Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0573350 | OGI:11063200 | 6/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:21530692-21531951 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TGGCCCCACCCCGGCTGCTGCGGCGGCGGAGCTCCTCCGCCGGGTCGCGGCGCCCGGGGTCGACCCGTGCCCGGCGCTGCGTAAGCTCGCGGCGTTCCTGTCTGACGACGACGTCGACGAATTCGACAAGAACGCGCTCGCGAGGGCCGGTGGGCGGTGGCGCGGCGGAGACCGTGGCGTCGGTGCTCCGGAGGAGGGGGAAGGGCGATGATGATGATGGCGGCGTGGAGGCCGTCGAGGCGGCCGTCCGGGTGCTCGCGGTGCTCGCCACGTCGGACTGCATCGAGGAGGAGAACAGGAGGCGCGTCGTCGCCGCGCTCGCCGCGGGGGGCGCCGCGCCGTCGGTGGCGGCGTCGCTGGCGCGCGTGATGCGGAGCGGGAGCGGGCTCGAGGCCCGCGTCGACGCGGCGAGGCTGGTGGAGTCGCTGCTCCGGGACGGCGGCGAGGATGATGAAGTGCGGCGGGATGGGCGGCGCGGAGGCGGCGGTGTCCGTGCTGTGGGCGGTGTGCCACCGGTACAGGGACCGGCGCGCGGCGGAGGCGGCGGCGGCGTCCAAGGGCGGGCTGACGAAGCTGCTCCTGCCGATGCAGAGCGGGTGCTCGCCGGCGGCGAGGCAGATGGCCTCGGAGTTCCTTAAGATGTTCAAGGTGAACGCCAAGAGCTGCCTCGCCGGCCATCCTGCACCGAGACCTCTTCAACGGCGGTGGCGGCGGCGGAACGCGTGTGCGGGCATGGAGCACGCGCACGGCGAGGACACCCGAGCGCCACGCCACGCCGTGTCGTCTCGTCTGAGCTTGCTGCTGCCGTCGCCGGTCTGGATGAGGCGGCGGAGGCGGAGACGTGCACCACAAGACAAGACTGGGCCCCCACATTACTGGTGGGCCCTGACCGGACAACCAGACCAAATTCCGCCACCTCCGCTTCCGTCGCTTCTAGAAGCCGACGGTTATTTATACCCCCGGCTCTTTCTTCATTCCTCGCCTCGCCTCGCCTCGCCTCGCCTGAGCCCCAAGCCCCCAACCTCAATCGCACCGGCGACCGGAGCTCGCTCCACCCCCACCCCGCTGCCGCCGGCAAGAGGGTGGCGCTCTGCTGCGACGTGCAGAGTCCAGCTGCCGACAACACGGCCGCGCGCTCGCTCCGGGAGGGCAGGGAGGCCAGGCAAAGAGGCCAAGAACACGCTCAAAAATCAAGAACGCGTGACATCGATCTGCGCATGGCGACGCCACCGCCACCAGCTGTTCAAAAGATCAAGGTAG
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| CDS seq | ATGATGAAGTGCGGCGGGATGGGCGGCGCGGAGGCGGCGGTGTCCGTGCTGTGGGCGGTGTGCCACCGGTACAGGGACCGGCGCGCGGCGGAGGCGGCGGCGGCGTCCAAGGGCGGGCTGACGAAGCTGCTCCTGCCGATGCAGAGCGGGTGCTCGCCGGCGGCGAGGCAGATGGCCTCGGAGTTCCTTAAGATGTTCAAGGTGAACGCCAAGAGCTGCCTCGCCGGCCATCCTGCACCGAGACCTCTTCAACGGCGGTGGCGGCGGCGGAACGCGTGTGCGGGCATGGAGCACGCGCACGGCGAGGACACCCGAGCGCCACGCCACGCCGTGTCGTCTCGTCTGAGCTTGCTGCTGCCGTCGCCGGTCTGGATGAGGCGGCGGAGGCGGAGACGTGCACCACAAGACAAGACTGGGCCCCCACATTACTGGTGGGCCCTGACCGGACAACCAGACCAAATTCCGCCACCTCCGCTTCCGTCGCTTCTAGAAGCCGACGGTTATTTATACCCCCGGCTCTTTCTTCATTCCTCGCCTCGCCTCGCCTCGCCTCGCCTGAGCCCCAAGCCCCCAACCTCAATCGCACCGGCGACCGGAGCTCGCTCCACCCCCACCCCGCTGCCGCCGGCAAGAGGGTGGCGCTCTGCTGCGACGTGCAGAGTCCAGCTGCCGACAACACGGCCGCGCGCTCGCTCCGGGAGGGCAGGGAGGCCAGGCAAAGAGGCCAAGAACACGCTCAAAAATCAAGAACGCGTGACATCGATCTGCGCATGGCGACGCCACCGCCACCAGCTGTTCAAAAGATCAAGGTAG
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| Protein seq | MMKCGGMGGAEAAVSVLWAVCHRYRDRRAAEAAAASKGGLTKLLLPMQSGCSPAARQMASEFLKMFKVNAKSCLAGHPAPRPLQRRWRRRNACAGMEHAHGEDTRAPRHAVSSRLSLLLPSPVWMRRRRRRRAPQDKTGPPHYWWALTGQPDQIPPPPLPSLLEADGYLYPRLFLHSSPRLASPRLSPKPPTSIAPATGARSTPTPLPPARGWRSAATCRVQLPTTRPRARSGRAGRPGKEAKNTLKNQERVTSICAWRRHRHQLFKRSR |
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| Function | U-box domain-containing protein 27 [UniProtKB/Swiss-Prot:Q9FLF4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0573350 | OsNip_11t0573350-00 | Chr11 | 21530692 | 21531951 | + | RAP2018-11-26 | ||
| CDS seq | ATGATGAAGTGCGGCGGGATGGGCGGCGCGGAGGCGGCGGTGTCCGTGCTGTGGGCGGTGTGCCACCGGTACAGGGACCGGCGCGCGGCGGAGGCGGCGGCGGCGTCCAAGGGCGGGCTGACGAAGCTGCTCCTGCCGATGCAGAGCGGGTGCTCGCCGGCGGCGAGGCAGATGGCCTCGGAGTTCCTTAAGATGTTCAAGGTGAACGCCAAGAGCTGCCTCGCCGGCCATCCTGCACCGAGACCTCTTCAACGGCGGTGGCGGCGGCGGAACGCGTGTGCGGGCATGGAGCACGCGCACGGCGAGGACACCCGAGCGCCACGCCACGCCGTGTCGTCTCGTCTGAGCTTGCTGCTGCCGTCGCCGGTCTGGATGAGGCGGCGGAGGCGGAGACGTGCACCACAAGACAAGACTGGGCCCCCACATTACTGGTGGGCCCTGACCGGACAACCAGACCAAATTCCGCCACCTCCGCTTCCGTCGCTTCTAGAAGCCGACGGTTATTTATACCCCCGGCTCTTTCTTCATTCCTCGCCTCGCCTCGCCTCGCCTCGCCTGAGCCCCAAGCCCCCAACCTCAATCGCACCGGCGACCGGAGCTCGCTCCACCCCCACCCCGCTGCCGCCGGCAAGAGGGTGGCGCTCTGCTGCGACGTGCAGAGTCCAGCTGCCGACAACACGGCCGCGCGCTCGCTCCGGGAGGGCAGGGAGGCCAGGCAAAGAGGCCAAGAACACGCTCAAAAATCAAGAACGCGTGACATCGATCTGCGCATGGCGACGCCACCGCCACCAGCTGTTCAAAAGATCAAGGTAG
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| Protein seq | MMKCGGMGGAEAAVSVLWAVCHRYRDRRAAEAAAASKGGLTKLLLPMQSGCSPAARQMASEFLKMFKVNAKSCLAGHPAPRPLQRRWRRRNACAGMEHAHGEDTRAPRHAVSSRLSLLLPSPVWMRRRRRRRAPQDKTGPPHYWWALTGQPDQIPPPPLPSLLEADGYLYPRLFLHSSPRLASPRLSPKPPTSIAPATGARSTPTPLPPARGWRSAATCRVQLPTTRPRARSGRAGRPGKEAKNTLKNQERVTSICAWRRHRHQLFKRSR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g36660 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0573350 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0018220 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0334600 | SBH | 3.799069 | 10.578615 | 24.1953285 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0018550 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0018500 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G017940 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0018230 | RBH | 0.0 | 0.0 | 0.0 |
