Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0630300 | OGI:11070670 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:24716906-24719902 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGAGGCAGTTGTGGCCGCCATCAAGAACGAAGCAAGCCTACTTCCCAACTGCTACATACAACATATCCGCATATCGCGGGAGGAAGGATTGGAGGATATCGACATATCGCGGGAGGAAGGATGGGAGGAAGGGGGCCACTCGATTGAGCAACAAGAAGAGATCACTAATCCCCATACCGAGCACACAATAACCCCTGCCACATAGTTCATCTGCAATTTCATCTATTCAAGGTACGTAACTAGTATAGTATTTGATAACAATCAATGGTTTCCCTGAGGCTCATCTGATCATATGTTATCTTATTATTAGTTATGTATACTTCCGGTTCCTTGTTGGCAGAAGCACATATATATTTGTTCCTTTAATTGGTTTGTGATGTATCAATTGGCCGGCTGGTTCCTTGGGTGGCTACTATAGTGCTGGGGGATGCAAACTTCTTGTACGTTTCGTTGTGTGCTGCCTAGGCTTTTAGTTTCTTTGTTCTGTAACTGAGCAATAATTGGAGCTTGAAAATGTGCCCATGTTTGGTGTCTTTGTGTTTCTGGACGTTTGATATGATATATAAACTAGATATCATTTTCATCAAACGTGCAAATTGATAATGAATGCTCGACTGTTGTATAAGATACAGCTGCTGTGCACTAATGCTATTTGCTTACTTTATATTCAGTCATGAATTGAGACATCATTGATACAGTAGTTACCCTTTGGGTGTTCAACATATTTTCATGGATGATCTGGTTTCACATTTTATAAATTTAATAATTTTGGCCTTGTTGCCAATTGAAAGACCGGTACTATTATTTAAGCATGAAACCACAGATTAAGGTTATATATCTTATTAATTTGTAGTGATAATTTATAGCATTTATGTTTTATCTTAATGATTTCAAAAAAGCAGAGCGCTATATCTGTGCCCATGTTAGGCTTCACTGGGGACCCAGATTTAGTTTCTTACTTTCTATTTTCAATTATATTATTGAGTTTTCCTTGTCTCAAGATATAGGTCTCCATGTTTTTCTGAACGCACATATGATTCCATTTAACGAGCACACACCGCAATACAAGCTTGGAGATCCACATTATGTCGAATCAAAAATTTGGAAGCATTTTTTTTGTCAAATCATGGGAGAGAAGAGTTCCGCACTTGAATTTTCAATTACGAAAGAGTGATCAAGATTACATGACCCTAGAGTCGGAAGGTTACAGTGATTGAAGGGGGAAGGGGGAAAAACGCCTCCTAATTAAACAAAGCCCCTGTTTAGGCCAGCTTAAGATTCTCATGAACAACTGGTCGCTTCTAAAAATCTGAAAAAAAAATGGGTTTCCTACCGTTTTGGTTATAGTTCACGTGATGGGCTGGATATGCATGCCAAATGAATTATTGTTTAGCAAAAAAGAAGCAAGTTGTCTAGCAAAAGAAAGGGCATTGGAGGCACATATGTATGGGTCATAGCTTCATCTTCTGTTTGACGAGGTCACACATATGCTTAGGCAGGTCCTAGACGACTGCCACCAAACCTAAAGAGAGCAGCCGTGGCAAGGAACGAGGTCTAGCCAACCAGCAGGGGAAAGAACTTGGTGCTAGACCTGGCGAGCGAACACGTAGTCAAGGAGGATGTGGTTCGTCATTTTCAGATCCTGGGCGCAAAAGGAACAAGCCGAGTGGTTGTCGATACCACGCTTTGATCTAGTAATACTCCCTCGTCTTTGTTTTCTCCACATACTCGTTTTCTCTACGGTTAATAAAAGAACACAGTACGTAGTATAGTAATATTTTAAAATCTTGCTTAACATATTTATTACTAGCTAAAACAGCTGTCTTTCGAGAGTGTACACAAAGAATCGACGGCAGGGCAACGGCTGCTTCCTGCAGCAGGTAAACAGGCACAACCGGACAGTGCACGTAGGAGAACTGTTGTTTTTGGAGACATTGGATCTACCTCATGGTATTGGTACAAAGGAACTGCCCAAAAGTATAGTTAAACTGTGGCGGTTGAAATTTTTATGTGTTGGTTATCCTTGGAGACTTGCCTGCCTTGCTTTCTCTTATGTTAAGGTTGTACGCACATGACACCACTGAAAGGTTTAGCATAAACAGAAATAAGTTCAGATGTCTGAAGTGTCTAGACTTGTATTTTTCTGCCACTGATATGATGTTCCACGCTGGAGCCATGCTAAAGCTTGAATACATCTCGTTTAGAATCAAGCCACATTCCACAGAGTATGCATGTGCCAATCGAAATCTGGGCATCCACCACCTCTCAACCCTTAAGGAACTCAGTGTTTATATATTCACTGCCAAGGCGCGAGGGTTGAGGAGGTAGAGGCAGTTGAGGCCGCCATCAAGAACGAAGCAAGCCTACTTCCCAACTGCTCCTCACAACATATGGTCAGATTGGCTGGGAAAATGATGGTGACAGAAGGACATGAGGAACGGGGCTACTCCATGGAGCAACAAGAAGAGATCACCAGTCCCCCCATACCGAGCACAAAATAACCCCTGCTATTTAGTTCATCATCTGCAATTTCATCTATTCAAGGTATATAACTATAGTACTTGATAATAATCAATGGCTTCCCAGAGGCTCATCGAATCATATGTTATCTTATTAACTAGGTACGTATACTTCTGGTTCCTTGGTAGAAGCAAATATTTTGTTCCTTTAATTGATTTGTGATGTATCAATGGGCCGGCTGGTTCCTTGGGTGGCCACTAGCCCACTGTCACTACCAAATTCGAGGGCTAGCCTGTATGCCGAAAACCATCAGGAAAATAGATTTTACCTTCTATGGGTGGACCGTCAGGTTTTACCGTCTAGTAGTGTACAGTACTGGGGGATACAAACTTGATGTTTCATTGTGTGCTGCCTTGGCTTTTAATTTGTTTGTTCTGTAACTGAGCAATAGTTGGAGCTTGAAAATGTGCCCATGTTTGGTATCTTTGTGTAAAAGTCTCCCGCCGTTTGATATGATATATAAACTAGATATAATTT
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| CDS seq | AACAGCTGTCTTTCGAGAGTGTACACAAAGAATCGACGGCAGGGCAACGGCTGCTTCCTGCAGCAGGTAAACAGGCACAACCGGACAGTGCACGTAGGAGAACTGTTGTTTTTGGAGACATTGGATCTACCTCATGGTATTGGTACAAAGGAACTGCCCAAAAGTATAGTTAAACTGTGGCGGTTGAAATTTTTATGTGTTGGTTATCCTTGGAGACTTGCCTGCCTTGCTTTCTCTTATGTTAAGGTTGTACGCACATGA |
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| Protein seq | NSCLSRVYTKNRRQGNGCFLQQVNRHNRTVHVGELLFLETLDLPHGIGTKELPKSIVKLWRLKFLCVGYPWRLACLAFSYVKVVRT |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0630300 | OsNip_11t0630300-01 | Chr11 | 24716906 | 24719902 | + | RAP2018-11-26 | ||
| CDS seq | AACAGCTGTCTTTCGAGAGTGTACACAAAGAATCGACGGCAGGGCAACGGCTGCTTCCTGCAGCAGGTAAACAGGCACAACCGGACAGTGCACGTAGGAGAACTGTTGTTTTTGGAGACATTGGATCTACCTCATGGTATTGGTACAAAGGAACTGCCCAAAAGTATAGTTAAACTGTGGCGGTTGAAATTTTTATGTGTTGGTTATCCTTGGAGACTTGCCTGCCTTGCTTTCTCTTATGTTAAGGTTGTACGCACATGA
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| Protein seq | NSCLSRVYTKNRRQGNGCFLQQVNRHNRTVHVGELLFLETLDLPHGIGTKELPKSIVKLWRLKFLCVGYPWRLACLAFSYVKVVRT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.083542 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g41210 | RBH | 0.0 | 0.039327 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0630300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0021020 | RBH | 0.000000 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0020970 | SBH | 0.220915 | 0.0 | 1.038830 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0020870 | SBH | 1.464261 | 0.0 | 2.332923 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0020340 | SBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0020880 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0369700 | SBH | 0.61914 | 0.765928 | 0.191343 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0021360 | SBH | 0.244854 | 0.0 | 0.077929 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0391200 | SBH | 3.1528795 | 4.3264245 | 2.1577035 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0021150 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0021280 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0020990 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0020600 | SBH | 0.220188 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0020730 | SBH | 0.138590 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G020690 | SBH | 0.108991 | 0.0 | 0.851341 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0021140 | RBH | 0.0 | 0.0 | 0.790095 |
