Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0550800 | OGI:11060920 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:20478291-20478867 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CATCAAGTAAATCAATATATATAAAGCAGCAACCATTTTAAACAGTACCATCCAAGATTTTGGTCACAGACAAACAAGAGAAGCAATAACACCAAACCTAGCAATGAACGAGCAATTTCGTAGAAAGAGACATGGCCGGAATCAGTCGTCGGCGGCGGCCGGGGCCGCCACCACCTCGACGACCGGAGCGGCCACCGGCTCCGGTTCCTCCTCATCCGCATCCTCGGCCTGCGCCGACGCGTCGACCGTGGCGCCGGCGGCGACGAGCGTCCAGTCCGGCGGGAGAGCCGGCAGCGGCCGGTACTGCGTGGGGCGGCGCTTCCTGTCCCACGGCTGCGACTTCTTGGGCCGCGTCTTCATGTGGTGCTTCGTCGCCTTCTTCTGCGGCCGCGACGAGCACTCCACCGCCAGCGCGCACCCTCCTCCGACGGGGGAGTATCCCGGGGGCGCCACGCGGGACGGCCTCCGTGCCATCGCCGGAAGCGGCGCGGCGGCGCCTGCGAGCAACGCGGTCACCGGCGACATGGAATCGGGTTCTTGGAGCGGGAGAGAGAGAGAGCGTGGAATGGGGTTTGGG
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| CDS seq | ATGTCGCCGGTGACCGCGTTGCTCGCAGGCGCCGCCGCGCCGCTTCCGGCGATGGCACGGAGGCCGTCCCGCGTGGCGCCCCCGGGATACTCCCCCGTCGGAGGAGGGTGCGCGCTGGCGGTGGAGTGCTCGTCGCGGCCGCAGAAGAAGGCGACGAAGCACCACATGAAGACGCGGCCCAAGAAGTCGCAGCCGTGGGACAGGAAGCGCCGCCCCACGCAGTACCGGCCGCTGCCGGCTCTCCCGCCGGACTGGACGCTCGTCGCCGCCGGCGCCACGGTCGACGCGTCGGCGCAGGCCGAGGATGCGGATGAGGAGGAACCGGAGCCGGTGGCCGCTCCGGTCGTCGAGGTGGTGGCGGCCCCGGCCGCCGCCGACGACTGA |
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| Protein seq | MSPVTALLAGAAAPLPAMARRPSRVAPPGYSPVGGGCALAVECSSRPQKKATKHHMKTRPKKSQPWDRKRRPTQYRPLPALPPDWTLVAAGATVDASAQAEDADEEEPEPVAAPVVEVVAAPAAADD |
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| Function | 50S ribosomal protein 6, chloroplastic [UniProtKB/Swiss-Prot:Q9FKP0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0550800 | OsNip_11t0550800-01 | Chr11 | 20478291 | 20478867 | - | RAP2018-11-26 | ||
| CDS seq | ATGTCGCCGGTGACCGCGTTGCTCGCAGGCGCCGCCGCGCCGCTTCCGGCGATGGCACGGAGGCCGTCCCGCGTGGCGCCCCCGGGATACTCCCCCGTCGGAGGAGGGTGCGCGCTGGCGGTGGAGTGCTCGTCGCGGCCGCAGAAGAAGGCGACGAAGCACCACATGAAGACGCGGCCCAAGAAGTCGCAGCCGTGGGACAGGAAGCGCCGCCCCACGCAGTACCGGCCGCTGCCGGCTCTCCCGCCGGACTGGACGCTCGTCGCCGCCGGCGCCACGGTCGACGCGTCGGCGCAGGCCGAGGATGCGGATGAGGAGGAACCGGAGCCGGTGGCCGCTCCGGTCGTCGAGGTGGTGGCGGCCCCGGCCGCCGCCGACGACTGA
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| Protein seq | MSPVTALLAGAAAPLPAMARRPSRVAPPGYSPVGGGCALAVECSSRPQKKATKHHMKTRPKKSQPWDRKRRPTQYRPLPALPPDWTLVAAGATVDASAQAEDADEEEPEPVAAPVVEVVAAPAAADD |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 5.566489 | 8.856695 | 3.239491 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g34940 | RBH | 3.347048 | 5.170133 | 0.770631 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0550800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0017050 | RBH | 2.071062 | 0.0 | 1.093462 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0017130 | RBH | 0.441462 | 0.0 | 1.808333 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0016990 | RBH | 9.218436 | 0.0 | 9.065273 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0016630 | RBH | 1.545697 | 0.306689 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0016920 | RBH | 23.853918 | 0.0 | 18.102581 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0321300 | RBH | 145.4853975 | 16.3387105 | 6.2398335 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0017390 | RBH | 0.755188 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0329700 | RBH | 31.9117595 | 6.456709 | 4.875602 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0017260 | RBH | 1.398035 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0017270 | RBH | 1.704075 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0016800 | RBH | 32.327568 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0016640 | RBH | 2.486684 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G016760 | RBH | 1.279790 | 0.0 | 0.618193 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0017100 | RBH | 4.033190 | 0.0 | 3.982566 |
