAEVALKELINLEPWNSGNYVLLANLYAETGRWEEAGDARRLMRRMSVQKAPGQSLIEETEFQFTNT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.155513 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g44930 | RBH | 0.0 | 0.108784 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0673000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0023470 | RBH | 0.095903 | 1.695173 | 0.408337 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0023390 | RBH | 0.0 | 0.692405 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0023040 | RBH | 0.544117 | 0.0 | 0.427711 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0022850 | RBH | 0.045916 | 0.032049 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0023050 | RBH | 1.348023 | 0.0 | 0.730462 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0409600 | RBH | 0.3560675 | 0.8803255 | 3.144579 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0023890 | RBH | 0.0 | 0.0 | 0.315987 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0428900 | RBH | 0.343609 | 1.454467 | 2.312351 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0023700 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0023760 | RBH | 0.220443 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0023230 | RBH | 0.0 | 4.078962 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0022870 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0023000 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G023260 | RBH | 0.0 | 0.574564 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0023680 | RBH | 0.0 | 0.0 | 0.0 |
