Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0621200 | OGI:11069610 | 1/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:24218226-24218772 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AAATCACATCATTCTTCGTTGCAAATTAGCAGGGGAAGTCTGGAAGAAGCTCAACCTATATGAGACAGCCGTGCGCAGCTCTAACATACAAGATTTTGTGGAATCAATCCTGGACACCTTGCCAGAACACCAGAAACCGGGATGGCCTGCATGCTTTGCTGCTTGTTCGCACGGTCTCTGGAAAGCACGCAACCAGCTGATCTTCAAGCTCACGGAAACAAGCGTTGCATACATCCTGCATCGAATCAGAGAAAGTCTCCAATTATGGGTTCATCGCTTAAAGCCTAGCCTTCGCGAACACCTCAACACTTGGGCAGACAAGCTTAGCTAGGTTTCCTTTTTATTCCTGTATTTTTATTTTTATTTTTATTCCTGTGTTTTGTTCTTTCTTCTTCCTTTTCTTCTCCTTTCCTTCTTTTTTTATCTTTCTTTCTCTTTATCCTTCCTCTCTGTTCCCCCCCCTGTATAATCTCTTGCCAGCCACTGGCTTTGTCACTTTTATGACCACCATTAATACAATGGAAACAAGGTAGAGTCTCTCTACCTT
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| CDS seq | AATCACATCATTCTTCGTTGCAAATTAGCAGGGGAAGTCTGGAAGAAGCTCAACCTATATGAGACAGCCGTGCGCAGCTCTAACATACAAGATTTTGTGGAATCAATCCTGGACACCTTGCCAGAACACCAGAAACCGGGATGGCCTGCATGCTTTGCTGCTTGTTCGCACGGTCTCTGGAAAGCACGCAACCAGCTGATCTTCAAGCTCACGGAAACAAGCGTTGCATACATCCTGCATCGAATCAGAGAAAGTCTCCAATTATGGGTTCATCGCTTAAAGCCTAGCCTTCGCGAACACCTCAACACTTGGGCAGACAAGCTTAGCTAG |
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| Protein seq | NHIILRCKLAGEVWKKLNLYETAVRSSNIQDFVESILDTLPEHQKPGWPACFAACSHGLWKARNQLIFKLTETSVAYILHRIRESLQLWVHRLKPSLREHLNTWADKLS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0621200 | OsNip_11t0621200-00 | Chr11 | 24218226 | 24218772 | + | RAP2018-11-26 | ||
| CDS seq | AATCACATCATTCTTCGTTGCAAATTAGCAGGGGAAGTCTGGAAGAAGCTCAACCTATATGAGACAGCCGTGCGCAGCTCTAACATACAAGATTTTGTGGAATCAATCCTGGACACCTTGCCAGAACACCAGAAACCGGGATGGCCTGCATGCTTTGCTGCTTGTTCGCACGGTCTCTGGAAAGCACGCAACCAGCTGATCTTCAAGCTCACGGAAACAAGCGTTGCATACATCCTGCATCGAATCAGAGAAAGTCTCCAATTATGGGTTCATCGCTTAAAGCCTAGCCTTCGCGAACACCTCAACACTTGGGCAGACAAGCTTAGCTAG
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| Protein seq | NHIILRCKLAGEVWKKLNLYETAVRSSNIQDFVESILDTLPEHQKPGWPACFAACSHGLWKARNQLIFKLTETSVAYILHRIRESLQLWVHRLKPSLREHLNTWADKLS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0784000 | RBH | 0.977214 | 0.0 | 1.621238 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g08610 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0621200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0016940 | SBH | 2.187675 | 1.089475 | 5.508959 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0075100 | SBH | 0.009081 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0017430 | SBH | 0.235359 | 0.091657 | 0.567855 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0077900 | SBH | 0.010658 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0017300 | SBH | 0.148575 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G019630 | SBH | 0.0 | 0.0 | 0.086274 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
