Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0450050 | OGI:03055200 | 14/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:15078647-15081746 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATCCTCCTCGAATACACAATTTCTTTTTTCACGGTCTAGCCAAATTTCCCAATCCGTCGGCGCTCACCGCCTTCTGTGCCGCCTCACTTGCGCCGGCGACCGGATGACGCCTGCATCCCCTCCAATTCATCTTCCTCATCCCGATCTGATCCTCCAGCCCTAGTTCCACAAGCAACATGCCGGAGATGTGTGCGGGAGGGATCCAAGCGAGGTGCCTGGCTAGAGGCGCCACATCCGCCGGGGAAGACGAGGGTTCGCTGGGGAAGACGAGGGTTCAGTCAACGCATGAGAGAGCCACTACAATGGAAGGATGCGAGGGTACACAGGGTCGGCTTCGGCCCCGGCGTCGACGAGGAAGCGGAGCCGGAGGATGTCGCTTGCTGCAGATGGGGGGTCGGCCGCGGCGCCATCGATGGAAGTTGCACGCAGCGCCGCCGCCGTCGATGGAAGCCGAGCGCAGCGCTGCCGTTGACGGAAGCCGGGTGTATCGTCGGATGCCGAATATGCCGCGTCGCGCCGCTGCCGCCGCCGCCGCTGGGCGTAGCACTGCCTCCACCGCCGGACGCCCTATGCCATCGCCACCACACTACCACGTAGGCCAGGGCACAAAGCTGCCATCCAATGGGTTGTGGAGGTAATTAAATTGAGTTATTGGAGAAGATAGAGAGAAATCAGACTGGAAGACATGATTTATTTTTTTTACTACTGCTATTGATTTCCCAGGCATAAATTCATATTATTTTTGTATACATATATAGACGTATCCCGTATCCATGTTTTTCAGAAAATGATGTATCCTATCCATATCCGTATCCCTGTATCTCGGTAACATAGAGCAAAGGATGTTGCTTGCTGCAGATGGGGTGACGGCCGCAGCGGCAGCGACAGTGAGTAGTTTAGAACTTCAGATTAGCTATCTTAGTAGGCAAGCAGAGCAGGCAGGGCGAGCATTGCTAGCGTAGAATAGCTCAGATGAGTTATGTTTGTTTCTGAATTTCTGTCTTTGTTTCTGAATTTCTGTCTCCCACAAGGTTACCTTGGTTATACTGCACAATATCCAAATTTGCTATACACGGTCTCTCATATTTATTAATTTCTTCAGTTTGTCCAATTTCCCATATGAATTTTGAAAAATAAGAAACACCTTCCATGGGAATACCAATATATCTGTTACTGTCCAATGTCTATTTTTCAGCTCAAATCCTCATGATTTTGTTTAGTTCTAATTTATCTGTTCATATCTTTGTACAGGAATATTTTTTCTGGTCAGCCTACAGAGACAAGTTCTGGCAAGGTGAGTTTATGTTCACACAGTTTCTCCATTTTCCTTAAGATCATAAAGTGCCAACCATATTTTCCTTGTTTTTTTTTCATTAAATGGGTGGTTTGATACTATTAGTAATATTGTATAGTGATAAGCAGGAAGCATGTCAGTAGATAGGAGTTGGATGCGCATGAGTAGGGCAACTGCAGAGTGGCAAAAAGGGTTGCAGGAATTTTTAAATTTTGCATTTCAAGATGATAATCCTGGGGATAATGCCCCCTGTCCATGTAGAAGATGCCTTAATGTGGTGCACAAAACACGCTCCGAAGTGCAAAGTGACTTGCTAAGGAATGGATTCGATGAAAGTTACATACAGTGGGTTTACCACGGTGAAGATTCAGATGATGACAATGTCACGGGAAGATTCAGAAGAACGTAAGGAAAGGGAAATGCTACGGGAGGATATTCTCAAAATGATTACTACGCAAAGCGTAGCATCGGAACAACAGGTAATGATTGCCAAAATGTTCACATTCACCAATATTTGATATCTTATATATGTCAAATGTGGAATCATAATATATATATTTCTTGTTTTATGGTGTGAAGTCTGATCTGGCAATAGATTGTCCAACTGAGAATAGAGAACCACATGACACAACAAAGAAGGCTCGAAGCATTCAGAACAACACAGTTGTGAAAGCACTTTTTAACGGCGCTAATTTGCAAGGAACAACAAGTACTACCCGGCAAAATATTTCTTCACAACATCTTAGGAATGTTGCTAGAAATTTTGTACGGTCCCGAACTGATCAGGTAATTACAAATCTTCAGCAAGCTGCTATGTTGAAATGATCTTTTGCAAAAAAATTTACAATATGTTTTCCTGCTCATGGTCTGTTTGTAAAAAAAATAATTTCTTATTGTGTATGGCCAAATCCTGTAACAGGCCAGAGGAGAAAATGGAAGAATGAATGAAAGAAATATCTAAATCAGCTCGGGGTTTGGTGTAGCATCCAGGTAATGATCTGGTACTTTTGCTACTTAACTCATTGGATTGTATTAGTATTTGGCACGTCCCCTTTGCTGACAAAAACAGTTGCCTGTTTAGTTTATTAGTATATGGGGCATCTAAGCTTCTGTTACTGCCCCATAGACCTTTGTTTTGTTTATCTGAGCTAACTAAGATAAGCATGCATGCCATATAAATGATTAGCAACACAGTACTATATATAGCCACCACATATGTAACAAAGCATATATATTTCAGTGGGTCTCACAAGTCAGTAAATAACAGGGGCATGGCTTAAAAAATGTCAGATATAGTGAGCACTAATCACATTTGTTTATGTTTCCATCAATCCAAAGAACACACATGTCCATACAGTGGCATGATAGTTATGGCATATGACTTCTAACTCAATTTAATCATGTTAGATACTAAAATTAGTTGCACTGCAGACTCTGGCAATGTCCTTTATTTGAAGAAATTATGAAGTTTTGGTAACTATACATGCTAGCAGAAAACTAGATAAAATAGCTCTGCATTTTACATGGTGACTTTCTTTACTTTAAATACGACTTGTAACTATATGTCCATACATTTGTACAGGAGGAACAATCAACTCTGTTACTGTTGAATGGCTGGAGCAAACCACGACAAAATCAAACAAGTGATGGCTAGAAAAGCTAGTTTCGACAACAATGTTACAAACTCATTAGTTTCAGAACTTTTAGTTTTATCAGACAACTTGTATTTCAGCATTTGGAAATTTAACATACTCATATTGTCATCATTACTTTGGGTATCTGAAATATATTATGTCTTATTCGCGG
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| CDS seq | ATGCCGGAGATGTGTGCGGGAGGGATCCAAGCGAGGTGCCTGGCTAGAGGCGCCACATCCGCCGGGGAAGACGAGGGTTCGCTGGGGAAGACGAGGGTTCAGTCAACGCATGAGAGAGCCACTACAATGGAAGGATGCGAGGGTACACAGGGTCGGCTTCGGCCCCGGCGTCGACGAGGAAGCGGAGCCGGAGGATGTCGCTTGCTGCAGATGGGGGGTCGGCCGCGGCGCCATCGATGGAAGTTGCACGCAGCGCCGCCGCCGTCGATGGAAGCCGAGCGCAGCGCTGCCGTTGACGGAAGCCGGGTGTATCGTCGGATGCCGAATATGCCGCGTCGCGCCGCTGCCGCCGCCGCCGCTGGGCGTAGCACTGCCTCCACCGCCGGACGCCCTATGCCATCGCCACCACACTACCACGTAGGCCAGGGCACAAAGCTGCCATCCAATGGGTTGTGGAGGAATATTTTTTCTGGTCAGCCTACAGAGACAAGTTCTGGCAAGGAAGCATGT
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| Protein seq | MPEMCAGGIQARCLARGATSAGEDEGSLGKTRVQSTHERATTMEGCEGTQGRLRPRRRRGSGAGGCRLLQMGGRPRRHRWKLHAAPPPSMEAERSAAVDGSRVYRRMPNMPRRAAAAAAAGRSTASTAGRPMPSPPHYHVGQGTKLPSNGLWRNIFSGQPTETSSGKEAC |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0450050 | OsNip_11t0450050-00 | Chr11 | 15078647 | 15081746 | + | RAP2018-11-26 | ||
| CDS seq | ATGCCGGAGATGTGTGCGGGAGGGATCCAAGCGAGGTGCCTGGCTAGAGGCGCCACATCCGCCGGGGAAGACGAGGGTTCGCTGGGGAAGACGAGGGTTCAGTCAACGCATGAGAGAGCCACTACAATGGAAGGATGCGAGGGTACACAGGGTCGGCTTCGGCCCCGGCGTCGACGAGGAAGCGGAGCCGGAGGATGTCGCTTGCTGCAGATGGGGGGTCGGCCGCGGCGCCATCGATGGAAGTTGCACGCAGCGCCGCCGCCGTCGATGGAAGCCGAGCGCAGCGCTGCCGTTGACGGAAGCCGGGTGTATCGTCGGATGCCGAATATGCCGCGTCGCGCCGCTGCCGCCGCCGCCGCTGGGCGTAGCACTGCCTCCACCGCCGGACGCCCTATGCCATCGCCACCACACTACCACGTAGGCCAGGGCACAAAGCTGCCATCCAATGGGTTGTGGAGGTAA
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| Protein seq | MPEMCAGGIQARCLARGATSAGEDEGSLGKTRVQSTHERATTMEGCEGTQGRLRPRRRRGSGAGGCRLLQMGGRPRRHRWKLHAAPPPSMEAERSAAVDGSRVYRRMPNMPRRAAAAAAAGRSTASTAGRPMPSPPHYHVGQGTKLPSNGLWR |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0450050 | OsNip_11t0450050-01 | Chr11 | 15078650 | 15081744 | + | IsoSeq | ||
| CDS seq | ATGCCGGAGATGTGTGCGGGAGGGATCCAAGCGAGGTGCCTGGCTAGAGGCGCCACATCCGCCGGGGAAGACGAGGGTTCGCTGGGGAAGACGAGGGTTCAGTCAACGCATGAGAGAGCCACTACAATGGAAGGATGCGAGGGTACACAGGGTCGGCTTCGGCCCCGGCGTCGACGAGGAAGCGGAGCCGGAGGATGTCGCTTGCTGCAGATGGGGGGTCGGCCGCGGCGCCATCGATGGAAGTTGCACGCAGCGCCGCCGCCGTCGATGGAAGCCGAGCGCAGCGCTGCCGTTGACGGAAGCCGGGTGTATCGTCGGATGCCGAATATGCCGCGTCGCGCCGCTGCCGCCGCCGCCGCTGGGCGTAGCACTGCCTCCACCGCCGGACGCCCTATGCCATCGCCACCACACTACCACGTAGGCCAGGGCACAAAGCTGCCATCCAATGGGTTGTGGAGGAATATTTTTTCTGGTCAGCCTACAGAGACAAGTTCTGGCAAGGAAGCATGT
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| Protein seq | MPEMCAGGIQARCLARGATSAGEDEGSLGKTRVQSTHERATTMEGCEGTQGRLRPRRRRGSGAGGCRLLQMGGRPRRHRWKLHAAPPPSMEAERSAAVDGSRVYRRMPNMPRRAAAAAAAGRSTASTAGRPMPSPPHYHVGQGTKLPSNGLWRNIFSGQPTETSSGKEAC |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.730743 | 1.507311 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g26350 | RBH | 0.949928 | 1.303733 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0450050 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0356200 | RBH | 0.0058325 | 0.1114885 | 0.048075 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0339600 | RBH | 0.0046965 | 0 | 0.003501 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
