Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0296500 | OGI:11031080 | 14/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:10887102-10892897 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATCGCCTCTTCCTCCCCCCCCTCCCTCCCCCCTCTCGCGCGGAAGAACGGAACGGAACGGAACACCAGCCGCTGCTCCGGCAAGCGCTCGCCGCCGGCGAGGCAAAGGTATGCGCCACACGCTCTCTGTACCTACCACCACTCGTTGTCGTTTTCCTCCTCTCGCGGGGGGTGTTTTCTTTGCTTGCCCGCGCCCACCGGTGGATGGCTTAATTTAGCTTTTCCGCTCTGCGCGCGAGGAGGATCTACCTGCTAGCTAGACGGATTCCTTACCCCCCGTGTGATTGATCGATGAGGGGCTTTACGCTGATGCGGTGAATCGAACCGGCACCGCTCTCCGTCATGGGCTTTGGAGGCTGGAAATCCAACCACCGATGGATGCGTTGGGGGAGAAAAGGAAATTGGGGAATTTGGTACTAGGAGAGCTTCCTTGCTGTAGAGAGGAAGCTAGCTAGCTTAGACTTGTTGAGAAATTAGTGGAGAGTGAGTTCGTGAGTGGTTTTATTGCGCATTGCAAGGGAAATGGAAAGAGGGTGTCTGATGAAGCATGCGTTAGAGGTGCACAAAGTAGAGATTCACATCGTTGCTGAAGAGTATAGGCTACTAGTTTGATGTATGCTCCGCGTTGCTAGGAGACATCTCGCGAAGCAAAATTTGGAGAAATGAGCGCACTGAAACTAGGAGGTTGATTTTTTTTTTTAACAATAGTGTAGTCAAAGTGATGTTGGATGGTTGATGTTTAAATGCTGAACAAATGAATATGTGTACATCCATTCAAATTAAGCTCGCCATTGTAAGACTAAAACACGACAAAATGACAGAGAAAGTGGATGACAACAATTTAGGAAGGAAAAAGGTTAAGCACTGCATTACGTTACATATGGAAATATTTACTTGTTAATTTTCATTAGTTTGCAAACAATCTGTAGATCCTAACACATGTATTATATATGCGATCAAATTACAGGCTTTAAATTGATGCCGCTGTGACTAAATAAGTTTTATTCAGTTGTACATCTCTGATATCCATTCTTCAATGAGATAAGCACTCCTTTTGATAATTTTCTTTTTTCTATAATCTCTAATGGTTATAAAAGAAATCCGTTAGAAACAACACATCATTACTAATAGTTCCTAACCTTCTTGACAAAGTCAGATGATTTTCCTTTAGAACCATCTGACGTCACATAATCGCAAATGGTTTCCATATACACCTGTTTACGGTAGTAATGCCAGTTATGTTTTGACTTGCTCATGTGTGCTGCCGTGCTGCACCTAGTGAACCTATAGGCACTGTATTTTTGTGGCAAGAAGGATTTTTTTTTCATGAATGTTATGCAAGTCTTTTTTTTTTGGTCAACTTGCTTCACTTAAGCAGTTGACTAATTCCTCATTAGCCTTAATGTTTTCGCTTGGATGTGGTAACAATTTTAATCAACTTCGTAGATGGAGAACACTCAATTTAGCCGTCCAAAGGCGGTACCCTATAATGACTCCTGGGAGATACCCAATTCTGACTATATTCTCTTGTATCTCAATGACAAACAAACTGGGAAGATCACTTGCATGGTATGTGGGAAAGAAGGACACTACACTTGTGAGTGCCCCATGAAGAATAAAGAAAAATATGTCATATGTACTCTTTGTGGCAAGGTTGGCCACTGTCACTTATGGTGCTGCCATCAGAATGAGAGTGAGAGGCGTGCTTGCCGTCGTTGTGGAGAAAAAGGACACTATGATAATTGGCATCACCTAGGTTGCTCCAGCTGTGAGAAGCATCATCCACTCGGGAGATGTCCTATGGGAAAAATTACATGTTTTCTTTGTGAAGGCAATGGACATGTCCCTGTTCAATGTCATTTGAGTCCAATGCTCACTGCAATAACTCAGAATCAACGAGAGAGTTTCCGAGCTACTCTGAGACAAGCATTGAGAGAAACAAGCAACACAGCAGTCACACCAATTACATTGACCAGAGAATTAGAGCCATATAATGATAAGAATGGAGGCCAACCTAAAGGGGACAATGAAATGGTGCCCAGGGTCTTAGGCTTCAATCAAGGAGAGGAAGGCCATTCTGCTTTGAGGAACCCTAACAGATGCCATGTACCATCCTCTGACAAGGCTAACGTTGCTGCAGATAAGGCACCAAACCAATCTTTAGGAGTAACCTGCTTCAACTGTGGGGGCAAAGGTCACTATTCAAATAAATGTCCTCAAAAGCAAAAGCAACATGGAGTCAGATCAACCAATGCTGCAGCTATGAAAGATAAGACACCGAACCTAACAGGAGTGACCTGCTTCGACTGTGGTGACAGAGGTCACTTTTCTTATACATGTCCTCAAAATCTACTAGAAGTCATGTTGACTGCAGAACTAGAGCCACATGATGATACCTATGAACGCCAACCTAAAGCGGATAATGGAACAGTACCAACTGTCCTAAGCCTGAATTGTGGTGAGGCAAGCCATTGTGGTAGGAATAATCCCATGAAAAGTCTGGAATCATCCTCTGATAAGATCAATTCTACAGCTATGACATATAAGGCACCAAAACGAGTGTTAGGTGTAATCTGCTTCAACTGTCATGAGGAAGGTCATTATGCAAATAGATGTCCTCAAAAGCAACAGGGAATCAACTCAGGTACTTCCCAATCCCCAATAAAGCGGCAGAGGAAGGAATGACTGATGTAAGTTGATATCGAGCAAACTTGTCTTAACATAGATGTTGATAAAAAAGAACTAATAATATATTGTTCCGTGAAATTGTAATGGATGAAAGATTTATCAGATATTCAAAGGAGGTTGTGGTTGTAGAGCCATAACCATCTTTGGTATTGTAGAATTTGATATTGAATAATATCAAGTGATCCGTGTGTTGCAATGAAATTGCTTGAACAAAATTTCTCGGCCTATCTCAGGTTTTGATCGGTAAGCTTTCCATAGTTACTGGAGGTTGTTTTGTATGGTCGTGTGGTTTCTCTCAGGATGGAAATATTCTTGAGCAATCTGCCCAACAAATCTGCATCATCAGAAAAATTGTTTCTTCATCCAGATTTTATGAGATGTCCATTCCTGAAAAATATCAATGGTGCTACAATTTTATTTCTTCTGCATTGCCAGTGTGCTTGTGGCCTTTGGTGACTACATCGATCAAGTTTCAAAGCACATTTGTTCCTTGATAATATATGCCATTATATTCGGTTGCAAGGAGGCAAGGGTCCATTTTCTGAGGATGGAGCGTTTGCAAATTGGCATTCAGGTTTTTCTATGGGGAAGGGACGGAACCTCATGAAGATCATATATGTGTGATAAGAGCTGCAACAAGATGACCAATGTCAAGCCTGAACATGGTTCACCATTTAATCTACTGGTTGGCTGAGCTTCTACAAGATGTCTATCAGCATTCTATAGATGTTTGTTCCCTTCCCTTCCTTTTACTGTACTACCTGGAACTAAATATCGCATTCTTTCCTGCCAGCTTTGTAATTGATTTGCTAAAACAAATGGAATCATATTTTATTATTTTAAATTGTGTTATTGTGATTATCTTTTGAAAAAATAGGTGCTTGTATAGCTGCATAGCTAAGTCTATTGATCTGATAAGTTCTCATTTTTTTCTGCATATTATTTTCAGTACAAAAGGAGTTAATCCACTGAGCAATGAGTGGCTGGAAGATGGGCAGTGCCTGCTAGCGAACAGCTAGAAAATGTACTGGCTCTTGGCACACCAACTGCAAGTGAGCCGTTGGTGCACCAACTGCAAGTAAAGTATGACATACAATTTCACTTTTCACCCTTTGATTTAATATGTTTCGCATACTTAGTATAGGAGAACTTATCCCACAATCTGTATTGTTTTATTTAAAATGTGATTTTTATTGATGTCATCAGCGAGCCATGTTGTAGGACCTTTTGATACTTATAATGTGTTAATTACTGTGCACTGAACATTTATGTTGTTATGCTATATACATGCATTTTGAAATAGTCACTGAACATGGATGATATTTTTTTATAATTCTTACTAATAGCTGGAAGTCTTGTTCCTGATATAGTTAAAGTTAGCAAGCATGTATAGCTGTGCATGTACACTGCATTATTTATGCAAACTTATTAAGGCAAAACAGTGTCAGGTCAATATGAGCTTCATTCAAATATCGAAGGCGGTGGCATTGTGGTTATCTAGTTTTGATTCGGGTCCTCTTGCCTATAAAGTGCAAGTCAACCATATATTTTAGTCATTTCTATTTTTGCTAGTACAAAAACACCAATCAGAACCATGGTTTTGCATATTTGGTTCACACGTCTAGTCTGCATCCCTCTGTTGCCAAATGTTAAACGAACAGACTAATGATCTTTAAGATGTATCCTAGAAGTTGGAAAAAAACACTAATAATATCGTGTTCCATAAAACTGTAATGGATTAAAGATTTAACAGCATTATGTTCAAAGGAAGCCTCATGGCTATAGAGTTGTATCCGTCACCAGTATTGTAGAAATTGTTTTTGAAATCTCAGGCTATCTGTGTCGCAATAATTGTTTGAACACTCTCAGGCTATCTCATGTTTTGATTGGAAGGTTTCCAGTAAGTTGCTGGAGGTTGTTTGGTATGGTTTGTCTCAGGTTAGAAATATTCTTCAGCAGCCTTTTCTTAGTGAATCTGCATCAACAGAGAAATTGGTTGGTAATTTCGTTGGATGTCTATTCCTGAATCCTGAAAAACATTGATGGCACTGCAATTTTCATTCTTTTGTACTGTCACTACCAATAAGTTCTGGTTCTTGTGGGCTTTTGGCCTTTGGTGACTGCAGTGATGAAGGTCAAAAGTAAATTTGTTCATTGAAAATTTATGCTATTATGTGCAGTCCCAAGAAAGCAAGGGTCCATTTTCGAGGATGGAGCGTGTTGCTAATTGGCATTCAGGTTTTTCTATGACAAGGGATGGAGGTTCCATCATGAAATAGTTTGCATGTCAGGATGGTCATATGTGTGATAAGAACTGCAACGAGCACATTAATGTCAAGCATTGTTTAAATGTTTGTCCCCTTCCCTCCCTTTTACTGCTTCTCTTATTTTTGAATATGCTGATATGTTTATGAACCACTCTGATTTATTACCATCGTAAAGCCACGCAACTTCTATTGTTCCTTTTTCTCTCTTCCATCTAATGTCAAGAATGTTTTACTAATAACTGGAACCAAATATGATCATTTTCCTACAGCTTTGTGATTGCTTTAGTACACCAAAACGGAACCATATGTTATTATTTCAAATTGTGTGATTGCAATTATCTGTTGTGCGTTTGCAACTCCATTGCTAAGTCTATCTAATCAGCCCTTGATGTTTTTCTATGTATTCTTTTCAGCATAAAGGAGGTAAGCCATTGTCGCATGAGGCTCTGTGCAACGAGTTGCTGGAAGATGGCAATGCCTGCTTGCCTGATATTAGCGAACAACTAGAAAATGCACTGGCCCTTGGCAGACCAACTGCAAGTGAACTAAAGAGTTGCATTTCACCCTTTGATTTAATGTGATTTGCATACTTTGGTAATAGGAAATTTATCTCATAAATCGTTTTGTTTAAGATAAAATGCGATTTAGTGAAGTTATGACTTGTGAGAGAGCCATGTTGTAGGGCATTTTGGATTATTTGCGATGTGTTAATTACCGTTCACTTTATTATGTTATACATGTATTTTGAAATATTCACATAACATTTGTGTTGTCATGTTTTATACTACATGCGCACTGAAATATTCACAGAACATGGATGCTAATTTCTCGTATGTATCTCT
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| CDS seq | ATGGAGAACACTCAATTTAGCCGTCCAAAGGCGGTACCCTATAATGACTCCTGGGAGATACCCAATTCTGACTATATTCTCTTGTATCTCAATGACAAACAAACTGGGAAGATCACTTGCATGGTATGTGGGAAAGAAGGACACTACACTTGTGAGTGCCCCATGAAGAATAAAGAAAAATATGTCATATGTACTCTTTGTGGCAAGGTTGGCCACTGTCACTTATGGTGCTGCCATCAGAATGAGAGTGAGAGGCGTGCTTGCCGTCGTTGTGGAGAAAAAGGACACTATGATAATTGGCATCACCTAGGTTGCTCCAGCTGTGAGAAGCATCATCCACTCGGGAGATGTCCTATGGGAAAAATTACATGTTTTCTTTGTGAAGGCAATGGACATGTCCCTGTTCAATGTCATTTGAGTCCAATGCTCACTGCAATAACTCAGAATCAACGAGAGAGTTTCCGAGCTACTCTGAGACAAGCATTGAGAGAAACAAGCAACACAGCAGTCACACCAATTACATTGACCAGAGAATTAGAGCCATATAATGATAAGAATGGAGGCCAACCTAAAGGGGACAATGAAATGGTGCCCAGGGTCTTAGGCTTCAATCAAGGAGAGGAAGGCCATTCTGCTTTGAGGAACCCTAACAGATGCCATGTACCATCCTCTGACAAGGCTAACGTTGCTGCAGATAAGGCACCAAACCAATCTTTAGGAGTAACCTGCTTCAACTGTGGGGGCAAAGGTCACTATTCAAATAAATGTCCTCAAAAGCAAAAGCAACATGGAGTCAGATCAACCAATGCTGCAGCTATGAAAGATAAGACACCGAACCTAACAGGAGTGACCTGCTTCGACTGTGGTGACAGAGGTCACTTTTCTTATACATGTCCTCAAAATCTACTAGAAGTCATGTTGACTGCAGAACTAGAGCCACATGATGATACCTATGAACGCCAACCTAAAGCGGATAATGGAACAGTACCAACTGTCCTAAGCCTGAATTGTGGTGAGGCAAGCCATTGTGGTAGGAATAATCCCATGAAAAGTCTGGAATCATCCTCTGATAAGATCAATTCTACAGCTATGACATATAAGGCACCAAAACGAGTGTTAGGTGTAATCTGCTTCAACTGTCATGAGGAAGGTCATTATGCAAATAGATGTCCTCAAAAGCAACAGGGAATCAACTCAGGTACTTCCCAATCCCCAATAAAGCGGCAGAGGAAGGAATGA
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| Protein seq | MENTQFSRPKAVPYNDSWEIPNSDYILLYLNDKQTGKITCMVCGKEGHYTCECPMKNKEKYVICTLCGKVGHCHLWCCHQNESERRACRRCGEKGHYDNWHHLGCSSCEKHHPLGRCPMGKITCFLCEGNGHVPVQCHLSPMLTAITQNQRESFRATLRQALRETSNTAVTPITLTRELEPYNDKNGGQPKGDNEMVPRVLGFNQGEEGHSALRNPNRCHVPSSDKANVAADKAPNQSLGVTCFNCGGKGHYSNKCPQKQKQHGVRSTNAAAMKDKTPNLTGVTCFDCGDRGHFSYTCPQNLLEVMLTAELEPHDDTYERQPKADNGTVPTVLSLNCGEASHCGRNNPMKSLESSSDKINSTAMTYKAPKRVLGVICFNCHEEGHYANRCPQKQQGINSGTSQSPIKRQRKE |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0296500 | OsNip_11t0296500-01 | Chr11 | 10887102 | 10892897 | + | RAP2018-11-26 | ||
| CDS seq | ATGGAGAACACTCAATTTAGCCGTCCAAAGGCGGTACCCTATAATGACTCCTGGGAGATACCCAATTCTGACTATATTCTCTTGTATCTCAATGACAAACAAACTGGGAAGATCACTTGCATGGTATGTGGGAAAGAAGGACACTACACTTGTGAGTGCCCCATGAAGAATAAAGAAAAATATGTCATATGTACTCTTTGTGGCAAGGTTGGCCACTGTCACTTATGGTGCTGCCATCAGAATGAGAGTGAGAGGCGTGCTTGCCGTCGTTGTGGAGAAAAAGGACACTATGATAATTGGCATCACCTAGGTTGCTCCAGCTGTGAGAAGCATCATCCACTCGGGAGATGTCCTATGGGAAAAATTACATGTTTTCTTTGTGAAGGCAATGGACATGTCCCTGTTCAATGTCATTTGAGTCCAATGCTCACTGCAATAACTCAGAATCAACGAGAGAGTTTCCGAGCTACTCTGAGACAAGCATTGAGAGAAACAAGCAACACAGCAGTCACACCAATTACATTGACCAGAGAATTAGAGCCATATAATGATAAGAATGGAGGCCAACCTAAAGGGGACAATGAAATGGTGCCCAGGGTCTTAGGCTTCAATCAAGGAGAGGAAGGCCATTCTGCTTTGAGGAACCCTAACAGATGCCATGTACCATCCTCTGACAAGGCTAACGTTGCTGCAGATAAGGCACCAAACCAATCTTTAGGAGTAACCTGCTTCAACTGTGGGGGCAAAGGTCACTATTCAAATAAATGTCCTCAAAAGCAAAAGCAACATGGAGTCAGATCAACCAATGCTGCAGCTATGAAAGATAAGACACCGAACCTAACAGGAGTGACCTGCTTCGACTGTGGTGACAGAGGTCACTTTTCTTATACATGTCCTCAAAATCTACTAGAAGTCATGTTGACTGCAGAACTAGAGCCACATGATGATACCTATGAACGCCAACCTAAAGCGGATAATGGAACAGTACCAACTGTCCTAAGCCTGAATTGTGGTGAGGCAAGCCATTGTGGTAGGAATAATCCCATGAAAAGTCTGGAATCATCCTCTGATAAGATCAATTCTACAGCTATGACATATAAGGCACCAAAACGAGTGTTAGGTGTAATCTGCTTCAACTGTCATGAGGAAGGTCATTATGCAAATAGATGTCCTCAAAAGCAACAGGGAATCAACTCAGGTACTTCCCAATCCCCAATAAAGCGGCAGAGGAAGGAATGA
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| Protein seq | MENTQFSRPKAVPYNDSWEIPNSDYILLYLNDKQTGKITCMVCGKEGHYTCECPMKNKEKYVICTLCGKVGHCHLWCCHQNESERRACRRCGEKGHYDNWHHLGCSSCEKHHPLGRCPMGKITCFLCEGNGHVPVQCHLSPMLTAITQNQRESFRATLRQALRETSNTAVTPITLTRELEPYNDKNGGQPKGDNEMVPRVLGFNQGEEGHSALRNPNRCHVPSSDKANVAADKAPNQSLGVTCFNCGGKGHYSNKCPQKQKQHGVRSTNAAAMKDKTPNLTGVTCFDCGDRGHFSYTCPQNLLEVMLTAELEPHDDTYERQPKADNGTVPTVLSLNCGEASHCGRNNPMKSLESSSDKINSTAMTYKAPKRVLGVICFNCHEEGHYANRCPQKQQGINSGTSQSPIKRQRKE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.062733 | 0.653182 | 2.370481 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g19100 | RBH | 0.718723 | 0.585597 | 0.610044 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0296500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0018040 | SBH | 0.992018 | 4.544027 | 6.878465 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0021030 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0017970 | SBH | 1.358237 | 3.656014 | 7.148354 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0017650 | SBH | 0.126968 | 0.328124 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0018070 | SBH | 9.706241 | 12.832300 | 9.408218 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0164500 | RBH | 5.5841825 | 10.4396665 | 40.443737 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0167000 | RBH | 9.506236 | 18.990552 | 11.0190855 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0018360 | SBH | 0.251781 | 0.261664 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0017980 | SBH | 0.0 | 10.024766 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0017950 | SBH | 0.152357 | 5.758921 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
