Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0514400 | OGI:11010520 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:18426136-18428231 | ||||||||
| Gene Symbol | OsBDG1, BDG1 | ||||||||||
| DNA seq | ATGTCTAGCGTAATACATTAAAATCATCTATTTTCCACTCCCATTTTCCAGCATGCGTGAGAAAATAAGTCCCGATCTTGGCCTCAGCCTGAGATCTTCAGTCTGTCCTGGATAATTGCAGTCACTGCAAAATGATCGATGCCAATTTCGAAAATTAGTAGATGTAATTAACCATAAACCATCACATCTATATGCATGTATCAAAGAAAGAAACCAAAATCTTAGTTAATCCATCGAAGCTTGCAGATTACACATTCATAGTACCTCTCAGTCCAGTTGATCCGACAGTGCCGTCCAGATTGTTTCTAGCAACATTTCTGCAGGTAAATATCTTTGTTTTTTCAGTAAAAACCATTGTAGAAGAAGCACAATATTATCTGATAAATGCAATTTAATTTATCGGGTAGAACTAAAATTACTCACATCTCAGTCAAATTCCCGACAAGGACAAGGGAGAGGACTTCCAACGGCAGCGTCCCCGTCAGAGAATTCCCGTTCAGCCGCCTGTGGACAAAATACAAAAACTACTGTCATTTTTTTTACTGCAGCAACCGATTTTTACTATGATTATTCGACAGGTTTGCGTCTATACTGTAGACCTTACAAAAGATAAAATTCGGTTTACAAATATAGGGTTCCAAGACTTTTTGATGGTCAGGGTTTCAAAATTTCAGAGTACTGAGATTCTAGGAGATTTCTGCAGAAACTTGTGGTTTTACTTGTGCAAATAGAAGGTATAGTTATATCTCTGTAACTTTGAGAAGCATAATTTTTTTTTTCTTTCGGCACATTTAGGAAGTATCACGTACAAGAACTTCAATGTTTTGATGTTGCCAAGAGAAGCAGGGATGGTGCCACTCAGTGAATTCTTCTGAAGCTCCAACCTGACAAGGTTCGTCAGGTTGCCGAAGGATTGTGGTATGGTGCCAGTCAGGTTGTTGCCATGCAAGTTTCTGCAGAAATATATTTTTGCAAGTTTAAAAAGAAATAGAAAGCAGATAGATGTCAAAACAATCTTTAAACAAACGGTATCAGAAAACACATGGGAGATAGTTTTTGGGATAATGGTTCAGAAAGTTGCGAGTCATACAAGTACTGAAGGTTACTCAGTCCTCCCAGCTGTGGAATCAGAGAGCCTGATAGACCTGCCGATCCCAAATCCCTGCATAAGAAACAGATATTCACAAGATTTATAGAAGTACTATCATTCAGTAGTGTATAAAAACACAAGGAGTCTAGTTTACAGCAAGACGCAGCTATAAAAAAAAAAAAACTTCCTCCGTCCCAAAATATAAGCAGTTTTGGATCTTGACACGGTTTACGATATGCTACTTTGACCAACAATATCTATAAAAGTAAGATGTTTTAAATAAAAAGAGTTATATATTATGATAGTTTATTTAATGATAAATTTAGTAACATCAATTTTGCAGATTGATTTGTTTTATTTTTTATTATTAATGGTCAAAGTTAAAAATATTTGACTTGTCACTCTGCTAAAAATGCTTATATTTTGGATTCTAATTAAGTTCTGAATCTTGAATGGAATGAACAATTCTGAATTTTTAGCTTCCATCCATGTGAAGTACTAGTACCTGAGGAGCTATTCTACTCTTTCCTAGATGAAAATTATCGTAGAGAAAAGCAAATCGCAGCTCCTGATGGTTTGAAGTTTAGACCTACTGAGAATTTCTTTTTCATCTTCAGAACAAGGAAGAACAAGAGGAAAGAGCAAATTGGCATACACACGGATGACAGAGTTGCTATTGTCGCAGGTGACGTGGACCCAAGTGCAGGGATTGACAAGGGTCGGATCCCAGCTCGCCAGCACATTGTTGATGTCCTTCAATTCCTGCCTTTGCGCGTACAGAATGTCACCTTCATATTCAGACCACAACATTGTAAAGTAGCAAACATCTTCAGACAAAAAAATCAGTTAATATGTGTGATTCTAAGACAGCAAATCTAGCTGCCTGTACCTTCAGTGTTGCAGCTCACAAGTGTAGCAAAAGCAAGAAGGGCAGTGAACAGAGCTGCCGCTGCAGAATGAGCCCCCATTGCTGCAAGACCTGAGTAGTTCTTGGCACAATGAAATG
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| CDS seq | ATGGGGGCTCATTCTGCAGCGGCAGCTCTGTTCACTGCCCTTCTTGCTTTTGCTACACTTGTGAGCTGCAACACTGAAGGTGACATTCTGTACGCGCAAAGGCAGGAATTGAAGGACATCAACAATGTGCTGGCGAGCTGGGATCCGACCCTTGTCAATCCCTGCACTTGGGTCCACGTCACCTGCGACAATAGCAACTCTGTCATCCGTGTGGATTTGGGATCGGCAGGTCTATCAGGCTCTCTGATTCCACAGCTGGGAGGACTGAGTAACCTTCAGTACTTAAACTTGCATGGCAACAACCTGACTGGCACCATACCACAATCCTTCGGCAACCTGACGAACCTTGTCAGGTTGGAGCTTCAGAAGAATTCACTGAGTGGCACCATCCCTGCTTCTCTTGGCAACATCAAAACATTGAAGTTCTTGCGGCTGAACGGGAATTCTCTGACGGGGACGCTGCCGTTGGAAGTCCTCTCCCTTGTCCTTGTCGGGAATTTGACTGAGATAAATGTTGCTAGAAACAATCTGGACGGCACTGTCGGATCAACTGGACTGAGAGTGACTGCAATTATCCAGGACAGACTGAAGATCTCAGGCTGA
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| Protein seq | MGAHSAAAALFTALLAFATLVSCNTEGDILYAQRQELKDINNVLASWDPTLVNPCTWVHVTCDNSNSVIRVDLGSAGLSGSLIPQLGGLSNLQYLNLHGNNLTGTIPQSFGNLTNLVRLELQKNSLSGTIPASLGNIKTLKFLRLNGNSLTGTLPLEVLSLVLVGNLTEINVARNNLDGTVGSTGLRVTAIIQDRLKISG |
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| Function | Leucine-rich repeat protein 1 [UniProtKB/Swiss-Prot:Q8H6W9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0514400 | OsNip_11t0514400-00 | Chr11 | 18426136 | 18428231 | - | RAP2018-11-26 | ||
| CDS seq | ATGGGGGCTCATTCTGCAGCGGCAGCTCTGTTCACTGCCCTTCTTGCTTTTGCTACACTTGTGAGCTGCAACACTGAAGGTGACATTCTGTACGCGCAAAGGCAGGAATTGAAGGACATCAACAATGTGCTGGCGAGCTGGGATCCGACCCTTGTCAATCCCTGCACTTGGGTCCACGTCACCTGCGACAATAGCAACTCTGTCATCCGTGTGGATTTGGGATCGGCAGGTCTATCAGGCTCTCTGATTCCACAGCTGGGAGGACTGAGTAACCTTCAGTACTTAAACTTGCATGGCAACAACCTGACTGGCACCATACCACAATCCTTCGGCAACCTGACGAACCTTGTCAGGTTGGAGCTTCAGAAGAATTCACTGAGTGGCACCATCCCTGCTTCTCTTGGCAACATCAAAACATTGAAGTTCTTGCGGCTGAACGGGAATTCTCTGACGGGGACGCTGCCGTTGGAAGTCCTCTCCCTTGTCCTTGTCGGGAATTTGACTGAGATAAATGTTGCTAGAAACAATCTGGACGGCACTGTCGGATCAACTGGACTGAGAGTGACTGCAATTATCCAGGACAGACTGAAGATCTCAGGCTGA
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| Protein seq | MGAHSAAAALFTALLAFATLVSCNTEGDILYAQRQELKDINNVLASWDPTLVNPCTWVHVTCDNSNSVIRVDLGSAGLSGSLIPQLGGLSNLQYLNLHGNNLTGTIPQSFGNLTNLVRLELQKNSLSGTIPASLGNIKTLKFLRLNGNSLTGTLPLEVLSLVLVGNLTEINVARNNLDGTVGSTGLRVTAIIQDRLKISG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.371672 | 3.174238 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0514700 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g31530 | RBH | 1.550337 | 2.018680 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0514400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0015220 | SBH | 0.000000 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0015160 | SBH | 0.0 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0015130 | SBH | 0.000000 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0014750 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0017320 | RBH | 0.0 | 0.0 | 0.145598 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0326000 | SBH | 0.0459945 | 0.00643 | 0.034376 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0015440 | RBH | 0.0 | 0.179818 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0302500 | RBH | 0.1127145 | 3.696681 | 0.039174 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0015350 | RBH | 0.120355 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0017680 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0014990 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0017080 | SBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0006220 | SBH | 0.075333 | 1.062408 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G014940 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0015260 | SBH | 0.0 | 1.681434 | 0.000000 |
