Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0575200 | OGI:11063410 | 1/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:21654096-21657770 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TGTGCGGATTTGTTATTTCCGTCTCAAGTTGCTAGGACCCAGGAGGCGCAAACTGGCACAGCAGAATCAGTGCTCACTGAAGATGGGCCTGATGTCCCTTTATCTGACAGTATTGTTTTACGGAAGCTTCTTTTAAGTACTAAGTGAATTTCCTTGTATATGCACATGTGGCACAAGACAATACTCCCTCTATCCCAAAACAGAAGACATAACCACTCATAATACAAAGACCAAGAAAACATTTATTCACTTTCTTGATTGGATCACCTTAATGCATGCAAGCAATGTGATTGGGAGGTTTGATGATAGAAGATTTAAAACAAATCAATCTTATAGGACCAAGAAATGCTAATTAATGTATCTATTCATGCATACCTTATATTATGATATATGAGAAAAAAGCTGTTGAGTCTTATATTTTGGGATGGAGGGAGTAAACTTATGTTGCTTTTCCTCATGATCTAGCGCATACCAAGATACTTTGATCCTGGTGAAACTTTATTGGAAACATGCTTTAATTGTGGTGAGGAGGGTCATGTAGCTGTGAACTGTCCAATGGAAAAGCGGAAGAGGCCTTGTTTTGTTTGTGGGTTGTTTGGACACAATTCAAAGCGGAAGAGGCCTTGTTTTGTTTGTGGGTAGCTCCAAGGCATTATTGCTTGGTGACTTGGGTATGCATGCTCATGCCCTTGACAAGATCATCTTATTTAGTTCTCCATTAATTACATGATGTTGCTGCATTTGTTATTTCAACTCATAAGTTAACATGCTTGCCTTGTTTAGATAGGTTCTAGAATTCCAGTTCATTAATCACACATATTTACTTCACAAATTTTGACAATTTGACCCTTTGCAAAAAACTATTTTTTACAAATGAACCGCCGCCAAAACTTATTTCAAAACTGACCCTTTTGCTTAACACCAAATCGTGTGGCGCTGAACATAGACATCTCAGTGCCAAATAGCATAGCACTGAATGTACGTTGGCATGCTGACTTAGCCTCCCATCCGCCGTGGCACGACATTCAGCGCCAGCTGAAGTGGAGCTGAGGTGTTTAAATTCAGCGCCACATGATTTGGCGTTGAAAAAAAAGGTTATTTTTGAAATAAGTTTTGGGGGCGGTTCATTTGTAAAATTAGTTTTTTTCAAAGGGTCAAATTGTCAAAATTTGTGTATTTACTTGCCCCTGCCAATTTCAGGAATCAAACATTTGTTAATCATTTTTGTAGGGTCAAGACTGTTTCATCTGCAAAAAAGGAGGTCATATTGCGAAAGACTGCCCTGAAAAGCACAATAGGAATGCTATCAACAGTCTACATTTTATGTACGATGTGGAGAATCAGGGTCCTGATATGTTTGGATATGCCAATGATTATCCACGCGATGATGTTAAGGTCAGTATTGTTTTCTCATGGAGGGATACTTGCCTAAGGAAAAAAAAATCTAACTCAACATATCTTTAAAACCATCTCTCACTTTTAATATGCAGTGGTTACAATCTAAATCCTACTGCTAATGCAAACTGTGCTGCTTCAGAATATACCTATGAATGAATTGTGGTTTTGTCATTTTCGTTGATCCAGCTTTATGTTCTATTCACAAGCTTGGTTAGATTTTGTGAGCTAAGGTTAATTTTACATTAAGCCCTTCCTTATACTTCTGTGTTAGTCGAATCCCTGAATCCACATGTTTTGTCCACTTAATTAACATGCAATATAACGCAAATCATTCTCTTATGTAACACAAAAGTCCTGTAGCAGCGAGATTGCATTAATTGAAGTCATAGTATTATCCAAACTTATTTTCCCCCTCAACATCTACTTTGTTGGTCTGTGCAGGAAGAAAATTGCTATGCGTCCGACTGATATGTACAACTTACATCCGACAAGGGCGGAGCTAGAGTATTTGGGGGAGGGGGGGAGGACGGCTAGGAACCCGTTCAAGAAAAAATTGTACCTATACCTGAATATAAATTTAGGCACTGGTATTAGCTTAAACTTGATATAAAGCAGAGTAAATTAAATAAGTGGCACCCCCCTCCATCTCGCTCTAGCTTCGCCCCATTCCCACTAGTGTATATATAGGCATAGATGCTGCTTGTTTGGGTCCACATGATAAGAAACAAGCTCAGTGATTAGTAGATATGACATAGTCAGACACGAGTCGGATGGCTCGGTCATACGTATAGCAGGTTTCGTGCAGGAAATAAAATGCTATGTGTGTACGTAATCAGAAAGGTCATCTTTGTTGCGCCGACTTCTCTGATATCTGTCCAAAAGAAGTTGTTATAATTCTGCCCAACCTGGCCATACTGGTTTGGTAAGTTTAGTGGTTATTAACTTATTATGGCTTCCTTGTTTCTATATGTTACTTCTCACAGCAGCTGATCAATGTCTTCTGATACAGGGATGTGCCAAGCAACGTACGTAGGGAAGCTAGTACCGCGGCAACTCCAACTTTGTGTTACAAATGTGGCGAGGAAGGCTACTTCGCACGTGGATGCACAAAGAACACCAAGGTTGTTAGAAGCATCTTATTAATATATTGTCTACTGATAGTGATAAGAGCTGCTTGGGTTATTTATCCTGTGCACATCCTGGTTCCTTTTTAATTTGCAGTCTGATCGTATGAACGGTGAATCATCCGCACATAGGCAGTGTTTAGTTCCAAAGTTTTTTTCCAAACTTCCAACTTTCTATCACATCAAATCTTTCATACACACACAACTTTTCAGTCACATCGTCTCCAATTTCAACTAAATTTCAAACTTTAGGCCAATCTAAACACAGCCATAGTCGGAAAAAAGGCAAAGGCAAGAAAGATTTTGGCACTAGGGCTGTGTTTAGCTCATGTCAAAATTGGAAGTTTGGTTGAAATTGAAACGATGTGATGGAAAAGTTAGAAGTTTGAAGAAAAACTTTGGATCTAAACAGTCAGCTCCTTATGATGCTCACAAGACAAGTAAAAGGAAAATCCCCTTATTTGAGGAAAGAAGGAACTCATCTCATTTTAAATCCAAAGCTAGGGGTGGTTGGATTGCAGACGATGCAGATGACCAACCATAAAGAAGTACAAACCCAATGTGTGGGCTTCTCCATCTACCCCTAAAAAGCAATACAGTAACCATCAGTTTTCCTATGGCGGTGACTACTCTACTCCTCAGTCATCAAGTAAGCGGAAACGTCGAGCGCAACTTAAGATGAAGATAAAGATCAAGTGTTTCACGCAAAACGAGGTGACATATGATTAATTATGTTTTAATTATTATAAATTTAAAAAATCGATTAATCTGATATTTTAGAGCAACTTTCATATAGAAAGTTTTCGCACGAAACGTACCGTTTAGCAATTTGAAAAACGTGTCATGAGTATCCAAAATTTCATTTTTTGTTGGAGAAACGAACGCAGCCACTCACCAAACGCAAGGAAGCATAGCTTTTCGTCGTCGAGATTTGCCAGCAACACTCGTGTCCGGTTTGGAAGAAGCTAGCTGGATGCTAGTTTTTGATTTTTTTTTTTTTTGCCGTTCTGTTTACAAACACAATTGATCATCTCTTGTGCCTGCAAGGGCTGTTTCTGTATCTTAGATTACACATGTTGTGTTACTCCTGCTCAGTTCCAACTTCCTTTACTTCCCCCTTTCCAGCTCCGAGCACGCTTTCCCGGTGAAATCT
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| CDS seq | TGTGCGGATTTGTTATTTCCGTCTCAAGTTGCTAGGACCCAGGAGGCGCAAACTGGCACAGCAGAATCAGTGCTCACTGAAGATGGGCCTGATGTCCCTTTATCTGACAGTATTGTTTTACGGAAGCTTCTTTTAAGTACTAAATACTTTGATCCTGGTGAAACTTTATTGGAAACATGCTTTAATTGTGGTGAGGAGGGTCATGTAGCTGTGAACTGTCCAATGGAAAAGCGGAAGAGGCCTTGTTTTGTTTGTGGGTTGTTTGGACACAATTCAAAGCGGAAGAGGCCTTACTGTTTCATCTGCAAAAAAGGAGGTCATATTGCGAAAGACTGCCCTGAAAAGCACAATAGGAATGCTATCAACAGTCTACATTTTATGTACGATGTGGAGAATCAGGGTCCTGATATGTTTGGATATGCCAATGATTATCCACGCGATGATGTTAAGGAAATAAAATGCTATGTGTGTACGTAA
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| Protein seq | CADLLFPSQVARTQEAQTGTAESVLTEDGPDVPLSDSIVLRKLLLSTKYFDPGETLLETCFNCGEEGHVAVNCPMEKRKRPCFVCGLFGHNSKRKRPYCFICKKGGHIAKDCPEKHNRNAINSLHFMYDVENQGPDMFGYANDYPRDDVKEIKCYVCT |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0575200 | OsNip_11t0575200-00 | Chr11 | 21654096 | 21657770 | + | RAP2018-11-26 | ||
| CDS seq | TGTGCGGATTTGTTATTTCCGTCTCAAGTTGCTAGGACCCAGGAGGCGCAAACTGGCACAGCAGAATCAGTGCTCACTGAAGATGGGCCTGATGTCCCTTTATCTGACAGTATTGTTTTACGGAAGCTTCTTTTAAGTACTAAATACTTTGATCCTGGTGAAACTTTATTGGAAACATGCTTTAATTGTGGTGAGGAGGGTCATGTAGCTGTGAACTGTCCAATGGAAAAGCGGAAGAGGCCTTGTTTTGTTTGTGGGTTGTTTGGACACAATTCAAAGCGGAAGAGGCCTTACTGTTTCATCTGCAAAAAAGGAGGTCATATTGCGAAAGACTGCCCTGAAAAGCACAATAGGAATGCTATCAACAGTCTACATTTTATGTACGATGTGGAGAATCAGGGTCCTGATATGTTTGGATATGCCAATGATTATCCACGCGATGATGTTAAGGAAATAAAATGCTATGTGTGTACGTAA
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| Protein seq | CADLLFPSQVARTQEAQTGTAESVLTEDGPDVPLSDSIVLRKLLLSTKYFDPGETLLETCFNCGEEGHVAVNCPMEKRKRPCFVCGLFGHNSKRKRPYCFICKKGGHIAKDCPEKHNRNAINSLHFMYDVENQGPDMFGYANDYPRDDVKEIKCYVCT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g36480 | SBH | 1.554114 | 1.645969 | 1.431646 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0575200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0018040 | SBH | 0.992018 | 4.544027 | 6.878465 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0018210 | SBH | 0.0 | 2.219478 | 1.815485 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0017970 | SBH | 1.358237 | 3.656014 | 7.148354 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0017650 | SBH | 0.126968 | 0.328124 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0018070 | SBH | 9.706241 | 12.832300 | 9.408218 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0334600 | SBH | 3.799069 | 10.578615 | 24.1953285 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0018540 | SBH | 0.604430 | 1.036914 | 1.076195 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0347600 | SBH | 8.5726725 | 17.8601675 | 25.012202 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0018360 | SBH | 0.251781 | 0.261664 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0018490 | SBH | 0.425860 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0017980 | SBH | 0.0 | 10.024766 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0017810 | SBH | 0.131099 | 0.0 | 0.327467 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0017950 | SBH | 0.152357 | 5.758921 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G017930 | SBH | 0.692604 | 3.094007 | 2.389283 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0018220 | SBH | 0.973466 | 28.041712 | 5.381395 |
