Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0639400 | OGI:11072300 | 12/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:25279810-25280531 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GCTGCAAATCTCTATATACGATTTCAGGGTCCGATCCCGAGCCTCAGATAGGGCCACGTGGCATCAAGCGTTGCGCTCCATTCGAATTCTCGATGGAGAATGTGCCACGTATTCCCACCAATCCCAGGACCGTTAGATGGTACATCAACGGTGAAAAATCGTCTGGATGAGTTATTTACAAAACGTAAGATCTAATCATCTGGAAGATTGGAAGAGTCCGGAGTATTGGACATGAATCCAGAAAAAAAAAATCGCAAGAAAAATATAAATTCCTATCTCCTACTCACCGTGCCTCCGCCCTGCCTCTATCCACATCGCCAGCACCTGCATCGGCTGATGAGCAGGGGGTGATGGCGGCTCGATCTACACAGCCTGCTTTGCCTAGACATGCGTCGCCTTAGGGGGGAGGCGAGAAGCGGCGGTCGCGGCGGTGCAGGAGCTCCTGCGGCACGTCGGCGACGGCGACGACGATGGCGTTCTCAATCACGTCGTAGATTCTGCGTGGAGTCAGCGGCCCCTCAGAAAAGCTCGCGCCACCGTTCCAGCTGGTTGGCCAGAGTCGCCTCGGCCACGGCCACGCCCACCCGCTCCCCTCTGCCCCCAACTCCGATTTCTTGCGCTTGCGCCGCCGGAGGCCGCTCCCGTTGGGCACCGGACCCGCCACGCGCGCGCTCCTCCTGATGGCCGCCGTATTCTCCTCTCCGCTCGCATGGTGGTGGCCT
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| CDS seq | GGCCACCACCATGCGAGCGGAGAGGAGAATACGGCGGCCATCAGGAGGAGCGCGCGCGTGGCGGGTCCGGTGCCCAACGGGAGCGGCCTCCGGCGGCGCAAGCGCAAGAAATCGGAGTTGGGGGCAGAGGGGAGCGGGTGGGCGTGGCCGTGGCCGAGGCGACTCTGGCCAACCAGCTGGAACGGTGGCGCGAGCTTTTCTGAGGGGCCGCTGACTCCACGCAGAATCTACGACGTGATTGAGAACGCCATCGTCGTCGCCGTCGCCGACGTGCCGCAGGAGCTCCTGCACCGCCGCGACCGCCGCTTCTCGCCTCCCCCCTAA |
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| Protein seq | GHHHASGEENTAAIRRSARVAGPVPNGSGLRRRKRKKSELGAEGSGWAWPWPRRLWPTSWNGGASFSEGPLTPRRIYDVIENAIVVAVADVPQELLHRRDRRFSPPP |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0639400 | OsNip_11t0639400-01 | Chr11 | 25279810 | 25280531 | - | RAP2018-11-26 | ||
| CDS seq | GGCCACCACCATGCGAGCGGAGAGGAGAATACGGCGGCCATCAGGAGGAGCGCGCGCGTGGCGGGTCCGGTGCCCAACGGGAGCGGCCTCCGGCGGCGCAAGCGCAAGAAATCGGAGTTGGGGGCAGAGGGGAGCGGGTGGGCGTGGCCGTGGCCGAGGCGACTCTGGCCAACCAGCTGGAACGGTGGCGCGAGCTTTTCTGAGGGGCCGCTGACTCCACGCAGAATCTACGACGTGATTGAGAACGCCATCGTCGTCGCCGTCGCCGACGTGCCGCAGGAGCTCCTGCACCGCCGCGACCGCCGCTTCTCGCCTCCCCCCTAA
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| Protein seq | GHHHASGEENTAAIRRSARVAGPVPNGSGLRRRKRKKSELGAEGSGWAWPWPRRLWPTSWNGGASFSEGPLTPRRIYDVIENAIVVAVADVPQELLHRRDRRFSPPP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.331431 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0639400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0020850 | RBH | 0.057666 | 0.424999 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0381200 | RBH | 0.80342 | 0.705147 | 1.566536 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0401200 | RBH | 1.283064 | 0.772293 | 0.44244 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0021750 | RBH | 0.280064 | 0.188764 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0021840 | RBH | 0.429510 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0021490 | RBH | 1.868438 | 37.689095 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0021100 | RBH | 0.671300 | 0.0 | 0.872113 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0021260 | RBH | 0.167631 | 1.383716 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
