Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0667700 | OGI:11076800 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:26943016-26946885 | ||||||||
| Gene Symbol | RLCK348, OsRLCK348, RLCK347, OsRLCK347 | ||||||||||
| DNA seq | ACGAGTACACTGCTTGCTGCCCACTGAACGCCCAAACTGGTGTTCTGTGGTGAAACCTTGATTTCAGGTATGCAGTATGCTGTGGTTTCTTTTTGTTTCTCTTCTCTTGAGTCTTGACAGTGTATGCTTGGATCACCTGACTCCTTTTTAGTATTGCTTTTTCATCTTTCTGATTGTAGTTTGATCTCATGCTCATCAATTTAACTACCTGTCCTGGCAGGCAAAAACTTGAAATTGGCAATTGATTGAGAGCAGGCAGCTGCTGGCTGAAAGGTGAGAAAGCAGTGAAGCTATGGCACATTTACAGTGGGAAGGCATGGATCGAATGGCTACTATTGCGCAGCTGACAGGAGTGGACGCTCTGGGGCTCATCTCAACGATCGTGCAGGCGGCGCAGGCAGTTTGCCGGAACAAGGAGACCTGCCAGGAGCTGGTGCAGGAAATTCAGCTGATCCGCGACCTCCTGCGGATGTTGCAGGACCCAGAGATGATGTGTCGGGAAGAGATCGTGAACGTGCTCAGTGGGCTGGAGGGGACGCTTAAGGAGGCGTATGCCCTTGTCACTTCCTGCAGGGACTGCTCAACCATGTACCGTTTCTTCATGGGTTGGAAGCAGGCAGACCAGTTCCGTCGCATCAAAAAGAAGATCGGCAAGCACCTCCGTTTCTACCCCATGATCAGCCATGCCGACCTAACCCGTCGTCTCGAAAAACTTGCCAACAGTGCTGCTTTATCAACATGCTCATCCCAGGTATATTTCGTCATGTTCACTGTTTCCAATCGCAGGCTTCCAGAACTACAGTGTAATATATGGTCCAGCATCTATTCCAATTTACCAGTAAACTTGACTACATCATGAGTTCTGGTATTTTGTGTTCATTGTTCTAGAACCCCGCTTTCTTTATTATGTACGATTTATTATATTGTTTCAGGATGCACAAGATGTACCGGCATCATCATCGACCAGCCACTCAAACCCTGAAGCTAGGTCAGATAGTAGCTATGTGATTTTTGTTTTGCTACCTGTATGTCGACACATTCTTTTTGTTGGCTGTACTATTCAATTTGTTCGGAGTTTTATGCTGGGGTACAGTTCTGTATTGGACTGTGCTCTTAGTTCAGTAAATCGAACTGGATATTATTTCGGTTTCCCATGTTTGACAGTTATGTCCTGTTATGTGGTTTTATGCATATATTTTAAAAATGCCATCCATAGTTTTCCTGATTATCTAGTGCATTCATAATTTATTTTTCAAGTGAATTATTTTGCTGTCATGTCATTTTAGTTCAAGGTAGTGCATTCATATACTTTGGAAGACCACAGTTTTATACAGTAACAACTCTTGTGTGAATATATTGCTATATTCACTGTAATTTATTTGGGAATTGTTTTGTTATGTGCTGCTCAAAGCATAATTTCAACAGGTTCAGTAACCGGTGACCATTTCTTTTATTTTTGTGTTGTTGTTCAGTAATATTCTAATTTTATGAGTCTGAGAAACATATCATTACTTCTGCAAAGCACTCAAATTGCTATTCAATGTCATTTCAGGGCTGAAGAGGTCAATGACGAGTTTGAAAAAGGCGAAGTAGTAACCCAATCTATTAATGAGGTGGAACGTCATGAAGCAGGTATTTCTTTCAATCAAAATAGGGGATTTTGCACGCAATTTACGCTGGCTAGCTAGTTAAAGTGGATTTGTTGTACAACTTTGAAATCCTTTTTTTTGGGTGAAACTGAAATCCTAAATTATACTTCGTGTACAATATATATTAAAGGACTTGAATCAATATGCAAGTCAATTCTTCTGTTTCTATATAGAGAGAAGATTTCCTGTGTACCCCTAAACTTTGTCTAATCCTTCCCTGCGCTCATTCACTTTTGCATACCCCAAATTTTAGTTTGGATCCCTTCCGCACCCTTTCCAGTAGTTGACCATTAAATTCTTATGGAAAAGTCCATTGTACCCTTTGGTGTGAAGAAACTATATATTTATGTAGTATATTATTGGAGTATAGAAATTTTTTGTATGAGACTTTTATTTATTTATGAGTTTGTTATGTGAGATATTATTTACGATAAAATGTAACTAATGAAAAGAGTATAGAAGAGATTCAAACTAAAATTTAGGGGTATGCAAGGAAATGAGGAAAACTCAGGGTTGAGGGAATTTTCTCTTCTATATATATACTATCATTGTACTTTGTATATATATAACCATTGTTATCAATCTACAATGTTATAATTTGGTCCCATCATAATTAATGTGGTAATTTATATGCTGTGAGAGCGAACGTGGTATGATGTAATCGACTTTCTTGCTCAGGTCACCAGGATGCAGTGCAAACATCGTCGGTTAGGAAATCAAGATCTTGGTGGCATGATGTAATATCCTCGAAAAAGGTAGAATTTGGATTCCCCTTGCTAAGGATGCCTCCAAAATTGAATTGCTCTAGTTTCACTCCTTTAATTACCATGTATCTCTGTTTTGTACCTCTATCATGTAGGCTGCAGATGCAGTGAAAGCACATGTAGTGCCCCGCGCGATCGAGTTGTTCAGTTTGTCAGAGCTCGCAAAGGCGACCATGGACTTCGCTCTTGACAGAGAGATCGGTGAAGGCAGCTTCAGCAATGTGTACAGGGGAATGCTTCCTGACGGGCGGGAGGTGGCCATCGAACGCAAAAAGGTGGACTCTAGTGCTCGGGGGATGGAGGCATTTCGTGCAGAGGTTACAATCCAGTCCCTCCTTCACCACAAGCATATTATCCGCCTGGTTGGCTGCTGCGTGATGGAGGAGGAGGAACACTGGTCATTGTTCCAGAAAAAGAACATGGTGGAGAAACGGCTGCTCGTCTTCGAGTATATGGAGAACGGCTCGCTTTTCGACCACCTTCATGGTCCATCCACATCATCCTTCTCACCGGTGACGGCGTCCTGGAAGACGCGCATTGAGATACTGCTGGGCGTGTCACGCGCCATTGAGTACCTGCACTCATACGCCACGCCGGCGGTTATCCACTGTGACATCAAATCGTCCAACATCCTGCTTGACTCCAGCTGGTCACCGCGCTTGTCGAGCTTTGACATAGCGGTTAGCTGCGACGAGGCGGAGTGTGTTGACATTTGCGTCCGTGGCACGTTGGGATATCTTGACCCGGAGTTTGTACGCACAAGAACTCTGAAGCCAGCGAGCGACGTCTATAATTTTGGCGTTGTGATGCTGGAAGTATTGTCAGGCAGGAGGGCAATTTGCCGCTGGAAGGAGGATCATGGCGATGGCGATGGCGATAGCCCCATGGATTCTTTGGTTAACCACGCGCTGCCACTCATCGATGCGGGGCAGGTGCTCCATCTGCTGGATAGGCGGCCGGCGGAGGAGCCAACGCCAAGGCAGCTCGAGGCGGCGGACCTGGTGGCACGCACGGCAGCGCACTGCCTGCAAGAGAATGGGGACGACCGGCCGGCCATGTCGGACGTCGTGACCAGACTCCAGGCGGCGCTGGAGCTCGTCCGTTGCGATGATGAGTAGCATGGTCTGGGCATCTTCACGGATGCATGATTTATAGATCATAATACTGCTGTAGTGCTGTTACACCTTCCCGAGATGTAGAGGCCGGGTTAATACAATCTGTTATCTAAAAAAATTTGGCATCCTAGCTCCCTGGTGAAGGATATGATATGATATAGACAAATTAATGTATGGGATTAATACATGATGAGATTGTAAACAAGTTTCACTGCGGTCTTTGTGTAGTGAGGCTATCCAAAATTTTCTTTCCACTGGAATTGCTAGTTAGAATCATACTTCTAGTCCGATTTTATAGTTCTTTTTCAGACATGTCCAAAACAGGCATTGTTTTTTGCTCTG
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| CDS seq | GGATATCTTGACCCGGAGTTTGTACGCACAAGAACTCTGAAGCCAGCGAGCGACGTCTATAATTTTGGCGTTGTGATGCTGGAAGTATTGTCAGGCAGGAGGGCAATTTGCCGCTGGAAGGAGGATCATGGCGATGGCGATGGCGATAGCCCCATGGATTCTTTGGTTAACCACGCGCTGCCACTCATCGATGCGGGGCAGGTGCTCCATCTGCTGGATAGGCGGCCGGCGGAGGAGCCAACGCCAAGGCAGCTCGAGGCGGCGGACCTGGTGGCACGCACGGCAGCGCACTGCCTGCAAGAGAATGGGGACGACCGGCCGGCCATGTCGGACGTCGTGACCAGACTCCAGGCGGCGCTGGAGCTCGTCCGTTGCGATGATGAGTAG |
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| Protein seq | GYLDPEFVRTRTLKPASDVYNFGVVMLEVLSGRRAICRWKEDHGDGDGDSPMDSLVNHALPLIDAGQVLHLLDRRPAEEPTPRQLEAADLVARTAAHCLQENGDDRPAMSDVVTRLQAALELVRCDDE |
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| Function | Putative receptor protein kinase CRINKLY4 [UniProtKB/Swiss-Prot:O24585] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0667700 | OsNip_11t0667700-01 | Chr11 | 26946159 | 26946885 | + | RAP2018-11-26 | ||
| CDS seq | GGATATCTTGACCCGGAGTTTGTACGCACAAGAACTCTGAAGCCAGCGAGCGACGTCTATAATTTTGGCGTTGTGATGCTGGAAGTATTGTCAGGCAGGAGGGCAATTTGCCGCTGGAAGGAGGATCATGGCGATGGCGATGGCGATAGCCCCATGGATTCTTTGGTTAACCACGCGCTGCCACTCATCGATGCGGGGCAGGTGCTCCATCTGCTGGATAGGCGGCCGGCGGAGGAGCCAACGCCAAGGCAGCTCGAGGCGGCGGACCTGGTGGCACGCACGGCAGCGCACTGCCTGCAAGAGAATGGGGACGACCGGCCGGCCATGTCGGACGTCGTGACCAGACTCCAGGCGGCGCTGGAGCTCGTCCGTTGCGATGATGAGTAG
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| Protein seq | GYLDPEFVRTRTLKPASDVYNFGVVMLEVLSGRRAICRWKEDHGDGDGDSPMDSLVNHALPLIDAGQVLHLLDRRPAEEPTPRQLEAADLVARTAAHCLQENGDDRPAMSDVVTRLQAALELVRCDDE |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0667700 | OsNip_11t0667700-02 | Chr11 | 26943016 | 26946742 | + | IsoSeq | ||
| CDS seq | ATGGCGATGGCGATGGCGATAGCCCCATGGATTCTTTGGTTAACCACGCGCTGCCACTCATCGATGCGGGGCAGGTGCTCCATCTGCTGGATAGGCGGCCGGCGGAGGAGCCAACGCCAAGGCAGCTCGAGGCGGCGGACCTGGTGGCACGCACGGCAGCGCACTGCCTGCAAGAGAATGGGGACGACCGGCCGGCCATGTCGGACG
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| Protein seq | MAMAMAIAPWILWLTTRCHSSMRGRCSICWIGGRRRSQRQGSSRRRTWWHARQRTACKRMGTTGRPCRT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.670455 | 0.756338 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0663900 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g44560 | RBH | 0.203807 | 0.227114 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0667700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0023040 | RBH | 0.000000 | 3.319043 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0023120 | RBH | 0.0 | 2.899904 | 0.172379 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0022750 | RBH | 0.0 | 0.0 | 0.340761 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0022440 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0022700 | RBH | 0.0 | 7.580804 | 7.769035 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0398400 | SBH | 0.011596 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0023600 | RBH | 0.141267 | 0.059209 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0422700 | SBH | 0.0117575 | 0.024519 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0023230 | RBH | 0.0 | 0.168695 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0023350 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0022940 | RBH | 0.000000 | 6.992527 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0022670 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0022560 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G022920 | RBH | 0.0 | 1.143171 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0023350 | RBH | 0.0 | 26.397360 | 0.0 |
