Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0518600 | OGI:11055370 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:18608152-18611496 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGAGACACCGCGAAGCCTTTAATCCGGGAGGGTTCTAGAAACATCTAGGCTCTTCTCAGGCCCCGGCCCCGGCCGCGAACGATCACCGTTCACCACCACCGCCTCCGCCGCCGCCGTCTCTTCCTCCCCCGCATTCCACCCCCCGCGCCCTAGCGCAGCAACCAACTCAACCCACCCCTACCCTTCTTGCGTAATCTTCGCTGGCCGGCGGCGGCGGCGACGGCGGCTCGCGAGCGCGGCGCACGGTCTCCCCCGCCCCGCCCGCCGCGCGACGGTTAGCCGGCGCCGCAGCTCCTCGCGTTCGGAGCACAGGCCACCACCCGAACGCGGCCCCTCATCGCGCGCGGCTCCGTGCAGCCGCGGACCTCGACGCCCGGCGGCTCCTCCATTCCTGCCGCAGGCAGGCCTCTCTCCACGAGACGACCGGAGGCTTCCGCGCGCGCGGGGGGGCCCGAACAGCAGCGGCTCCCGTGAAGCACCCGCCGCCGCCGCCGCCGCGCCGCGTGCCGAGACGACAGGTGAATCCCATTTCCGTGCGGCCGGGCGGCCACTTCCGCCGCCTCAACCGCGTACCTCGACGACCGGCGGCGCTGCTCACGGTCGGCGGCGTCCCCGAAGGCTCGCTCAACCTCGCCGCAGCGCGCGGGAGCTTTCCCGAAGGTTCTACCTAACACCTCTCTCTCGGGGCACGACCCTTGCCTCCCCCAAGGCTCAACCTCCCGGCGGCGCGCAGCCGGCCTTCTCAAGTGCTCGCCCTCGCCGTGCGCGCCCGTAAGTGCCATGACCTGAAACTAGATTGTGCATTTTCAATCTACAAGTTGCAAGGTTACTAACGCATACATATTTTCAGATTTAAAGTTTACTGGTAGATAATTTCATATAAACTTTTTGAACGACAATTTCATACAAACTTGATTCTTAAAGTGCTCATCGTTTTGATTTCTGCAGTAATGGTACTTCAGGAAATTCCATATTGATCTTAATGAACGCCTCCCACCATGCAATCTAATTTGGTGATACTGAATATAGGTAATAAACTAGTTTAACAGGTAGTAAGTACCCATAGCTATAAATGCAATATTTGAGGTGCTTTGTCATATTTATATTCACATTCATATGTTGTCCGAAATTCTGAAAGAAAGCATTGTTGACTACATTTGGATAAAATGCTATCAAGTTATGGGGGACTGAAATTTTGGCTGCCTGGCTGCTCCAATCGAGCACTGGATACTACTTTATTGTGTTTAAATTTTCAGGCGTTCTGTCTCCTAGTCCCCCCCCCCCCTCTCTCCCTCTCCCTCTCCCCTATGCAACTCCATGCTCTAACCAAATTTCTCCTTCAAAATCATTGCACTGCTACACTTCTTTCTCATTTCTGCAAGCCACACCCAGTGAGCCGATGAGGCATTCGAACATTAAATCAAACCTTTGATAATCACTTGCTCGTTAGCTTAAGATATGGTTGGCGATTCACTTCAATTTCAGGAAATGATAGTTTACACTAGCGGCAAATGCTAATTCTAATGAAATTATCAATGTTAATTATGATCTGGTTGATAGTCATAGTGCTACATTTAAAATTAACCGATATGTATCTATGTAAATATGTATGTAGTATGTTCCGATAGAGACCAAATGATAGGCATGCAAACGAATTTTTTTGTCTGTTGTCAAACCGTCATAATGTACTATATACCATGTAAAGCCTTGGAATGTACGCATATTGTTACTACACTATTTTTATGTGATCATTGGCGCTTAACAACTTCACCTCCTCATGACCAAATCCCAACTCTACCACTAGCATAGTAATCCAGTAAGGAGTGATTGCTTGGGTATGTTTGGACCGTTTGCTTTGAAGAGCAAAGAAACCAATGAACTTTCCTTTCCTGCTCAGCTAACTTGTCCGCTGAAGCATATATTTTTCTTTTGGGCTTAAATGCTGATATGTTTGTAGAGTATGTTCACGTTCCAATATATGTTGTCTTGACCAGCTAATTTTGAAGTTTGCAGGTTTTTCTACATCTTCTGAAAATGGCAGAAGTGATTACAGATGCACCTCTTTCAGTAAAAACCAAAGTATGCAATCAGTACTTTCCAAACCATGCCTTTATCTAACAGATAACTTTTTTTAGTTATCTTCATTACTTCACTTAATTATATCTGCATACAGTCATAAATGTGTGTGTGCTTTAAGCACATTTTCTTATTTTATTTTTCAACTAATTGTAGGCTGTTGACATGCTGGAGTGTTATTTGATTGATGCGGATGTGAAAAGAATGGATGATGATTTAAAGTACTGTCAAGGTTCTATTCGATATGGATTTGACATCTCATCTTCAATAAAGACAACTTTCCTTTTGTTTGAGGATAATAGAAGTGCACAAGACACAGTTGATAAGTTGAATTTAATGAACCACCCGTCCATTATGAGAAGCTTAGGTGATGTGATTTGTTTCGACCAACACCTTCCAAATCATGTTCTGCCTTTTCCTTATTTCGACACGACCTATGCTGACTATCTAGACAAGAAGAGCAATAAAACTTTTGAGTTCAAGAGATTTACACCGGAATTTATTCAATTGACTAGGTAAGTTCTTTTACACATCAATTATATGCATGTATTTAAAAATTTATAATTTATTTGGTTATTTAAATGTTTATAGCCAGGTAGTCCATGGAATGTCAGCTCTGCAAGAAAAAGGATTTTGCTGTCCAAACCTGGAGGGCAAAGATATCTTCAAGGAGAATAATTGTATCAGTGCGAAGATATGGCATTTCTGCATTTGCACAGGTTGCACAGGAGGTAACTGTAATTTTTCATTTATTGTGCATCAGAGTACAAATTTTATAGACTTTGTGTAACTAAGTCACATTATATAAACTGCTTAAGCACACCCATATAACAAGTTCAACATAGAAGTTGTGGGACTTTGTACCCATCTTACAAGTTGTTTTACCTTAAATGCATACTACTTTTCCAATATAAATGGAAGTGATCATTTCTAATTTTTTTTAGTTTCTTGCACTCATTGTAGATAAGCATACTGATTGGAGGAGGCTTGGACAATTACTTAAAAAGACTGCTGTTGACCACAAATGCCTTACTATAGAAATTGAAGATCTGTGCACTAAGATAAACAAAGGCATACTTGAAGGGTATGCTCTTATCCTTTCTCTTTTCGAATGTTGAGCTATGTTTTTATAGAAAATTGGAGAACTGATATTAGCGCTACAAAATATGTAATTTTTTTCTTGGCTGAGAAAGAAATTATGTTTTGATAATTCATACTGTAGCTATTGAGATACACTGCGAATAAAACTTTGCATGAAGTGTCTCTGTG
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| CDS seq | ATGGCAGAAGTGATTACAGATGCACCTCTTTCAGTAAAAACCAAAGCTGTTGACATGCTGGAGTGTTATTTGATTGATGCGGATGTGAAAAGAATGGATGATGATTTAAAGTACTGTCAAGGTTCTATTCGATATGGATTTGACATCTCATCTTCAATAAAGACAACTTTCCTTTTGTTTGAGGATAATAGAAGTGCACAAGACACAGTTGATAAGTTGAATTTAATGAACCACCCGTCCATTATGAGAAGCTTAGGTGATGTGATTTGTTTCGACCAACACCTTCCAAATCATGTTCTGCCTTTTCCTTATTTCGACACGACCTATGCTGACTATCTAGACAAGAAGAGCAATAAAACTTTTGAGTTCAAGAGATTTACACCGGAATTTATTCAATTGACTAGCCAGGTAGTCCATGGAATGTCAGCTCTGCAAGAAAAAGGATTTTGCTGTCCAAACCTGGAGGGCAAAGATATCTTCAAGGAGAATAATTGTATCAGTGCGAAGATATGGCATTTCTGCATTTGCACAGGTTGCACAGGAGATAAGCATACTGATTGGAGGAGGCTTGGACAATTACTTAAAAAGACTGCTGTTGACCACAAATGCCTTACTATAGAAATTGAAGATCTGTGCACTAAGATAAACAAAGGCATACTTGAAGGGTATGCTCTTATCCTTTCTCTTTTCGAATGTTGA
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| Protein seq | MAEVITDAPLSVKTKAVDMLECYLIDADVKRMDDDLKYCQGSIRYGFDISSSIKTTFLLFEDNRSAQDTVDKLNLMNHPSIMRSLGDVICFDQHLPNHVLPFPYFDTTYADYLDKKSNKTFEFKRFTPEFIQLTSQVVHGMSALQEKGFCCPNLEGKDIFKENNCISAKIWHFCICTGCTGDKHTDWRRLGQLLKKTAVDHKCLTIEIEDLCTKINKGILEGYALILSLFEC |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0518600 | OsNip_11t0518600-01 | Chr11 | 18608152 | 18611496 | + | RAP2018-11-26 | ||
| CDS seq | ATGGCAGAAGTGATTACAGATGCACCTCTTTCAGTAAAAACCAAAGCTGTTGACATGCTGGAGTGTTATTTGATTGATGCGGATGTGAAAAGAATGGATGATGATTTAAAGTACTGTCAAGGTTCTATTCGATATGGATTTGACATCTCATCTTCAATAAAGACAACTTTCCTTTTGTTTGAGGATAATAGAAGTGCACAAGACACAGTTGATAAGTTGAATTTAATGAACCACCCGTCCATTATGAGAAGCTTAGGTGATGTGATTTGTTTCGACCAACACCTTCCAAATCATGTTCTGCCTTTTCCTTATTTCGACACGACCTATGCTGACTATCTAGACAAGAAGAGCAATAAAACTTTTGAGTTCAAGAGATTTACACCGGAATTTATTCAATTGACTAGCCAGGTAGTCCATGGAATGTCAGCTCTGCAAGAAAAAGGATTTTGCTGTCCAAACCTGGAGGGCAAAGATATCTTCAAGGAGAATAATTGTATCAGTGCGAAGATATGGCATTTCTGCATTTGCACAGGTTGCACAGGAGATAAGCATACTGATTGGAGGAGGCTTGGACAATTACTTAAAAAGACTGCTGTTGACCACAAATGCCTTACTATAGAAATTGAAGATCTGTGCACTAAGATAAACAAAGGCATACTTGAAGGGTATGCTCTTATCCTTTCTCTTTTCGAATGTTGA
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| Protein seq | MAEVITDAPLSVKTKAVDMLECYLIDADVKRMDDDLKYCQGSIRYGFDISSSIKTTFLLFEDNRSAQDTVDKLNLMNHPSIMRSLGDVICFDQHLPNHVLPFPYFDTTYADYLDKKSNKTFEFKRFTPEFIQLTSQVVHGMSALQEKGFCCPNLEGKDIFKENNCISAKIWHFCICTGCTGDKHTDWRRLGQLLKKTAVDHKCLTIEIEDLCTKINKGILEGYALILSLFEC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0517200 | RBH | 0.0 | 0.0 | 1.036952 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g31740 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0518600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0015370 | RBH | 0.0 | 0.0 | 0.626910 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0015330 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0015280 | RBH | 0.0 | 0.0 | 2.833730 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0014920 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0015380 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0293000 | RBH | 0.006951 | 0 | 1.800439 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0015600 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0304000 | RBH | 0 | 0 | 0.186025 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0015500 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0015500 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0015180 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0014970 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0015260 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G015090 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0015410 | RBH | 0.0 | 0.0 | 1.300604 |
