Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0572900 | OGI:11063100 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:21495107-21495861 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTGTGTTAAGTTATTAACTTGAATATTGAATTTCTTGATGAGATCAACAACTTCCTTTCTTGGCACAGTGGCGCCTGCAGGAAATAAATATTAGTGACGCGCCTCCTTCATTTTCATAATTCTTTAAATTAACATATATATAGCTCAGCAGAATGAAGGACCACACAACAAGCAGTGCTAACGGGAGTACGGAAGGTGAGGCAGTGAGGAGGAGGTTATACCATCGAGCTGCCACTCGGACTTGTTCTTGGTATCGATCTTCCTCGTGATGCGGATAATGTGTTCGGGTGTGTTCCCGCGAGTGAAATCTTGACATGGCCGGACTCCTCCCCCCTCTTGACGAACGCCCCGACGCTGGCCACCCTCCCGAGAACCTGCATTCCGTTCACGCACGCATTTGTTCATACACTTAGCCGTCGTATTCGCATAAGAGGGGGGAAAAAAACAGTTGCCGCGGGAAATGTAAGGAGGCAGTAGGTGTGTACGTACGCCGGGGTCAGCGGCGAGGGCGAGGGCGATGGCGCAGACGAGGGAGCTCTTGCCGGAGCCGTTGGGGCCGAGGACGAGGTTGAGGCGGGGGCCTGGGCGGCAGGCGAGGCGGTGGTAGGTCATGAAGTTGGAGAGCTCGATCTCGACGATGTTCCCCGGCACGTAGCCGCCGTCCCCGCGCCGCAGATGCGTCGGCGTCGGCGTCGGCGGCGGCGGGGCGGCGATCCTGGCGCGCTTGGCGGCGCGCGCGGCGGAGGTCGCCATGG
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| CDS seq | ATGGCGACCTCCGCCGCGCGCGCCGCCAAGCGCGCCAGGATCGCCGCCCCGCCGCCGCCGACGCCGACGCCGACGCATCTGCGGCGCGGGGACGGCGGCTACGTGCCGGGGAACATCGTCGAGATCGAGCTCTCCAACTTCATGACCTACCACCGCCTCGCCTGCCGCCCAGGCCCCCGCCTCAACCTCGTCCTCGGCCCCAACGGCTCCGGCAAGAGCTCCCTCGTCTGCGCCATCGCCCTCGCCCTCGCCGCTGACCCCGGCGTTCTCGGGAGGGTGGCCAGCGTCGGGGCGTTCGTCAAGAGGGGGGAGGAGTCCGGCCATGTCAAGATTTCACTCGCGGGAACACACCCGAACACATTATCCGCATCACGAGGAAGATCGATACCAAGAACAAGTCCGAGTGGCAGCTCGATGGCGCCACTGTGCCAAGAAAGGAAGTTGTTGATCTCATCAAGAAATTCAATATTCAAGTTAATAACTTAA
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| Protein seq | MATSAARAAKRARIAAPPPPTPTPTHLRRGDGGYVPGNIVEIELSNFMTYHRLACRPGPRLNLVLGPNGSGKSSLVCAIALALAADPGVLGRVASVGAFVKRGEESGHVKISLAGTHPNTLSASRGRSIPRTSPSGSSMAPLCQERKLLISSRNSIFKLIT |
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| Function | Structural maintenance of chromosomes protein 5 [UniProtKB/Swiss-Prot:Q9LFS8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0572900 | OsNip_11t0572900-00 | Chr11 | 21495107 | 21495861 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCGACCTCCGCCGCGCGCGCCGCCAAGCGCGCCAGGATCGCCGCCCCGCCGCCGCCGACGCCGACGCCGACGCATCTGCGGCGCGGGGACGGCGGCTACGTGCCGGGGAACATCGTCGAGATCGAGCTCTCCAACTTCATGACCTACCACCGCCTCGCCTGCCGCCCAGGCCCCCGCCTCAACCTCGTCCTCGGCCCCAACGGCTCCGGCAAGAGCTCCCTCGTCTGCGCCATCGCCCTCGCCCTCGCCGCTGACCCCGGCGTTCTCGGGAGGGTGGCCAGCGTCGGGGCGTTCGTCAAGAGGGGGGAGGAGTCCGGCCATGTCAAGATTTCACTCGCGGGAACACACCCGAACACATTATCCGCATCACGAGGAAGATCGATACCAAGAACAAGTCCGAGTGGCAGCTCGATGGCGCCACTGTGCCAAGAAAGGAAGTTGTTGATCTCATCAAGAAATTCAATATTCAAGTTAATAACTTAA
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| Protein seq | MATSAARAAKRARIAAPPPPTPTPTHLRRGDGGYVPGNIVEIELSNFMTYHRLACRPGPRLNLVLGPNGSGKSSLVCAIALALAADPGVLGRVASVGAFVKRGEESGHVKISLAGTHPNTLSASRGRSIPRTSPSGSSMAPLCQERKLLISSRNSIFKLIT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.491500 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g36460 | RBH | 0.0 | 0.335377 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0572900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0018000 | SBH | 0.000000 | 0.833849 | 0.488470 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0018180 | RBH | 0.0 | 0.000000 | 0.360600 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0017940 | SBH | 0.0 | 0.0 | 2.110487 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0017610 | SBH | 0.000000 | 0.123532 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0018040 | SBH | 0.000000 | 0.660079 | 2.292700 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0334400 | SBH | 0.444288 | 0.983309 | 0.5455805 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0347200 | SBH | 1.001507 | 1.1203305 | 4.9379005 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0018320 | SBH | 0.021285 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0017940 | SBH | 0.0 | 3.864717 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0017780 | SBH | 0.000000 | 0.0 | 0.240805 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0017910 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G017900 | RBH | 0.024754 | 0.0 | 0.093446 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0018190 | RBH | 0.0 | 0.0 | 0.0 |
