Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0604500 | OGI:11067640 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:23283945-23284798 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AACTTAATAATAACAGACTTACTACTATTAAAGTAATTCATTCATAGCATAAGCCACATGGTCTTCCTTATAAGGGTCGGTCAAATCACACAAGACATTACTACCTAGCAAACACCATAGATAACTGATACTACTACCCGACAGAGAGCTAGTAATTTAGTAGCTAAGGGTGAGGCAGTACTCAAAAGCTAAGCTGGCTTGAGACCATTTGGGTAAGATACAGTAAAGAAGTAGTCCTCTGCAGCATCTCAGTTAGCGGGCGAGCCTGAAATCACAGTGGTTGACAGCAAGTGGGGTCGTCGTAGTCCCAGTCGCCGAATTTGACGCCGGTCCAGTCGATCTCGGCCCATTCTTTCTCCATACGAGCCTGCATCTCCGCCTGCTCCGTGAAGTAGCTCTGGTGGACCATGTAGCGGCCAGTCTCCTTCACCTCGCGGAGGATCTCCTTCTGGAACTCCTCGAACTCGTCGTTGACCTCCTCCCATGAATCGAAGAACGCCAGGCGCTCGTCGCGCTCTTCCGGCGAGAGACGCGCCAGGTCCTCGGGCATCGGCCTCGGCTCCCTCTTCAGTGAGAGGATGGCGGCGATGGTGTTCAGAGGCATCTGCACCATGACAGGAGGCTTCTCCTCCTCGCCGCCGTCTCCACCTGCAGTGGAGGCCGTCGCCGCCGCCGCCGCGTCGAGACGCTTCCCCTCCCCGGTGACGGATCCCGCATCTGCAGCGATCGCCTTCACTTCCTCCTCATCGGAAACCTCCACCGTCGTCGCCGCCTTCGGCTCCGGTCCAGGAGTTTCCATGACCAGCGGAGCGGGAAGAAGAGGCGGCCGCCGATGAGAGGGAGGTGGCGAGAGC
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| CDS seq | ATGGAAACTCCTGGACCGGAGCCGAAGGCGGCGACGACGGTGGAGGTTTCCGATGAGGAGGAAGTGAAGGCGATCGCTGCAGATGCGGGATCCGTCACCGGGGAGGGGAAGCGTCTCGACGCGGCGGCGGCGGCGACGGCCTCCACTGCAGGTGGAGACGGCGGCGAGGAGGAGAAGCCTCCTGTCATGGTGCAGATGCCTCTGAACACCATCGCCGCCATCCTCTCACTGAAGAGGGAGCCGAGGCCGATGCCCGAGGACCTGGCGCGTCTCTCGCCGGAAGAGCGCGACGAGCGCCTGGCGTTCTTCGATTCATGGGAGGAGGTCAACGACGAGTTCGAGGAGTTCCAGAAGGAGATCCTCCGCGAGGTGAAGGAGACTGGCCGCTACATGGTCCACCAGAGCTACTTCACGGAGCAGGCGGAGATGCAGGCTCGTATGGAGAAAGAATGGGCCGAGATCGACTGGACCGGCGTCAAATTCGGCGACTGGGACTACGACGACCCCACTTGCTGTCAACCACTGTGA
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| Protein seq | METPGPEPKAATTVEVSDEEEVKAIAADAGSVTGEGKRLDAAAAATASTAGGDGGEEEKPPVMVQMPLNTIAAILSLKREPRPMPEDLARLSPEERDERLAFFDSWEEVNDEFEEFQKEILREVKETGRYMVHQSYFTEQAEMQARMEKEWAEIDWTGVKFGDWDYDDPTCCQPL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0604500 | OsNip_11t0604500-01 | Chr11 | 23283945 | 23284798 | - | RAP2018-11-26 | ||
| CDS seq | ATGGAAACTCCTGGACCGGAGCCGAAGGCGGCGACGACGGTGGAGGTTTCCGATGAGGAGGAAGTGAAGGCGATCGCTGCAGATGCGGGATCCGTCACCGGGGAGGGGAAGCGTCTCGACGCGGCGGCGGCGGCGACGGCCTCCACTGCAGGTGGAGACGGCGGCGAGGAGGAGAAGCCTCCTGTCATGGTGCAGATGCCTCTGAACACCATCGCCGCCATCCTCTCACTGAAGAGGGAGCCGAGGCCGATGCCCGAGGACCTGGCGCGTCTCTCGCCGGAAGAGCGCGACGAGCGCCTGGCGTTCTTCGATTCATGGGAGGAGGTCAACGACGAGTTCGAGGAGTTCCAGAAGGAGATCCTCCGCGAGGTGAAGGAGACTGGCCGCTACATGGTCCACCAGAGCTACTTCACGGAGCAGGCGGAGATGCAGGCTCGTATGGAGAAAGAATGGGCCGAGATCGACTGGACCGGCGTCAAATTCGGCGACTGGGACTACGACGACCCCACTTGCTGTCAACCACTGTGA
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| Protein seq | METPGPEPKAATTVEVSDEEEVKAIAADAGSVTGEGKRLDAAAAATASTAGGDGGEEEKPPVMVQMPLNTIAAILSLKREPRPMPEDLARLSPEERDERLAFFDSWEEVNDEFEEFQKEILREVKETGRYMVHQSYFTEQAEMQARMEKEWAEIDWTGVKFGDWDYDDPTCCQPL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g39120 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0604500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0019660 | RBH | 0.0 | 0.0 | 0.793751 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0019880 | RBH | 0.0 | 0.0 | 0.257300 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0019640 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0019220 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0019730 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0355800 | RBH | 0 | 0.207296 | 0.2001935 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0020190 | RBH | 0.0 | 0.000000 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0370900 | RBH | 0.020105 | 0.6656545 | 0.1037895 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0019990 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0020200 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0019650 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0019390 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0019490 | RBH | 0.0 | 1.533926 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G019540 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0019920 | RBH | 0.0 | 0.0 | 0.0 |
