Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0629582 | OGI:11070600 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:24667206-24667700 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCCTCACTGGCCGACCTCACGTACCTAGATATCGAGGTTAAAGTCAGACAAGAAACCCTCCAGATCCTTGGGAATTTTCCAGCTTTGCAGTTTCTGGAATTATACTCAAATGCAGCAGACTACGGTGATAGGTGGCTCACTGTCAGCAACTGTGGATTTCGGTGCCTGCAGAAGTTCAAATTTGTCCACTGGATGAATCTTGTGTTTGAGGAAGGAGCCATGCCAATGCTTGAGACTCTTGAATTCCAAATAATAGCACATGAGGCACGGACTGAATGTGGATTTGGTCCTCCTGATCTCGGTATCTGCCACCTCTCTTCCATCAGGAACCTCATCATCAATATATACTGCGAGTGTGCAAGAATTGAAGATGTGGAGGCATTAGAGGCTGCTATCTGGCTTGCAGCCAGTACTCTTCCTAACCATCCTACACTAACTTTACACAGATTTCGTGAAGCAGAGATGGTAAAGAATAACCAGGGTAACCTGTAG
More
|
||||||||||
| CDS seq | ATGGCCTCACTGGCCGACCTCACGTACCTAGATATCGAGGTTAAAGTCAGACAAGAAACCCTCCAGATCCTTGGGAATTTTCCAGCTTTGCAGTTTCTGGAATTATACTCAAATGCAGCAGACTACGGTGATAGGTGGCTCACTGTCAGCAACTGTGGATTTCGGTGCCTGCAGAAGTTCAAATTTGTCCACTGGATGAATCTTGTGTTTGAGGAAGGAGCCATGCCAATGCTTGAGACTCTTGAATTCCAAATAATAGCACATGAGGCACGGACTGAATGTGGATTTGGTCCTCCTGATCTCGGTATCTGCCACCTCTCTTCCATCAGGAACCTCATCATCAATATATACTGCGAGTGTGCAAGAATTGAAGATGTGGAGGCATTAGAGGCTGCTATCTGGCTTGCAGCCAGTACTCTTCCTAACCATCCTACACTAACTTTACACAGATTTCGTGAAGCAGAGATGGTAAAGAATAACCAGGGTAACCTGTAG
More
|
||||||||||
| Protein seq | MASLADLTYLDIEVKVRQETLQILGNFPALQFLELYSNAADYGDRWLTVSNCGFRCLQKFKFVHWMNLVFEEGAMPMLETLEFQIIAHEARTECGFGPPDLGICHLSSIRNLIINIYCECARIEDVEALEAAIWLAASTLPNHPTLTLHRFREAEMVKNNQGNL |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0629582 | OsNip_11t0629582-00 | Chr11 | 24667206 | 24667700 | + | RAP2018-11-26 | ||
| CDS seq | ATGGCCTCACTGGCCGACCTCACGTACCTAGATATCGAGGTTAAAGTCAGACAAGAAACCCTCCAGATCCTTGGGAATTTTCCAGCTTTGCAGTTTCTGGAATTATACTCAAATGCAGCAGACTACGGTGATAGGTGGCTCACTGTCAGCAACTGTGGATTTCGGTGCCTGCAGAAGTTCAAATTTGTCCACTGGATGAATCTTGTGTTTGAGGAAGGAGCCATGCCAATGCTTGAGACTCTTGAATTCCAAATAATAGCACATGAGGCACGGACTGAATGTGGATTTGGTCCTCCTGATCTCGGTATCTGCCACCTCTCTTCCATCAGGAACCTCATCATCAATATATACTGCGAGTGTGCAAGAATTGAAGATGTGGAGGCATTAGAGGCTGCTATCTGGCTTGCAGCCAGTACTCTTCCTAACCATCCTACACTAACTTTACACAGATTTCGTGAAGCAGAGATGGTAAAGAATAACCAGGGTAACCTGTAG
More
|
|||||||
| Protein seq | MASLADLTYLDIEVKVRQETLQILGNFPALQFLELYSNAADYGDRWLTVSNCGFRCLQKFKFVHWMNLVFEEGAMPMLETLEFQIIAHEARTECGFGPPDLGICHLSSIRNLIINIYCECARIEDVEALEAAIWLAASTLPNHPTLTLHRFREAEMVKNNQGNL |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.115709 | 0.240266 | 1.741020 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0629600 | RBH | 1.379275 | 1.106049 | 2.761263 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g41170 | SBH | 0.472281 | 0.314193 | 0.331847 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0629582 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0021000 | SBH | 1.741207 | 9.585806 | 5.484225 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0020940 | RBH | 0.176175 | 1.333546 | 0.831559 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0020830 | SBH | 1.956025 | 5.682477 | 7.191903 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0020310 | SBH | 0.175079 | 0.119951 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0020850 | SBH | 3.785178 | 10.239047 | 10.625635 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0369200 | SBH | 2.319298 | 10.690505 | 11.835416 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0021330 | SBH | 0.082968 | 0.249660 | 0.780225 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0390800 | SBH | 2.8261035 | 18.0054275 | 11.389792 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0021120 | SBH | 0.120571 | 0.085797 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0021250 | SBH | 0.278203 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0020950 | SBH | 2.587568 | 7.732235 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0020570 | SBH | 0.406152 | 0.0 | 0.576532 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0020700 | SBH | 0.170589 | 3.502458 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G020650 | SBH | 0.450172 | 2.624156 | 2.293994 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0021100 | SBH | 0.892220 | 16.758698 | 4.628226 |
