Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0618800 | OGI:11069240 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:24096264-24097002 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCAGGACATGCCAGAAGCAGGACTGCTCTGGTTAACCAGTCCAGGAGTGTCGTTCCCAGACTTTGCACCCTTCTTCTCCTGCCATAATTCGCTTTTCTCGATGCCACAATGACAAAACAAAGCCCAAATGAGGGTTATGAACTCAGTATCAGACTTGAGATCCTTGGCGTGAGCTTCTACATTGGAACTGGGAGCAATGTGCACAATCAAGTGACCCCACACCTCAGCTAGGATCTCCCAGAGACATGCTTGGCCCTCCTTCTTGATGAGTGCATTCGCCAGTAAAGCGCCTTGTTACAATATGTTTCCACTCAGATTTACATCATCATCATGTGTGCCTGGAACAAGAGCTTTCTGCTCCTCTTTCATAAGCTTCTTGTTCGCAATATGAGTGACAATCTTTAAGCATTTCCTGAGCACACTGAACAGCATCTTGGCAGGTCTTCTTAGACATCAAAATGGTTTCAGGGAGCAGTTTGGGCTTTGCAATAAGCAGGTACATACAATACTCTGACAAGAAATTGGCCACATCATGTGCCTTCTGAAACTTGCTGGTTAAGTTGATCCTACGATCATTGGCAAGATTGATCGCACAGAGGCTTGTTGCGATGTGCCAGACCAGAATAACACGGGAGCATCTTGGTAACTCTTCAAGGCATGCCAACCAATAACTCTCTGCTCTGTCACTGACACGTGGCGATGGGAGGTCTCTTGACAGAGGATGGCCCTCAAGGTCCAT
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| CDS seq | ATGGACCTTGAGGGCCATCCTCTGTCAAGAGACCTCCCATCGCCACGTGTCAGTGACAGAGCAGAGAGTTATTGGTTGGCATGCCTTGAAGAGTTACCAAGATGCTCCCGTGTTATTCTGGTCTGGCACATCGCAACAAGCCTCTGTGCGATCAATCTTGCCAATGATCGTAGGATCAACTTAACCAGCAAGTTTCAGAAGGCACATGATGTGGCCAATTTCTTGTCAGAGTATTGCGCTTTACTGGCGAATGCACTCATCAAGAAGGAGGGCCAAGCATGTCTCTGGGAGATCCTAGCTGAGGTGTGGGGTCACTTGATTGTGCACATTGCTCCCAGTTCCAATGTAGAAGCTCACGCCAAGGATCTCAAGTCTGATACTGAGTTCATAACCCTCATTTGGGCTTTGTTTTGTCATTGTGGCATCGAGAAAAGCGAATTATGGCAGGAGAAGAAGGGTGCAAAGTCTGGGAACGACACTCCTGGACTGGTTAACCAGAGCAGTCCTGCTTCTGGCATGTCCTGA
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| Protein seq | MDLEGHPLSRDLPSPRVSDRAESYWLACLEELPRCSRVILVWHIATSLCAINLANDRRINLTSKFQKAHDVANFLSEYCALLANALIKKEGQACLWEILAEVWGHLIVHIAPSSNVEAHAKDLKSDTEFITLIWALFCHCGIEKSELWQEKKGAKSGNDTPGLVNQSSPASGMS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0618800 | OsNip_11t0618800-00 | Chr11 | 24096264 | 24097002 | - | RAP2018-11-26 | ||
| CDS seq | ATGGACCTTGAGGGCCATCCTCTGTCAAGAGACCTCCCATCGCCACGTGTCAGTGACAGAGCAGAGAGTTATTGGTTGGCATGCCTTGAAGAGTTACCAAGATGCTCCCGTGTTATTCTGGTCTGGCACATCGCAACAAGCCTCTGTGCGATCAATCTTGCCAATGATCGTAGGATCAACTTAACCAGCAAGTTTCAGAAGGCACATGATGTGGCCAATTTCTTGTCAGAGTATTGCGCTTTACTGGCGAATGCACTCATCAAGAAGGAGGGCCAAGCATGTCTCTGGGAGATCCTAGCTGAGGTGTGGGGTCACTTGATTGTGCACATTGCTCCCAGTTCCAATGTAGAAGCTCACGCCAAGGATCTCAAGTCTGATACTGAGTTCATAACCCTCATTTGGGCTTTGTTTTGTCATTGTGGCATCGAGAAAAGCGAATTATGGCAGGAGAAGAAGGGTGCAAAGTCTGGGAACGACACTCCTGGACTGGTTAACCAGAGCAGTCCTGCTTCTGGCATGTCCTGA
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| Protein seq | MDLEGHPLSRDLPSPRVSDRAESYWLACLEELPRCSRVILVWHIATSLCAINLANDRRINLTSKFQKAHDVANFLSEYCALLANALIKKEGQACLWEILAEVWGHLIVHIAPSSNVEAHAKDLKSDTEFITLIWALFCHCGIEKSELWQEKKGAKSGNDTPGLVNQSSPASGMS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.377133 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0618500 | RBH | 0.208884 | 0.154744 | 0.557189 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g40420 | RBH | 0.106671 | 0.120156 | 0.051895 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0618800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0020510 | SBH | 0.117352 | 2.024015 | 2.899983 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0020580 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0020370 | RBH | 0.0 | 0.0 | 0.164518 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0019920 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0020430 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0362200 | SBH | 0.0942275 | 3.8585355 | 0.212157 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0020920 | RBH | 0.0 | 0.0 | 0.036075 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0380600 | RBH | 0.0717435 | 0.006044 | 0.3047235 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0020720 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0020870 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0020550 | RBH | 0.0 | 2.236707 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0020170 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0020280 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G020260 | RBH | 0.0 | 0.305969 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0020630 | SBH | 0.0 | 1.153741 | 0.164063 |
