Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0661800 | OGI:11075340 | 8/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:26577121-26582071 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTGGTGAAAGTTACACGACAGTACGGATGGGATGATACATATGAGGTATCGCCTATATTTTCGAGTATCATCCGAACGGGATACTGTCCTGTAGCATTAAAGTTTAATGATATTAATCGTATAGGCATATAGTACATACTTTAGTAAAAAAAACTTGTTGTCATTTGCTACTATAGGAGCCTACAGTCATTAACAACACCAGACATGCGTCCGGCGAAAAAATTACACGGACATCCAAACACGCAACATTACAATCCCGAGATGCTACTACCCAAATGGATGCGTGATGTCGCGATTAATGCACATGCGTAATGTAAGAACCATCACATAATCCATGGATTTCCGGGCACCCGAAATACGCGAGAGAAAAATAAAGCCTCATCGATCGGTTCGAGGAATCATGCAGATGCAGGGTCATGGATCAAGCACAGGCTGCGTCCTCTGCCGGAGCTTAGATTCATGGCTTCCTCTGCTCTGCACATCACATTACGGCGCAGGAGGTTGGATCATCCTCAATGGAATATTGGTAGAGAGCGTAGCCTTGCCCGTTCGGGTAGCCCGCGACGCCGGCGTCGGAGTAGGAGCCCTGTAATGGCGGCCTAGCCGTAGCCGCGGTGGAAGCCTTCTCGCTTCTCATCGAATTGCTGCTGTTTACCCCGTTCTGCTGCACGCTCTTGTTGCCGTTCTTGCAGGTGTAGCTCACCCTAACCTTCGAACAATAGAGAGAAGAAGATCATAGGTAGGCTCAATCAACTCAAGCCTCAAGGAATGAAGTTAATAATGCGTACTACTCTCCCGTCCTAAAATAAATGTAATTTTGCACTGTTTTTATCTAACATTTGACATTCTTTATTTGAATTTTTTTATGATTATTGTTTTTATTGTTATTAGATGATAAAACATAAATAGTACTTTATGTGTGATTATTTTTTCGTGGGTCAAACGTTGGACACGAATAATCACAGTTGTACTTATTCTGGGATGGAAGTAGTACTATCTGTCATCCAATGCACTACACGGGGTCACGGGCTATAATTGTTACTAATATTAAAATTGTAACTGCTATACATTGAACATGTTGATTTTTATGAATTATTATAGTGATTTTGGAGAAAAGTCACGTCTGTTACAGCTCGCTGATTATTAATTTTAGTCTTCAAAGCTGAACTAACAAAACACTAAACTCACTCTAGAGCTCTTTGGTTCTAAAGCTCCCACCTTTTAACTCTGAATTAGACCCCAACAATCCAAACATGTGGGCTAATTTGGGGCTAAAGTGAATTAGCCATTCTCAAAACATTAGCCTCTTCAAAAGGTGCTAATGGGGCTAATTTTCTGTGTGGACCACTTAAAAGTAGCCCTATCTCCCCCCTCTCTTTCCTCTTTCTCTCTCTTCGCCTTTTAGCCCTGAATTAGCTCATGGATCTAAACATGTCACTCTAGACTAATGTTTAGTCTACCAATTCAAGATTAAATATTACTCCGTAACTCTTAAAATTAGCTCTAGGCTAATCTTTCGGACAAGACCTAGGATAGGTTCAATTTCCAGCAAGTCATATTAATTGATCATAACAATATACAAACAGCAAAAGGAAAAAAAAAGAAAAAACTTTGATAATAAAGCAGATCGAACAAGGGGCCATGGAAACTTACCCATAATTACTAAATATTTACTTCTATCTCCGTCCTAAAATATACTCCCTCAATCCCAAAATAAGCGTAGCCATGAGTTTTCGTGTCCAACTTTAATCGTCCGTCTTATTTAATTTTTTTTAACAAAACAAAAAAAAAGTCTCGCATAAAGTACTACTCCCTCTATCCCATAATATAAGGCGCGGTTAAACTTGTCACGGTCTCCAAAACTAATCTTTAGCTTATAATTTCTCATATATTATAAGGTTTGTAGCAACAAAATTATAACCATATGAAAGTAAATTTAAATGTCAATATAATGCTATAATTTTTACCAAATAATATTTATTTCATACTATACTAAGTGTTGGTCAAATATTTTAAATGTTGATTCTTGAAATGCGTGCACGCTTTATATTATGGGATGGAGAGAGTATTCATGTTTTATAATAATGGTGGAGAGACCCGGGAGGCGACAGTCGCCGAGGCCCGCTCCTCCTACGCGCGCGCAGCCTCGCCGCGGCCGGCGACGCTGCCCCCGGTGGCATTGCCGGCGGCGGCGCTCGCCTCCCCCCCCAGCACCACGACCTCCCCACACCATTAACTTCCTCTCCTTTTCTTTTCCAGATCCAAAACTCTCTTCATGCTAGCTTGTCTCCCGCCCTGTTCCTCCTGCCTCCGGCGACGGCAGCCGGCTGTGGTGGTGGGTGGCCGTCAGATCCGCCTCCTACCTCGCCCCAGCAGCCTCCGGCGACGGCAGCCGGCCGTGGTGGTGGGTGGCCATCAGATCTGCCTCCTACCACGCCCCTGCAGCCTCCGGCGACGGCAGCCGGCCGTGGTGGTGGGCAGCCGTCAGTTCCGCCTCCTACCATGTCCCCCTGCCTCCGGCAAGGTCGTGTGGTGGGGACGGCTTGCTGCCTGCAATGTCGTCGGTGGGCTGCGACGTCGCCTGTTGCCGGTGCCCAGATCCACCTTCCCCTTGGCAGCATGGCCGGAATTGGTCAGCTCAGTGGCGACCGACAACGCTGCTGACTTTGCCGATGTCTGCTCCATTTTCTTTTCTTCTTGTCTACCCGGCGGTTGGAAGCATTTTGAGCTTTGCCACGATCAGCTCAGCCCAAACCTGCATGTCTAGGAGTTTGCTGGTGCCTCGGCCGCTCTGAATCTCCTCAATTCTAGCATGCTTCTCCTTGGCTCGCTTGGGTTTGCCTATTGGTTGGAACATGTGCTTCTCCGGCGGTCGTGATGCTCCCGATCTTTGTTCTCTTCTGTTGATGTTTCATCCATCTGTAGATCCCCATCTCTTTCATTTCTCTTTTGTTCAGTCCCCTGATTGCCCTTCACCCTCTCTGCTTGGGTGTCCCTGACTGCAATGTTTAGCGGTCCTTCCTCCTATGGGGCTTTCTTCCCCCGAAGGGCGTTGAACTGGCTAGCAATTTGATAAAGCTCGATTGAAGACGGCTTGATGCGGGTGGCCTATGGCCTCAACTTTCAGTGGCCTTCCCTCTTTTGGGGCTTCCTTCCCCCAATAGACGTCGGGGGGCATTGATTCAAGTAGCAACATGACTAAGTCGTACTTCTGACGGCTTGATGCGGGTGGTCTTCGATAACCACAGTCTTTCGACTGCCAGAGAACCAAGCCGGTATGCGCGTGGCACTGAGGCCCTCCGGCACCTTCGATTCTTGGTGTTTCAAGTCTGCATGCGAAGTGGATGATGTTCAATTAGGGTTCTAGCATTAGTTTGATTTGGAATTTGGTCGGGTGTTTTTGCAGGTGGCAAACGTCAAAGCTTCTCAGTGCGTGGTAGGGAGGTTGTGATGCGTCTGTATTCTCTTCTCTGTATACCCCCGTGTATTCTTTCTTATTATCCTCCAGGGCTCCTGTATTTACGCAGGTGAAACCTGCCCTGTGTAAGATCGTTGGAAGTAATATATTCAGGTGGGCATTTCGCCCCCTGGTGACCAGTCTAAAAAAATATAATCTAATAATAATAAAAACATTAATCATGAAACATTTAAAATAAGACGGACAATCGAAATTGGACACGGAAACTCATGGCAACGCTTATTTTGGGACGGAGGTAGTAATAATTTTTGGCTATATATATATAGAGAGAGAGAGTGAGTGACGAAGATAGTATAGATATCTTACTGAATTGTTTGCCTGGTGATGACTGTGAGCAAGGAGAGGGTCGATCTTCTCTTTGTGGATGGATTTGGCAGAGCTGATCTCTCTCACCGAATTTATCGAGGACCTGTTAGAGTTGATCTCTGTCTGGGATCTTACTATCGAAGAGTGAGCAGAGTTGATCTTTGTCCGCGATCTTACTATGGAAGAGTGAGCAGAGTTGATCTCTGTCCGGGATCTTACTATCGAAGAGTGAGCAGAGTTGATCTTTGTCCGCGATCTTACTATCGAAGAGTTGGCAGAGTTGATCTCTGTCCACGATCTTCCCGAGGACGACTTGGCAGAGCTGCTCTCTCCTAGCGATCTTACCGAATAATTTGAGCTGCCGGTGTTGATCTCACTCTGCTTCCACCACGCTGAATTGTTTGCCAGCTGGTGATGACTGAGAGCCGGGTTCATCACTCTCAGTGATCTTACTGAACTGTTTAAGCGGCGGCCATGATCGGAAGCGGTGTGGTTGCCGAACATGATGCCGGCGGTGTTCTGCTTCATTCGTGCTGAATTGTTTGGGCGGCTATAACCAGGAGCGGCGTGCTGATGACTGGTCATCTTATCCTCGCGGACGCCGGCGTTCTAACAATAAGAACATGGATGATCGATGATCAATTAATTGGTCAACTCAATCAGCACAACGAAGAAAACAACTCCAGTTTGATTATCTATATTTATACTATATAGTACCGAATTGCTTGCACGGTGGTGATTGCGATCCACGACCACAAGGTGCAGCTCATCGATCTTCTTCGCCGTGCCTGCGCCTTGGGCGGCGAGGAGGTCCATGAGGCAGTTGCTGATCTTGTTATTGACGCTGTCCAGCTTGGCGTCCACCGCGCGGCTGCCCACGAGCCTGTACATCTGGCCGTCTCCGCAGCAGGACTCGACGAGCTTGTGCGCCTCGTCGAGGGCCTCGTTGAGGCTGCCCAGCATGTCCCACGTCGCCGCCGCCGCCGCCTCGCCGGTAGCCGCGGGCTTGTAGTTGTAGTTGCTCAGGATGCCGGCGACTCGCCGCGCGCGGTCGGAGAGCTCCAGGCACTTGGTCTGGTTCTGGCGAGCCTTCTTCGCCACCGTGGCGATCTTCATCGCCAGCTTTATCATCGCGCTCACGAAGCTGAACAACGACGCCGGCTCCAT
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| CDS seq | ATGGAGCCGGCGTCGTTGTTCAGCTTCGTGAGCGCGATGATAAAGCTGGCGATGAAGATCGCCACGGTGGCGAAGAAGGCTCGCCAGAACCAGACCAAGTGCCTGGAGCTCTCCGACCGCGCGCGGCGAGTCGCCGGCATCCTGAGCAACTACAACTACAAGCCCGCGGCTACCGGCGAGGCGGCGGCGGCGGCGACGTGGGACATGCTGGGCAGCCTCAACGAGGCCCTCGACGAGGCGCACAAGCTCGTCGAGTCCTGCTGCGGAGACGGCCAGATGTACAGGCTCGTGGGCAGCCGCGCGGTGGACGCCAAGCTGGACAGCGTCAATAACAAGATCAGCAACTGCCTCATGGACCTCCTCGCCGCCCAAGGCGCAGGCACGGCGAAGAAGATCGATGAGCTGCACCTTGTGGTCGTGGATCGCAATCACCACCGTGCAAGCAATTCGAACGCCGGCGTCCGCGAGGATAAGATGACCAGTCATCAGCACGCCGCTCCTGGTTATAGCCGCCCAAACAATTCAGCACGAATGAAGCAGAACACCGCCGGCATCATGTTCGGCAACCACACCGCTTCCGATCATGGCCGCCGCTTAAACAGTTCAGTAAGATCACTGAGAGTGATGAACCCGGCTCTCAGTCATCACCAGCTGGCAAACAATTCAGCGTGGTGGAAGCAGAGTGAGATCAACACCGGCAGCTCAAATTATTCGGTAAGATCGCTAGGAGAGAGCAGCTCTGCCAAGTCGTCCTCGGGAAGATCGTGGACAGAGATCAACTCTGCCAACTCTTCGATAGTAAGATCGCGGACAAAGATCAACTCTGCTCACTCTTCGATAGTAAGATCCCGGACAGAGATCAACTCTGCTCACTCTTCCATAGTAAGATCGCGGACAAAGATCAACTCTGCTCACTCTTCGATAGTAAGATCCCAGACAGAGATCAACTCTAACAGGTCCTCGATAAATTCGGTGAGAGAGATCAGCTCTGCCAAATCCATCCACAAAGAGAAGATCGACCCTCTCCTTGCTCACAGTCATCACCAGGCAAACAATTCAGTTAGGGTGAGCTACACCTGCAAGAACGGCAACAAGAGCGTGCAGCAGAACGGGGTAAACAGCAGCAATTCGATGAGAAGCGAGAAGGCTTCCACCGCGGCTACGGCTAGGCCGCCATTACAGGGCTCCTACTCCGACGCCGGCGTCGCGGGCTACCCGAACGGGCAAGGCTACGCTCTCTACCAATATTCCATTGAGGATGATCCAACCTCCTGCGCCGTAATGTGA
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| Protein seq | MEPASLFSFVSAMIKLAMKIATVAKKARQNQTKCLELSDRARRVAGILSNYNYKPAATGEAAAAATWDMLGSLNEALDEAHKLVESCCGDGQMYRLVGSRAVDAKLDSVNNKISNCLMDLLAAQGAGTAKKIDELHLVVVDRNHHRASNSNAGVREDKMTSHQHAAPGYSRPNNSARMKQNTAGIMFGNHTASDHGRRLNSSVRSLRVMNPALSHHQLANNSAWWKQSEINTGSSNYSVRSLGESSSAKSSSGRSWTEINSANSSIVRSRTKINSAHSSIVRSRTEINSAHSSIVRSRTKINSAHSSIVRSQTEINSNRSSINSVREISSAKSIHKEKIDPLLAHSHHQANNSVRVSYTCKNGNKSVQQNGVNSSNSMRSEKASTAATARPPLQGSYSDAGVAGYPNGQGYALYQYSIEDDPTSCAVM |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0661800 | OsNip_11t0661800-01 | Chr11 | 26577121 | 26582071 | - | RAP2018-11-26 | ||
| CDS seq | ATGGAGCCGGCGTCGTTGTTCAGCTTCGTGAGCGCGATGATAAAGCTGGCGATGAAGATCGCCACGGTGGCGAAGAAGGCTCGCCAGAACCAGACCAAGTGCCTGGAGCTCTCCGACCGCGCGCGGCGAGTCGCCGGCATCCTGAGCAACTACAACTACAAGCCCGCGGCTACCGGCGAGGCGGCGGCGGCGGCGACGTGGGACATGCTGGGCAGCCTCAACGAGGCCCTCGACGAGGCGCACAAGCTCGTCGAGTCCTGCTGCGGAGACGGCCAGATGTACAGGCTCGTGGGCAGCCGCGCGGTGGACGCCAAGCTGGACAGCGTCAATAACAAGATCAGCAACTGCCTCATGGACCTCCTCGCCGCCCAAGGCGCAGGCACGGCGAAGAAGATCGATGAGCTGCACCTTGTGGTCGTGGATCGCAATCACCACCGTGCAAGCAATTCGAACGCCGGCGTCCGCGAGGATAAGATGACCAGTCATCAGCACGCCGCTCCTGGTTATAGCCGCCCAAACAATTCAGCACGAATGAAGCAGAACACCGCCGGCATCATGTTCGGCAACCACACCGCTTCCGATCATGGCCGCCGCTTAAACAGTTCAGTAAGATCACTGAGAGTGATGAACCCGGCTCTCAGTCATCACCAGCTGGCAAACAATTCAGCGTGGTGGAAGCAGAGTGAGATCAACACCGGCAGCTCAAATTATTCGGTAAGATCGCTAGGAGAGAGCAGCTCTGCCAAGTCGTCCTCGGGAAGATCGTGGACAGAGATCAACTCTGCCAACTCTTCGATAGTAAGATCGCGGACAAAGATCAACTCTGCTCACTCTTCGATAGTAAGATCCCGGACAGAGATCAACTCTGCTCACTCTTCCATAGTAAGATCGCGGACAAAGATCAACTCTGCTCACTCTTCGATAGTAAGATCCCAGACAGAGATCAACTCTAACAGGTCCTCGATAAATTCGGTGAGAGAGATCAGCTCTGCCAAATCCATCCACAAAGAGAAGATCGACCCTCTCCTTGCTCACAGTCATCACCAGGCAAACAATTCAGTTAGGGTGAGCTACACCTGCAAGAACGGCAACAAGAGCGTGCAGCAGAACGGGGTAAACAGCAGCAATTCGATGAGAAGCGAGAAGGCTTCCACCGCGGCTACGGCTAGGCCGCCATTACAGGGCTCCTACTCCGACGCCGGCGTCGCGGGCTACCCGAACGGGCAAGGCTACGCTCTCTACCAATATTCCATTGAGGATGATCCAACCTCCTGCGCCGTAATGTGA
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| Protein seq | MEPASLFSFVSAMIKLAMKIATVAKKARQNQTKCLELSDRARRVAGILSNYNYKPAATGEAAAAATWDMLGSLNEALDEAHKLVESCCGDGQMYRLVGSRAVDAKLDSVNNKISNCLMDLLAAQGAGTAKKIDELHLVVVDRNHHRASNSNAGVREDKMTSHQHAAPGYSRPNNSARMKQNTAGIMFGNHTASDHGRRLNSSVRSLRVMNPALSHHQLANNSAWWKQSEINTGSSNYSVRSLGESSSAKSSSGRSWTEINSANSSIVRSRTKINSAHSSIVRSRTEINSAHSSIVRSRTKINSAHSSIVRSQTEINSNRSSINSVREISSAKSIHKEKIDPLLAHSHHQANNSVRVSYTCKNGNKSVQQNGVNSSNSMRSEKASTAATARPPLQGSYSDAGVAGYPNGQGYALYQYSIEDDPTSCAVM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.906275 | 0.849691 | 0.337509 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0665600 | SBH | 2.042907 | 1.684258 | 1.788975 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g43990 | RBH | 0.573917 | 0.535165 | 0.081360 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0661800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0022970 | SBH | 0.0 | 1.902923 | 1.106917 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0023000 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0022630 | RBH | 0.568344 | 0.0 | 0.373224 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0022160 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0022520 | RBH | 0.0 | 0.0 | 2.174532 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0395100 | RBH | 3.0875525 | 10.6475085 | 2.2705535 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0023510 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0417900 | RBH | 0.353557 | 0.0187905 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0023090 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0023200 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0022850 | SBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0022330 | RBH | 0.136658 | 0.0 | 0.379048 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0022340 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G022780 | SBH | 0.0 | 0.0 | 0.256761 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0023220 | SBH | 0.0 | 2.858318 | 0.0 |
