Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0591000 | OGI:11065320 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:22454589-22458547 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTCTTCTGACCTTGTGCAGGATCCAGAGCATACATATCTCTTTTGCTATCGATTTCAGTGAGACCCCTGTGATGACTGGCTGGGAAGGCTGGGAGCCCTCGCGACAGCTCCGCCTGCTGCACATCACTGGCGTCCGGCTGCCTCGGCTGCCAGTGTGGGTGAACTCCATGCGCATCCCACACCTCTCCATATTGGACCTTAGAGTGGTGACCATGGAACCTCGGGACCTAGACGTCCTTGCGAGGATGCCGGAGCTCTGCTCCCTCCGTCTGGACATCACGAGGAGGTTTCCATGGACGGTCGTCGCCGGTGACGGATTGTTCCCAAACCTGAGATACTGCCGCATGGACATAGCGCTCACGTTTTTGCAGGGAGCAATGCCGATGCTCGTCAAAGTTGAACTGTACGTGTGGGTGGCCAGAGATGATGCTGCCAATGATGTTGGATTGGGGAACCTCCCTCTGCTCAATACCATCCATATTTGGCTGCAATGTGGGGGTGCGACGGCCAAGCAGGTGGAGGAAGCGGAAGCAGCATGGAGGCGCGTCGCCCATGCTCACCCCAATCATCCTGCCATTCATGTGAACCGATTGGGAGAGGTACAATTGATTTCGCTAGTAATGATTAATTGATTGATTGATTAGTTAACTCTTCTAGCTACATGATTTCTCAGTTCTGATTCCTCCCCAAGACCCATAACTAGTCAGCTTCTTTAATACATTATCTAAAAAAATCAGCTTCTTTCTCAGTTAGCCCTTTTTTTATATCGCCCAATTAGTATCATCAGTCTCTCAAATTCAATTTCAGTTACTGATGAAAAAAGACAAAGATGATGGTGATGATGAAGAGGAGATTTCAGGAACACACAAAGTTGACAGAAATGATGATGAGCAGGATATTTCAACTGGGGATCAAGAGGTATACAGCTATTGGTTTACCCACAGCATGCAAATATAATCTCATCCTTGCTGCATAACAAACTTATACTTATTTTAGACAATGGATAAATTAATTCCAATCTTTGCTTCAAAGAAGCTACAATCACTTATTACAAACTTTCTTCAACTGGGTATGTAAAGTATTACAAAGGATAGGTAAAGACAAACTAAAAACACACCAACAAAAGAGAGATAAATTCTAAGTAAGACGTAGTCCTATTAGAAAATCTTCATCCAAAGTTGGGAAAATCTGCATTACCGTAGATTTTGCAAGTAGGTTGCCTTGTAATGTTCCTTGTCTTCTTCACAGCTGGGATCAAAAGCAAAGCCAATAGGTTACCCTGAAAAGTACATGTATATAAGATTGAATTGAAGCTTTGTCAAAACCATATCATTACTACTAAGCCATACAGTCCAATATAGTGCAGCAGATGCTCCCGCTAACATATGTTTTATTGGTTTTTATAATCGATACCAGCAAGTCAATTTCCAGACATATGGGAGAAATTCTCTGATTTAAAACAATTCTCAAAAGAAATTTAGAGAAGTGGCAATCAAAGAAACAATGTTGAATAGTTTCACACTACTACAAAAAGACAAATAGGTGTCGTCACTATAGGTGCCGGAACAGCTAAAACCGGCACTTATAATGTCTTTCCCGCCCATGCACCCGCCTCCATGCACCTATGATCATCATGCAAACAGAAGCAACACTTCCTACTAGCATTCCAATTCCGTCGTGCTAAATTATCTTTGGCCAGTGTTACCCTTTTAATAAACACCACGTAAAAATATTTATTTTAAGGGGCACCATCAGTCTCTATGGGACCTTGCTTCTCTCTATATGACCATTGCTAATCAAAGCTAGGCACATTGAACGAACTGAAAAAGGAGCATTCTGATGTCAAATTCATCTTAAAGATATATTTGTCTTCATTCAATTGTACATGTACTGTTTTTGCAACTAAAGCATGCCAAAGAGCCAGATTCCAGCCTACTAATAATGCTCTGCGAAACAAAAATTAAGAGAAACAAAACCCAAGATTGTTACCACTGTTGCATTATTCGTACAAACAATGTTACAGTTGGATGGATATTGTTCCCTAAAAGAAAAGTTATAACTCTATCTATCTCCCCAAAATCTAACATATTTCCCATCATTAACCATAAAATTACCCGAGCTTAAAAACCTATCTTTTACTTTCATATGTCCCGGTCAGAAGTGAGAGCCTCCTGGTTTTCTCAGTCTAGGTGATAGTTTGATTCTTTAAATATTTTCTTCCTTATAAATTATGCAAAATGCCATCCTTGTTAATCCTTGAAAAGCCATTTGCGTAGAAGACATAGTTCTGCACATCCAAATTATGCATTCCAAGCCATCGTGTTTCTTTGGTTGACAAATTATATTTCATCTAGTCAATATGTTTTTCTTATTGCGACTATCACATTGTAAAAAAAATTATGAATCTATAGTGATCATATTTTTTTCAAGAATTACTCTAGGAATCTCGAAAAACAAGATCATAAACATAGCTAAACTGGTTAACATAGATTTAATTAGAGCCAGTCTTCCTCCAACCGAGATTATCTTTCCAATTAGTAAGTTATTTTCTCTATCCTCTTCTCAATTGATTTCCAATCCTTATTACTTAGCGTCGAAATACCAAGCTACCTAAAAGAAAAATATCCTAATTAACATCAGAATAACCAGAATATATATATCCTTGTGTTCTTTAGTCTGGCCCATAAAAATGAGTTCACTCTTACAAAAATTTATTTTGAACCAAAAAGCTTCTAAAAAACAGTAAATAACAACCTCATGTTTTTGGCTTTATTCAAATTGTAATCAATAAATATTATTGTATCATCAACATATTGCAAAGTTGATAGATGAGAAACTGCATCCACTATTTGCCGATCTTCTTTAGCATGCTTAATTAGGATAGCTAACATATCAACTACTACTCCCTCCGTCCTAAAATATAGCAACCCAGTACTATTCTATGAATCGGAAGGTAGTATGTTTCTAATCTTATACTAGGTTGTTATATTTTGTGACGGATGAAGCATATATGTTAAAAAGAATTTGAGATGAAGTATTGCCTTGTCTCAAGATTCTTCTCTCTTTTTTTTGAAAATTAGTGCCAATCTAGTCATTAACTTTGATACCTATATGTCTCCCTTGATCATCCATTGGCACCATTTAAGAGAAAGGCCTTCCATTCTGAGGTTTGTGTATAAATAACCATTTGACCTTATCATATGCCTTTTCAAAGTCAATCTTGAAAAATACTCTGTCATGTTTCTTTTTATATAACTCATGAATAGTTTATTGTAAAATCACTATTGGTTCCATTGGAAGGTATGAAACCTGTTTGGGTAGGACTAATTTTTTTTAGCTACCCCAACAATCCAATTAATCGCAACCTTGGTAAAAATATTAAAACTCACCATATAATAAACAGATCAGCTTATATTGCTCAATCTTAAAAGCCTCTTTACATTTAGACAATAAAATAATTGTACCGAAATTTAAAGAGTACATAGGAAATAACCAAAGTTAAATATTATAATTAATTTACTTAACTACTGGTTTCTCTCGCAGTTCCAATCTGACAATGGTAGAGCCAAAGAGGAAGAGGAGGCTGCACAGCAATCTTGAACGCGCATGCATGCACTCCTCCTTTCATGCAATCTTCTCTTAATTTGTGAGACATTCCTATCGTCTTCGAAACATTCTTCAAATTTAATATCGCTATACGCAAACTTCTCTTAATTTCCGACTGTAATGAAACAAGTTTCTTTGGTGGTAACCTAATATTTTGGTTGTGTACTGTATGAAGACGAAGAAGATCCACCTCTCCTCTGGTAGACTTGAGCGCCAACAGCACCAGCTGTTCGCCTGTTCGACAACATTGGCTAGTTTTTCATAATATTTTCTTTTGTCATGTCTGGAGGATTTGTATGGTGTGTTTGCAAATGGATTGTACTATGTGCTTCGATGAGACAAAAATGTTGAGC
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| CDS seq | CTTCTGACCTTGTGCAGGATCCAGAGCATACATATCTCTTTTGCTATCGATTTCAGTGAGACCCCTGTGATGACTGGCTGGGAAGGCTGGGAGCCCTCGCGACAGCTCCGCCTGCTGCACATCACTGGCGTCCGGCTGCCTCGGCTGCCAGTGTGGGTGAACTCCATGCGCATCCCACACCTCTCCATATTGGACCTTAGAGTGGTGACCATGGAACCTCGGGACCTAGACGTCCTTGCGAGGATGCCGGAGCTCTGCTCCCTCCGTCTGGACATCACGAGGAGGTTTCCATGGACGGTCGTCGCCGGTGACGGATTGTTCCCAAACCTGAGATACTGCCGCATGGACATAGCGCTCACGTTTTTGCAGGGAGCAATGCCGATGCTCGTCAAAGTTGAACTGTACGTGTGGGTGGCCAGAGATGATGCTGCCAATGATGTTGGATTGGGGAACCTCCCTCTGCTCAATACCATCCATATTTGGCTGCAATGTGGGGGTGCGACGGCCAAGCAGGTGGAGGAAGCGGAAGCAGCATGGAGGCGCGTCGCCCATGCTCACCCCAATCATCCTGCCATTCATGTGAACCGATTGGGAGAGTTACTGATGAAAAAAGACAAAGATGATGGTGATGATGAAGAGGAGATTTCAGGAACACACAAAGTTGACAGAAATGATGATGAGCAGGATATTTCAACTGGGGATCAAGAGTTCCAATCTGACAATGGTAGAGCCAAAGAGGAAGAGGAGGCTGCACAGCAATCTTGA
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| Protein seq | LLTLCRIQSIHISFAIDFSETPVMTGWEGWEPSRQLRLLHITGVRLPRLPVWVNSMRIPHLSILDLRVVTMEPRDLDVLARMPELCSLRLDITRRFPWTVVAGDGLFPNLRYCRMDIALTFLQGAMPMLVKVELYVWVARDDAANDVGLGNLPLLNTIHIWLQCGGATAKQVEEAEAAWRRVAHAHPNHPAIHVNRLGELLMKKDKDDGDDEEEISGTHKVDRNDDEQDISTGDQEFQSDNGRAKEEEEAAQQS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0591000 | OsNip_11t0591000-01 | Chr11 | 22454589 | 22458547 | + | RAP2018-11-26 | ||
| CDS seq | CTTCTGACCTTGTGCAGGATCCAGAGCATACATATCTCTTTTGCTATCGATTTCAGTGAGACCCCTGTGATGACTGGCTGGGAAGGCTGGGAGCCCTCGCGACAGCTCCGCCTGCTGCACATCACTGGCGTCCGGCTGCCTCGGCTGCCAGTGTGGGTGAACTCCATGCGCATCCCACACCTCTCCATATTGGACCTTAGAGTGGTGACCATGGAACCTCGGGACCTAGACGTCCTTGCGAGGATGCCGGAGCTCTGCTCCCTCCGTCTGGACATCACGAGGAGGTTTCCATGGACGGTCGTCGCCGGTGACGGATTGTTCCCAAACCTGAGATACTGCCGCATGGACATAGCGCTCACGTTTTTGCAGGGAGCAATGCCGATGCTCGTCAAAGTTGAACTGTACGTGTGGGTGGCCAGAGATGATGCTGCCAATGATGTTGGATTGGGGAACCTCCCTCTGCTCAATACCATCCATATTTGGCTGCAATGTGGGGGTGCGACGGCCAAGCAGGTGGAGGAAGCGGAAGCAGCATGGAGGCGCGTCGCCCATGCTCACCCCAATCATCCTGCCATTCATGTGAACCGATTGGGAGAGTTACTGATGAAAAAAGACAAAGATGATGGTGATGATGAAGAGGAGATTTCAGGAACACACAAAGTTGACAGAAATGATGATGAGCAGGATATTTCAACTGGGGATCAAGAGTTCCAATCTGACAATGGTAGAGCCAAAGAGGAAGAGGAGGCTGCACAGCAATCTTGA
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| Protein seq | LLTLCRIQSIHISFAIDFSETPVMTGWEGWEPSRQLRLLHITGVRLPRLPVWVNSMRIPHLSILDLRVVTMEPRDLDVLARMPELCSLRLDITRRFPWTVVAGDGLFPNLRYCRMDIALTFLQGAMPMLVKVELYVWVARDDAANDVGLGNLPLLNTIHIWLQCGGATAKQVEEAEAAWRRVAHAHPNHPAIHVNRLGELLMKKDKDDGDDEEEISGTHKVDRNDDEQDISTGDQEFQSDNGRAKEEEEAAQQS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g37880 | RBH | 0.000000 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0591000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0018860 | RBH | 0.033359 | 2.025336 | 0.335204 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0018960 | RBH | 0.0 | 1.094639 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0018750 | RBH | 0.0 | 8.215183 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0018500 | RBH | 0.0 | 0.064210 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0018790 | RBH | 0.978046 | 3.226187 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0345000 | RBH | 0.2282045 | 4.6339025 | 0.2718185 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0019360 | RBH | 0.0 | 0.000000 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0358000 | RBH | 0.4338155 | 4.4828455 | 0.036291 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0019150 | RBH | 0.0 | 0.037771 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0019300 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0018760 | SBH | 0.556514 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0018470 | SBH | 0.619366 | 0.0 | 0.136617 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0018640 | RBH | 0.0 | 0.736853 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G018800 | SBH | 0.006649 | 0.000000 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0019020 | RBH | 0.0 | 0.908115 | 0.320162 |
